Available CRAN Packages By Date of Publication

Date	Package	Title
2013-06-19	fastclime	A fast solver for constrained l1 minimization approach to sparse precision matrix estimation
2013-06-19	forecast	Forecasting functions for time series and linear models
2013-06-19	FRAPO	Financial Risk Modelling and Portfolio Optimisation with R
2013-06-19	gems	Generalized multistate simulation model
2013-06-19	h5r	Interface to HDF5 Files
2013-06-19	JudgeIt	JudgeIt
2013-06-19	markdown	Markdown rendering for R
2013-06-19	Mcomp	Data from the M-competitions
2013-06-19	MConjoint	Conjoint Analysis through Averaging of Multiple Analyses
2013-06-19	MethComp	Functions for analysis of agreement in method comparison studies
2013-06-19	ora	Convenient Tools for Working with Oracle Databases
2013-06-19	qat	Quality Assurance Toolkit
2013-06-19	tbart	Teitz and Bart p-median algorithm
2013-06-19	ZIM	Statistical Models for Count Time Series with Excess Zeros
2013-06-18	agRee	Various Methods for Measuring Agreement
2013-06-18	aods3	Analysis of Overdispersed Data using S3 methods
2013-06-18	formatR	Format R Code Automatically
2013-06-18	geigen	Calculate generalized eigenvalues of a matrix pair
2013-06-18	glmlep	Fit GLM with LEP-based penalized maximum likelihood
2013-06-18	gRbase	A package for graphical modelling in R
2013-06-18	gsarima	Two functions for Generalized SARIMA time series simulation
2013-06-18	lmerTest	Tests for random and fixed effects for linear mixed effect models (lmer objects of lme4 package)
2013-06-18	lmom	L-moments
2013-06-18	lmomRFA	Regional frequency analysis using L-moments
2013-06-18	mlDNA	Machine Learning-based Differential Network Analysis of Transcriptome Data
2013-06-18	mmm	an R package for analyzing multivariate longitudinal data with multivariate marginal models
2013-06-18	mombf	Moment and Inverse Moment Bayes factors
2013-06-18	restlos	Robust estimation of location and scatter
2013-06-18	robust	Robust Library
2013-06-18	rrBLUP	Ridge regression and other kernels for genomic selection
2013-06-18	rsgcc	Gini methodology-based correlation and clustering analysis of microarray and RNA-Seq gene expression data
2013-06-18	tm	Text Mining Package
2013-06-18	topicmodels	Topic models
2013-06-18	trip	Spatial analysis of animal track data
2013-06-18	ZeBook	ZeBook Working with dynamic models for agriculture and environment
2013-06-17	Bolstad	Bolstad functions
2013-06-17	Bolstad2	Bolstad functions
2013-06-17	constrainedKriging	Constrained, covariance-matching constrained and universal point or block kriging
2013-06-17	ddepn	Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data
2013-06-17	diffractometry	Baseline identification and peak decomposition for x-ray diffractograms
2013-06-17	evtree	Evolutionary Learning of Globally Optimal Trees
2013-06-17	flip	Multivariate Permutation Tests
2013-06-17	fscaret	Automated caret feature selection
2013-06-17	longpower	Sample size calculations for longitudinal data
2013-06-17	MCPerm	A Monte Carlo permutation method for multiple test correlation
2013-06-17	meta	Meta-Analysis with R
2013-06-17	Morpho	Calculations and visualizations related to Geometric Morphometrics
2013-06-17	nhlscrapr	Compiling the NHL Real Time Scoring System Database for easy use in R
2013-06-17	PowerTOST	Power and Sample size based on two one-sided t-tests (TOST) for (bio)equivalence studies
2013-06-17	relaxnet	Relaxation of glmnet models (as in relaxed lasso, Meinshausen 2007)
2013-06-17	repmis	A collection of miscellaneous tools for reproducible research with R
2013-06-17	robeth	R functions for robust statistics
2013-06-17	robustlmm	Robust Linear Mixed Effects Models
2013-06-17	tuneR	Analysis of music and speech
2013-06-17	twiddler	Interactive manipulation of R expressions
2013-06-16	ALDqr	Quantile Regression Using Asymmetric Laplace Distribution
2013-06-16	CompQuadForm	Distribution function of quadratic forms in normal variables
2013-06-16	GeneNet	Modeling and Inferring Gene Networks
2013-06-16	JointRegBC	Joint Modelling of Mixed Correlated Binary and Continuous Responses : A Latent Variable Approach
2013-06-16	nsga2R	Elitist Non-dominated Sorting Genetic Algorithm based on R
2013-06-16	visualFields	Statistical methods for visual fields
2013-06-15	clusterCrit	Clustering Indices
2013-06-15	dcemriS4	A Package for Medical Image Analysis (S4 implementation)
2013-06-15	ExPosition	Exploratory analysis with the singular value decomposition
2013-06-15	InPosition	Inference Tests for ExPosition
2013-06-15	magicaxis	Pretty scientific plotting with minor-tick and log minor-tick support
2013-06-15	MExPosition	Multi-table ExPosition
2013-06-15	plotrix	Various plotting functions
2013-06-15	raster	raster: Geographic data analysis and modeling
2013-06-15	rioja	Analysis of Quaternary Science Data
2013-06-15	robustbase	Basic Robust Statistics
2013-06-15	SASxport	Read and Write SAS XPORT Files
2013-06-15	TExPosition	Two-table ExPosition
2013-06-15	TInPosition	Inference tests for TExPosition
2013-06-14	attfad	Evaluation and comparison of expression data and GRNs
2013-06-14	chemCal	Calibration functions for analytical chemistry
2013-06-14	clogitL1	Fitting exact conditional logistic regression with lasso and elastic net penalties
2013-06-14	corHMM	Analysis of binary character evolution
2013-06-14	doMPI	Foreach parallel adaptor for the Rmpi package
2013-06-14	gitter	Robust gridding and quantifying of pinned genetic screens
2013-06-14	gMCP	Graph Based Multiple Comparison Procedures
2013-06-14	lgcp	Log-Gaussian Cox Process
2013-06-14	lsmeans	Least-squares means
2013-06-14	miscF	Miscellaneous Functions
2013-06-14	MultiChIPmixHMM	MultiChIPmixHMM
2013-06-14	OpenRepGrid	Tools to analyse repertory grid data
2013-06-14	ordPens	Selection and/or Smoothing of Ordinal Predictors
2013-06-14	RSA	Response surface analysis
2013-06-14	wpp2012	World Population Prospects 2012
2013-06-14	zoo	S3 Infrastructure for Regular and Irregular Time Series (Z's ordered observations)
2013-06-13	BCE	Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
2013-06-13	car	Companion to Applied Regression
2013-06-13	cts	Continuous Time Autoregressive Models
2013-06-13	depthTools	Depth Tools Package
2013-06-13	deTestSet	Testset for differential equations
2013-06-13	diversitree	diversitree: comparative phylogenetic analyses of diversification
2013-06-13	govStatJPN	functions to get public survey data in Japan
2013-06-13	lsr	Companion package to "Learning Statistics with R"
2013-06-13	mhsmm	Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences
2013-06-13	mixer	Random graph clustering
2013-06-13	PDSCE	Positive definite sparse covariance estimators
2013-06-13	RcmdrPlugin.depthTools	R commander Depth Tools Plug-In
2013-06-13	solaR	Solar Photovoltaic Systems
2013-06-13	SynchWave	Synchrosqueezed Wavelet Transform
2013-06-13	timereg	Flexible regression models for survival data
2013-06-12	candisc	Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
2013-06-12	cobs99	Constrained B-splines – outdated 1999 version
2013-06-12	DTR	Estimation and comparison of dynamic treatment regimes
2013-06-12	fmri	Analysis of fMRI experiments
2013-06-12	GRaF	Species distribution modelling using latent Gaussian random fields
2013-06-12	HEAT	Health Effects of Air Pollution and Temperature (HEAT)
2013-06-12	icaOcularCorrection	Independent Components Analysis (ICA) based artifact correction
2013-06-12	inline	Inline C, C++, Fortran function calls from R
2013-06-12	lfe	Linear Group Fixed Effects
2013-06-12	migration.indices	Migration indices
2013-06-12	NetIndices	Estimating network indices, including trophic structure of foodwebs in R
2013-06-12	phylosim	R package for simulating biological sequence evolution
2013-06-12	pmml	Generate PMML for various models
2013-06-12	pmmlTransformations	Transforms input data from a PMML perspective
2013-06-12	prettyGraphs	publication-quality graphics
2013-06-12	rbefdata	BEFdata R package
2013-06-12	ReacTran	Reactive transport modelling in 1D, 2D and 3D
2013-06-12	SciencePo	A Tool for Analyzing Political Behaviour
2013-06-12	sdcMicro	Statistical Disclosure Control methods for the production of public- and scientific-use files
2013-06-12	sdcMicroGUI	Graphical user interface for package sdcMicro
2013-06-12	secr	Spatially explicit capture-recapture
2013-06-12	smoothSurv	Survival Regression with Smoothed Error Distribution
2013-06-12	SoDA	Functions and Examples for "Software for Data Analysis"
2013-06-12	spikeSlabGAM	Bayesian variable selection and model choice for generalized additive mixed models
2013-06-12	stabledist	Stable Distribution Functions
2013-06-12	survey	analysis of complex survey samples
2013-06-12	trustOptim	Trust region nonlinear optimization, efficient for sparse Hessians
2013-06-12	unmarked	Models for Data from Unmarked Animals
2013-06-11	apcluster	Affinity Propagation Clustering
2013-06-11	bayesSurv	Bayesian Survival Regression with Flexible Error and Random Effects Distributions
2013-06-11	comparison	Multivariate likelihood ratio calculation and evaluation
2013-06-11	ISLR	Data for An Introduction to Statistical Learning with Applications in R
2013-06-11	lifecontingencies	A package to perform actuarial mathematics for life contingencies insurances
2013-06-11	mchof	multicore higher-order functions
2013-06-11	mixAK	Multivariate normal mixture models and mixtures of generalized linear mixed models including model based clustering
2013-06-11	mmod	Modern measures of population differentiation
2013-06-11	MRCE	Multivariate regression with covariance estimation
2013-06-11	PivotalR	R front-end to PostgreSQL and Pivotal (Greenplum) database, wrapper for MADlib
2013-06-11	randtoolbox	toolbox for pseudo and quasi random number generation and RNG tests
2013-06-11	RcmdrPlugin.MPAStats	R Commander Plug-in for MPA Statistics
2013-06-11	rite	The Right Editor to Write R
2013-06-11	rngWELL	toolbox for WELL random number generators
2013-06-11	RTConnect	Tools for analyzing sales report files of iTunes Connect
2013-06-11	SIMMS	Subnetwork Integration for Multi-Modal Signatures
2013-06-11	tbdiag	Functions for tuberculosis diagnostics research
2013-06-11	ThreeWay	Three-way component analysis
2013-06-11	TwoStepCLogit	Conditional logistic regression: A two-step estimation method
2013-06-10	cabootcrs	Bootstrap Confidence Regions for Correspondence Analysis
2013-06-10	chebpol	Multivariate Chebyshev interpolation
2013-06-10	covLCA	Latent Class Models with Covariate Effects on Underlying and Measured Variables
2013-06-10	CSS	Extract information from an html document with CSS selectors
2013-06-10	DiceEval	Construction and evaluation of metamodels
2013-06-10	fmsb	Functions for medical statistics book with some demographic data
2013-06-10	NMOF	Numerical Methods and Optimization in Finance
2013-06-10	pks	Probabilistic Knowledge Structures
2013-06-10	planor	Generation of regular factorial designs
2013-06-10	Rd2roxygen	Convert Rd to roxygen documentation and utilities to improve documentation
2013-06-10	simctest	Safe implementation of Monte Carlo tests
2013-06-10	sparktex	Generate LaTeX sparklines in R
2013-06-10	tth	TeX to HTML/MathML Translators tth/ttm
2013-06-09	cems	Conditional expectation manifolds
2013-06-09	diseasemapping	Calculate observed and expected disease incidence counts from a case file and population data
2013-06-09	irace	Iterated Racing Procedures
2013-06-09	MNP	R Package for Fitting the Multinomial Probit Model
2013-06-09	pavo	Perceptual analysis, visualization and organization of spectral color data in R
2013-06-09	SNPRelate	Parallel Computing Toolset for Genome-Wide Association Studies (GWAS)
2013-06-09	TreePar	Estimating birth and death rates based on phylogenies
2013-06-09	TreeSim	Simulating trees under the birth-death model
2013-06-09	xts	eXtensible Time Series
2013-06-08	Amelia	Amelia II: A Program for Missing Data
2013-06-08	changepoint	An R package for changepoint analysis
2013-06-08	ecp	Nonparametric Multiple Change Point Analysis of Multivariate Data
2013-06-08	lshorth	The Length of the Shorth
2013-06-08	pbs	Periodic B Splines
2013-06-08	RFinanceYJ	RFinanceYJ
2013-06-08	spatial.tools	R functions for working with spatial data
2013-06-08	vars	VAR Modelling
2013-06-07	CBPS	R Package for Covariate Balancing Propensity Score
2013-06-07	doParallel	Foreach parallel adaptor for the parallel package
2013-06-07	geotopbricks	geotopbricks: Analyzes raster maps as input/output files from the Hydrological Distributed Model GEOtop
2013-06-07	grpreg	Regularization paths for regression models with grouped covariates
2013-06-07	gstudio	Spatial utility functions from the Dyer laboratory
2013-06-07	GWAF	Genome-wide association/interaction analysis and rare variant analysis with family data
2013-06-07	lmeSplines	lmeSplines
2013-06-07	poweRlaw	Fitting heavy tailed distributions: the poweRlaw package
2013-06-07	retimes	Reaction Time Analysis
2013-06-06	abc	Tools for Approximate Bayesian Computation (ABC)
2013-06-06	ads	Spatial point patterns analysis
2013-06-06	CLAG	CLAG: an unsupervised non hierarchical clustering algorithm handling biological data
2013-06-06	ConConPiWiFun	This package contains an implementation of continuous convex piecewise (linear and quadratic) functions
2013-06-06	doSNOW	Foreach parallel adaptor for the snow package
2013-06-06	exams	Automatic Generation of Exams in R
2013-06-06	FactoClass	Combination of Factorial Methods and Cluster Analysis
2013-06-06	foreach	Foreach looping construct for R
2013-06-06	hydroPSO	Particle Swarm Optimisation, with focus on Environmental Models
2013-06-06	IUPS	Incorporating Uncertainties in Propensity Scores
2013-06-06	JM	Joint Modeling of Longitudinal and Survival Data
2013-06-06	JMbayes	Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach
2013-06-06	kinship2	Pedigree functions
2013-06-06	LVMMCOR	A Latent Variable Model for Mixed Continuous and Ordinal Responses
2013-06-06	metrumrg	Pharmacometric tools for data preparation, modeling, simulation, and reporting
2013-06-06	minPtest	Gene region-level testing procedure for SNP data, using the min P test resampling approach
2013-06-06	pegas	Population and Evolutionary Genetics Analysis System
2013-06-06	Rarity	Calculation of rarity indices for species and assemblages of species
2013-06-06	Reol	R interface to the Encyclopedia of Life
2013-06-06	StAMPP	Statistical Analysis of Mixed Ploidy Populations
2013-06-06	urca	Unit root and cointegration tests for time series data
2013-06-05	alphashape3d	Implementation of the 3D alpha-shape for the reconstruction of 3D sets from a point cloud
2013-06-05	batch	Batching Routines in Parallel and Passing Command-Line Arguments to R
2013-06-05	BenfordTests	Statistical Tests for Evaluating Conformity to Benford's Law
2013-06-05	bpcp	Beta Product Confidence Procedure for Right Censored Data
2013-06-05	cape	Combined analysis of pleiotropy and epistasis
2013-06-05	GSE	Robust Estimation of Multivariate Location and Scatter in the Presence of Missing Data
2013-06-05	interval	Weighted Logrank Tests and NPMLE for interval censored data
2013-06-05	mgcv	Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness estimation
2013-06-05	micromapST	Linked Micromap Plots for U. S. States
2013-06-05	mmeta	Multivariate Meta-Analysis Using Sarmanov Beta Prior Distributions
2013-06-05	outbreaker	Bayesian inference of outbreak dynamics based on epidemiological and genetic information
2013-06-05	packHV	A few useful functions for statisticians
2013-06-05	party	A Laboratory for Recursive Partytioning
2013-06-05	phia	Post-Hoc Interaction Analysis
2013-06-05	RcmdrPlugin.temis	Graphical Integrated Text Mining Solution
2013-06-05	RcppArmadillo	Rcpp integration for Armadillo templated linear algebra library
2013-06-05	shiny	Web Application Framework for R
2013-06-05	simMSM	Simulation of event histories based on nonlinear hazard rate functions and potentially nonlinear covariate effects
2013-06-05	sybilEFBA	Using gene expression data to improve flux balance analysis predictions
2013-06-04	adegenet	adegenet: an R package for the exploratory analysis of genetic and genomic data
2013-06-04	agridat	Agricultural datasets
2013-06-04	BEST	Bayesian Estimation Supersedes the t-Test
2013-06-04	bigGP	Distributed Gaussian process calculations
2013-06-04	Causata	Analysis utilities for binary classification and Causata users
2013-06-04	copas	Statistical methods to model and adjust for bias in meta-analysis
2013-06-04	costat	Time series costationarity determination
2013-06-04	ctarma	Estimation and simulation of CARMA(p,q)
2013-06-04	DataCombine	R tools for making it easier to combine and clean data sets
2013-06-04	EasyABC	EasyABC: performing efficient approximate Bayesian computation sampling schemes
2013-06-04	EMD	Empirical Mode Decomposition and Hilbert Spectral Analysis
2013-06-04	FGalgorithm	Flury and Gautschi algorithms
2013-06-04	gdimap	Generalized Diffusion Magnetic Resonance Imaging
2013-06-04	HIBAG	HIBAG – HLA Genotype Imputation with Attribute Bagging
2013-06-04	mopsocd	MOPSOCD: Multi-objective Particle Swarm Optimization with Crowding Distance
2013-06-04	netClass	netClass: An R Package for Network-Based Biomarker Discovery
2013-06-04	NPMVCP	Nonparametric Multivariate Change Point Model
2013-06-04	PrivateLR	Differentially private regularized logistic regression
2013-06-04	QZ	Generalized Eigenvalues and QZ Decomposition
2013-06-04	RfmriVC	Varying stimulus coefficient fMRI models in R
2013-06-04	Rglpk	R/GNU Linear Programming Kit Interface
2013-06-04	Rmosek	The R-to-MOSEK Optimization Interface
2013-06-04	RSADBE	Data related to the book "R Statistical Application Development by Example"
2013-06-04	SCEPtER	Stellar CharactEristics Pisa Estimation gRid
2013-06-04	SCEPtERextras	Additional grids for SCEPtER
2013-06-04	skatMeta	Efficient meta analysis for the SKAT test
2013-06-04	wethepeople	An R client for interacting with the White House's "We The People" petition API
2013-06-03	ahaz	Regularization for semiparametric additive hazards regression
2013-06-03	coloc	Colocalisation tests of two genetic traits
2013-06-03	DSL	Distributed Storage and List
2013-06-03	hydroGOF	Goodness-of-fit functions for comparison of simulated and observed hydrological time series
2013-06-03	jpeg	Read and write JPEG images
2013-06-03	l2boost	l2boost - Friedman's boosting algorithm for regularized linear regression
2013-06-03	latentnet	Latent position and cluster models for statistical networks
2013-06-03	nlts	(non)linear time series analysis
2013-06-03	pcurve	Principal curve analysis
2013-06-03	phenology	Tools to manage a parametric function that describes phenology
2013-06-03	png	Read and write PNG images
2013-06-03	rasterVis	Visualization methods for the raster package
2013-06-03	RCircos	Circos 2D Track Plot
2013-06-03	RobustRankAggreg	Methods for robust rank aggregation
2013-06-03	SKAT	SNP-set (Sequence) Kernel Association Test
2013-06-03	smoothie	Two-dimensional Field Smoothing
2013-06-03	spatialprobit	Spatial Probit Models
2013-06-03	SYNCSA	SYNCSA - Analysis of functional and phylogenetic patterns in metacommunities
2013-06-03	tm.plugin.dc	Text Mining Distributed Corpus Plug-In
2013-06-03	TrialSize	R functions in Chapter 3,4,6,7,9,10,11,12,14,15
2013-06-02	circlize	circos layout in R
2013-06-02	GWmodel	Geographically weighted models
2013-06-02	hierNet	A Lasso for Hierarchical Interactions
2013-06-02	ngspatial	Classes for Spatial Data
2013-06-02	spBayes	Univariate and Multivariate Spatial-temporal Modeling
2013-06-01	httpuv	HTTP and WebSocket server library
2013-06-01	hydroTSM	Time series management, analysis and interpolation for hydrological modelling
2013-06-01	Lahman	Sean Lahman's Baseball Database
2013-06-01	msgl	High dimensional multiclass classification using sparse group lasso
2013-06-01	ndtv	Network Dynamic Temporal Visualizations
2013-06-01	RCA	Relational Class Analysis
2013-05-31	catIrt	An R Package for Simulating IRT-Based Computerized Adaptive Tests
2013-05-31	enRich	An R package for analysis of multiple ChIP-seq data
2013-05-31	KoNLP	Korean NLP Package
2013-05-31	micromap	Linked Micromap Plots
2013-05-31	phytools	Phylogenetic Tools for comparative biology (and other things)
2013-05-31	picante	R tools for integrating phylogenies and ecology
2013-05-31	protoclass	Interpretable classification with prototypes
2013-05-31	Rsymphony	Symphony in R
2013-05-31	SimCorMultRes	Simulates Correlated Multinomial Responses
2013-05-31	Simile	Interact with Simile models
2013-05-31	sybil	sybil - Efficient Constrained Based Modelling in R
2013-05-30	AppliedPredictiveModeling	Functions and Data Sets for 'Applied Predictive Modeling'
2013-05-30	countrycode	Convert country names and country codes
2013-05-30	distillery	Distillery
2013-05-30	FAOSTAT	A complementary package to the FAOSTAT database and the Statistical Yearbook of the Food and Agricultural Organization of the United Nations
2013-05-30	glassomix	High dimensional Mixture Graph Models selection
2013-05-30	gRain	Graphical Independence Networks
2013-05-30	gRim	Graphical Interaction Models
2013-05-30	MBmca	Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R
2013-05-30	metamisc	Diagnostic and prognostic meta analysis (metamisc)
2013-05-30	mht	Multiple Hypotheses Testing For Variable Selection
2013-05-30	multgee	GEE Solver for Correlated Nominal or Ordinal Multinomial Responses
2013-05-30	mvtnorm	Multivariate Normal and t Distributions
2013-05-30	NPCD	Nonparametric Methods for Cognitive Diagnosis
2013-05-30	OPDOE	OPtimal Design Of Experiments
2013-05-30	Rz	GUI Tool for Data Management like SPSS or Stata
2013-05-30	sybilSBML	SBML Integration in Package sybil
2013-05-29	afex	Analysis of Factorial Experiments
2013-05-29	BH	The Boost C++ Libraries
2013-05-29	branchLars	Cost-efficient Variable Selection
2013-05-29	dbmss	Distance-based measures of spatial structures
2013-05-29	disclap	Discrete Laplace Exponential Family
2013-05-29	linkcomm	Tools for Generating, Visualizing, and Analysing Link Communities in Networks
2013-05-29	nsprcomp	Non-Negative Sparse PCA
2013-05-29	OneTwoSamples	Deal with one and two (normal) samples
2013-05-29	pastis	Phylogenetic Assembly with Soft Taxonomic Inferences
2013-05-29	pvsR	An R package to interact with the Project Vote Smart API for scientific research
2013-05-29	rfisheries	R interface for fisheries data
2013-05-29	RSDA	RSDA - R to Symbolic Data Analysis
2013-05-29	sirt	Supplementary Item Response Theory Models
2013-05-29	snpEnrichment	SNPs enrichment analysis
2013-05-29	SPMS	Sub-Pathway Minner Software
2013-05-29	wavethresh	Wavelets statistics and transforms
2013-05-28	CoinMinD	Simultaneous Confidence Interval for Multinomial Proportion
2013-05-28	DTMCPack	Suite of functions related to discrete-time discrete-state Markov Chains
2013-05-28	dtw	Dynamic time warping algorithms
2013-05-28	fitTetra	fitTetra is an R package for assigning tetraploid genotype scores
2013-05-28	gdsfmt	CoreArray Genomic Data Structure (GDS) R Interface
2013-05-28	ODMconverter	tools to convert ODM files
2013-05-28	RVtests	Rare Variant Tests
2013-05-28	seqminer	Efficiently Read Sequencing Data (VCF format, METAL format) into R
2013-05-28	treemap	Treemap visualization
2013-05-28	TSclust	Time series clustering utilities
2013-05-28	VSURF	Variable Selection Using Random Forests
2013-05-27	betategarch	Estimation and simulation of first-order Beta-t-EGARCH models
2013-05-27	BRugs	R interface to the OpenBUGS MCMC software
2013-05-27	C50	C5.0 Decision Trees and Rule-Based Models
2013-05-27	compareODM	comparison of medical forms in CDISC ODM format
2013-05-27	eba	Elimination-by-Aspects (EBA) Models
2013-05-27	extracat	Categorical Data Analysis and Visualization
2013-05-27	GIGrvg	Random variate generator for the GIG distribution
2013-05-27	hergm	Hierarchical Exponential-Family Random Graph Models with Local Dependence
2013-05-27	kernelFactory	Kernel Factory: An ensemble of kernel Machines
2013-05-27	pander	An R pandoc writer
2013-05-27	SesIndexCreatoR	Computation and visualization of socioeconomic indices and categories distributions
2013-05-27	sft	Functions for Systems Factorial Technology Analysis of Data
2013-05-27	spatstat	Spatial Point Pattern analysis, model-fitting, simulation, tests
2013-05-27	Tides	Tides
2013-05-27	timeROC	Time-dependent ROC curve and AUC for censored survival data
2013-05-26	ALKr	Generate Age-Length Keys for fish populations
2013-05-26	epibase	basic tools for the analysis of disease outbreaks
2013-05-26	gamlss	Generalised Additive Models for Location Scale and Shape
2013-05-26	ggROC	package for roc curve plot with ggplot2
2013-05-26	McSpatial	Nonparametric spatial data analysis
2013-05-26	RSQLite	SQLite interface for R
2013-05-26	wq	Exploring water quality monitoring data
2013-05-25	arulesViz	Visualizing Association Rules and Frequent Itemsets
2013-05-25	FastPCS	R package to compute the FastPCS outlyingness index
2013-05-25	googleVis	Interface between R and the Google Chart Tools
2013-05-25	profdpm	Profile Dirichlet Process Mixtures
2013-05-25	SDD	Serial Dependence Diagrams
2013-05-25	sparsediscrim	Sparse Discriminant Analysis
2013-05-25	SphericalCubature	Numerical integration over spheres and balls in n-dimensions; multivariate polar coordinates
2013-05-25	structSSI	Multiple Testing for Hypotheses with Hierarchical or Group Structure
2013-05-24	arules	Mining Association Rules and Frequent Itemsets
2013-05-24	bayesDem	Graphical User Interface for bayesTFR, bayesLife and bayesPop
2013-05-24	bayesLife	Bayesian Projection of Life Expectancy
2013-05-24	bayesPop	Probabilistic Population Projection
2013-05-24	bayesTFR	Bayesian Fertility Projection
2013-05-24	BSquare	Bayesian Simultaneous Quantile Regression
2013-05-24	compositionsGUI	Graphical User Environment for Compositional Data Analysis
2013-05-24	contrast	A collection of contrast methods
2013-05-24	Demerelate	Functions to calculate relatedness on diploid genetic data
2013-05-24	fastcluster	Fast hierarchical clustering routines for R and Python
2013-05-24	fda	Functional Data Analysis
2013-05-24	lbiassurv	Length-biased correction to survival curve estimation
2013-05-24	migest	Useful R code for the Estimation of Migration
2013-05-24	ORCME	Order Restricted Clustering for Microarray Experiments
2013-05-24	OUwie	Analysis of evolutionary rates in an OU framework
2013-05-24	SparseTSCGM	Sparse time series chain graphical models
2013-05-24	tlnise	Two-level normal independent sampling estimation
2013-05-24	twostageTE	Two-Stage Threshold Estimation
2013-05-23	clpAPI	R Interface to C API of COIN-OR Clp
2013-05-23	cplexAPI	R Interface to C API of IBM ILOG CPLEX
2013-05-23	DCGL	Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data
2013-05-23	glpkAPI	R Interface to C API of GLPK
2013-05-23	Haplin	Analyzing case-parent triad and/or case-control data with SNP haplotypes
2013-05-23	igraph	Network analysis and visualization
2013-05-23	InferenceSMR	Inference about the standardized mortality ratio when evaluating the effect of a screening program on survival
2013-05-23	knitcitations	Citations for knitr markdown files
2013-05-23	MALDIquant	Quantitative Analysis of Mass Spectrometry Data
2013-05-23	missMDA	Handling missing values with/in multivariate data analysis (principal component methods)
2013-05-23	mixsmsn	Fitting finite mixture of scale mixture of skew-normal distributions
2013-05-23	MKmisc	Miscellaneous Functions from M. Kohl
2013-05-23	MPTinR	Analyze Multinomial Processing Tree Models
2013-05-23	mRMRe	R package for parallelized mRMR ensemble feature selection
2013-05-23	pcrsim	Simulation of the forensic DNA process
2013-05-23	RMAWGEN	RMAWGEN (R Multi-site Auto-regressive Weather GENerator), a package to generate daily time series of precipitation and temperature from monthly mean values
2013-05-23	SODC	Optimal Discriminant Clustering(ODC) and Sparse Optimal Discriminant Clustering(SODC)
2013-05-23	spTimer	Spatio-Temporal Bayesian Modelling Using R
2013-05-23	strvalidator	Internal validation of forensic STR kits made easy with strvalidator
2013-05-23	visreg	Visualization of regression models
2013-05-22	adephylo	adephylo: exploratory analyses for the phylogenetic comparative method
2013-05-22	BayesLogit	Logistic Regression
2013-05-22	biom	An interface package (beta) for the BIOM file format
2013-05-22	CompRandFld	Composite-likelihood based Analysis of Random Fields
2013-05-22	cyphid	Cycle and Phase Identification for mastication data
2013-05-22	diveRsity	Genetic diversity partition statistics and Informative locus selection using Fst, Gst, Dest(Jost Chao) G'st and In
2013-05-22	growcurves	Bayesian semi and nonparametric growth curve models that additionally include multiple membership random effects
2013-05-22	mets	Analysis of Multivariate Event Times
2013-05-22	parallelize.dynamic	Automate parallelization of function calls by means of dynamic code analysis
2013-05-22	PopGenReport	PopGen: A simple way to analyse and visualize population genetic data
2013-05-22	recluster	Solving biasing produced by tied values in cluster analysis
2013-05-22	SnowballC	Snowball stemmers based on the C libstemmer UTF-8 library
2013-05-22	support.BWS	Basic functions for supporting an implementation of best-worst scaling
2013-05-22	trueskill	Implementation the TrueSkill algorithm in R
2013-05-22	visualize	Graph Probability Distributions with User Supplied Parameters and Stats
2013-05-21	copula	Multivariate Dependence with Copulas
2013-05-21	exactRankTests	Exact Distributions for Rank and Permutation Tests
2013-05-21	fastICA	FastICA Algorithms to perform ICA and Projection Pursuit
2013-05-21	FastImputation	Learn from training data then quickly fill in missing data
2013-05-21	fwi.fbp	Fire Weather Index System and Fire Behaviour Prediction System Calculations
2013-05-21	gazetools	Gaze Tools
2013-05-21	geospacom	Helper package to facilitate the generation of distance matrices used in the package spacom
2013-05-21	hint	Tools for hypothesis testing based on Hypergeometric Intersection distributions
2013-05-21	lava	Linear Latent Variable Models
2013-05-21	MasterBayes	ML and MCMC Methods for Pedigree Reconstruction and Analysis
2013-05-21	miscFuncs	Miscellaneous Useful Functions
2013-05-21	overlap	Estimates of coefficient of overlapping for animal activity patterns
2013-05-21	rPlant	R interface to the iPlant Discovery Environment
2013-05-21	SetMethods	SetMethods: A Package Companion to "Set-Theoretic Methods for the Social Sciences"
2013-05-21	SharpeR	Statistical significance of Sharpe ratio
2013-05-21	xlsx	Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files
2013-05-21	xlsxjars	Package required POI jars for the xlsx package
2013-05-20	abctools	Tools for ABC analyses
2013-05-20	cldr	Language Identifier based on CLD library
2013-05-20	Comp2ROC	Compare two ROC curves that intersect
2013-05-20	gridSVG	Export grid graphics as SVG
2013-05-20	nloptwrap	Wrapper for Package nloptr
2013-05-20	pmr	Probability Models for Ranking Data
2013-05-20	pom	POM - Patch Occupancy Models
2013-05-20	RadialPlotter	Package for statistical age models analysis in optically stimulated luminescence dating
2013-05-20	Rlabkey	Data exchange between R and LabKey Server
2013-05-20	SMNCensReg	Fitting univariate censored regression model under the scale mixture of normal distributions
2013-05-20	SSDforR	SSD for R to analyze single system data
2013-05-20	tdm	A Tool for Therapeutic Drug Monitoring (TDM)
2013-05-19	dielectric	Defines some physical constants and dielectric functions commonly used in optics, plasmonics
2013-05-19	discrimARTs	Discrimination of Alternative Reproductive Tactics (ARTs)
2013-05-19	FNN	Fast Nearest Neighbor Search Algorithms and Applications
2013-05-19	lessR	Less Code, More Results
2013-05-19	msgpackR	A library to serialize or unserialize data in MessagePack format
2013-05-19	oce	Analysis of Oceanographic data
2013-05-19	pnmtrem	Probit-Normal Marginalized Transition Random Effects Models
2013-05-19	probsvm	probsvm: Class probability estimation for Support Vector Machines
2013-05-19	TCC	TCC: Differential expression analysis for tag count data with robust normalization strategies
2013-05-18	biwavelet	Conduct univariate and bivariate wavelet analyses
2013-05-18	CfEstimateQuantiles	Estimate quantiles using any order Cornish-Fisher expansion
2013-05-18	foreign	Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase, ..
2013-05-18	parfm	Parametric Frailty Models
2013-05-18	qdap	Bridging the gap between qualitative data and quantitative analysis
2013-05-18	rje	Miscellaneous useful functions
2013-05-18	SMFI5	R functions and data from Chapter 5 of 'Statistical Methods for Financial Engineering'
2013-05-18	wpp2008	World Population Prospects 2008
2013-05-17	blm	Binomial linear and linear-expit regression
2013-05-17	caret	Classification and Regression Training
2013-05-17	CDLasso	Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression
2013-05-17	fanplot	Visualisation of sequential probability distributions using fan charts
2013-05-17	GenOrd	Simulation of ordinal and discrete variables with given correlation matrix and marginal distributions
2013-05-17	installr	Functions for updating and installing a new version of R and other software - from R
2013-05-17	multcomp	Simultaneous Inference in General Parametric Models
2013-05-17	phonTools	Functions for phonetics in R
2013-05-17	Quandl	Quandl Data Connection
2013-05-17	readMETEO	Weather Data Download from WWW.METEOGALICIA.COM
2013-05-16	aftgee	Accelerated Failure Time Model with Generalized Estimating Equations
2013-05-16	AICcmodavg	Model selection and multimodel inference based on (Q)AIC(c)
2013-05-16	biglm	bounded memory linear and generalized linear models
2013-05-16	chillR	Statistical methods for phenology analysis in temperate fruit trees
2013-05-16	ddalpha	DDalpha-Classifier
2013-05-16	dlnm	Distributed Lag Non-linear Models
2013-05-16	Dominance	ADI (average dominance index) and social network graphs with dual directions
2013-05-16	GenABEL	genome-wide SNP association analysis
2013-05-16	grnn	General regression neural network
2013-05-16	gss	General Smoothing Splines
2013-05-16	lavaan.survey	Complex survey structural equation modeling (SEM)
2013-05-16	logistf	Firth's bias reduced logistic regression
2013-05-16	MDSGUI	A GUI for interactive MDS in R
2013-05-16	optmatch	Functions for optimal matching
2013-05-16	plotKML	Visualization of spatial and spatio-temporal objects in Google Earth
2013-05-16	PurBayes	Bayesian Estimation of Tumor Purity and Clonality
2013-05-16	ROCR	Visualizing the performance of scoring classifiers
2013-05-16	SEMID	Identifiability of linear structural equation models
2013-05-16	sequences	Generic and biological sequences
2013-05-16	sgof	Multiple hypotheses testing
2013-05-16	snpStatsWriter	Flexible writing of snpStats objects to flat files
2013-05-16	spsmooth	spsmooth: An Extension Package for 'mgcv'
2013-05-16	xkcd	Plotting ggplot2 graphics in a XKCD style
2013-05-15	ABCExtremes	ABC Extremes
2013-05-15	BayesComm	Bayesian community ecology analysis
2013-05-15	CDM	Cognitive Diagnosis Modeling
2013-05-15	corpcor	Efficient Estimation of Covariance and (Partial) Correlation
2013-05-15	DDD	Diversity-dependent diversification
2013-05-15	Epi	A package for statistical analysis in epidemiology
2013-05-15	flexsurv	Flexible parametric survival models
2013-05-15	msm	Multi-state Markov and hidden Markov models in continuous time
2013-05-15	NMF	Algorithms and framework for Nonnegative Matrix Factorization (NMF)
2013-05-15	Nozzle.R1	Nozzle Reports
2013-05-15	PBSadmb	ADMB for R Using Scripts or GUI
2013-05-15	RDSTK	An R wrapper for the Data Science Toolkit API
2013-05-14	bmrm	Bundle Methods for Regularized Risk Minimization Package
2013-05-14	BTSPAS	Bayesian Time-Strat. Population Analysis
2013-05-14	diagram	Functions for visualising simple graphs (networks), plotting flow diagrams
2013-05-14	dsample	Discretization-based Direct Random Sample Generation
2013-05-14	llama	Leveraging Learning to Automatically Manage Algorithms
2013-05-14	multitaper	Multitaper Spectral Analysis
2013-05-14	ROracle	OCI based Oracle database interface for R
2013-05-14	SLHD	Maximin-Distance (Sliced) Latin Hypercube Designs
2013-05-14	sos4R	An R client for the OGC Sensor Observation Service
2013-05-14	Tinflex	Tinflex - Universal non-uniform random number generator
2013-05-14	vines	Multivariate Dependence Modeling with Vines
2013-05-13	bvpSolve	Solvers for boundary value problems of ordinary differential equations
2013-05-13	csSAM	csSAM - cell-specific Significance Analysis of Microarrays
2013-05-13	eha	Event History Analysis
2013-05-13	geoscale	Geological timescale plot
2013-05-13	hgam	High-dimensional Additive Modelling
2013-05-13	lmomco	L-moments, Censored L-moments, Trimmed L-moments, L-comoments, and Many Distributions
2013-05-13	OpenMPController	Control number of OpenMP threads dynamically
2013-05-13	pheno2geno	Pheno2Geno - Generating genetic markers and maps from molecular phenotypes
2013-05-13	RcppOctave	Seamless Interface to Octave – and Matlab
2013-05-13	samplingVarEst	Sampling Variance Estimation
2013-05-13	SemiMarkov	Multi-States Semi-Markov Models
2013-05-13	statnet	Software tools for the Statistical Analysis of Network Data
2013-05-13	survMisc	Miscellaneous functions for survival data
2013-05-13	truncSP	Semi-parametric estimators of truncated regression models
2013-05-13	tseries	Time series analysis and computational finance
2013-05-12	coefplot	Plots Coefficients from Fitted Models
2013-05-12	energy	E-statistics (energy statistics)
2013-05-12	mice	Multivariate Imputation by Chained Equations
2013-05-12	pkgmaker	Package development utilities
2013-05-11	bfa	Bayesian Factor Analysis
2013-05-11	datamart	Unified access to various data sources
2013-05-11	ergmharris	Local Health Department network data set
2013-05-11	lavaan	Latent Variable Analysis
2013-05-11	polyCub	Cubature over Polygonal Domains
2013-05-11	sm	Smoothing methods for nonparametric regression and density estimation
2013-05-10	ArDec	Time series autoregressive-based decomposition
2013-05-10	copBasic	Basic Theoretical Copula, Empirical Copula, and Various Utility Functions
2013-05-10	covRobust	Robust Covariance Estimation via Nearest Neighbor Cleaning
2013-05-10	CoxBoost	Cox models by likelihood based boosting for a single survival endpoint or competing risks
2013-05-10	GAMBoost	Generalized linear and additive models by likelihood based boosting
2013-05-10	gbm	Generalized Boosted Regression Models
2013-05-10	hglm	Hierarchical Generalized Linear Models
2013-05-10	JGR	JGR - Java GUI for R
2013-05-10	multilevelPSA	Multilevel Propensity Score Analysis
2013-05-10	nCal	Nonlinear Calibration
2013-05-10	RcppProgress	An interruptible progress bar with OpenMP support for c++ in R packages
2013-05-10	Rmalschains	Continuous Optimization using Memetic Algorithms with Local Search Chains (MA-LS-Chains) in R
2013-05-10	robustgam	Robust Estimation for Generalized Additive Models
2013-05-10	SensoMineR	Sensory data analysis with R
2013-05-09	arm	Data Analysis Using Regression and Multilevel/Hierarchical Models
2013-05-09	DBI	R Database Interface
2013-05-09	DWD	DWD implementation based on A IPM SOCP solver
2013-05-09	FactoMineR	Multivariate Exploratory Data Analysis and Data Mining with R
2013-05-09	gputools	A few GPU enabled functions
2013-05-09	HMP	Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP
2013-05-09	MetaSKAT	Meta analysis for SNP-set (Sequence) Kernel Association Test
2013-05-09	MplusAutomation	Automating Mplus Model Estimation and Interpretation
2013-05-09	NHEMOtree	Non-hierarchical evolutionary multi-objective tree learner to perform cost-sensitive classification
2013-05-09	PBSddesolve	Solver for Delay Differential Equations
2013-05-09	PBSmapping	Mapping Fisheries Data and Spatial Analysis Tools
2013-05-09	RISmed	Download content from NCBI databases
2013-05-09	spate	Spatio-temporal modeling of large data using a spectral SPDE approach
2013-05-09	SPEI	Calculation of the Standardised Precipitation-Evapotranspiration Index
2013-05-09	timeline	Timelines for a Grammar of Graphics
2013-05-09	wpp2010	World Population Prospects 2010
2013-05-09	yhatr	R binder for the Yhat API
2013-05-08	BayesBridge	Bridge Regression
2013-05-08	covTest	Computes covariance test for adaptive linear modelling
2013-05-08	crp.CSFP	CreditRisk+ portfolio model
2013-05-08	dave	Functions for "Data Analysis in Vegetation Ecology"
2013-05-08	eventstudies	Event study and extreme event analysis
2013-05-08	intergraph	Coercion routines for network data objects in R
2013-05-08	lisrelToR	Import output from LISREL into R
2013-05-08	Momocs	Shape Analysis of Outlines
2013-05-08	networkDynamic	Dynamic Extensions for Network Objects
2013-05-08	qgraph	Network representations of relationships in data
2013-05-08	rapport	A report templating system
2013-05-08	refGenome	Managing data from reference genomes (UCSC, ensembl)
2013-05-08	rspa	Adapt numerical records to fit (in)equality restrictions with the Successive Projection Algorithm
2013-05-08	semPlot	Path diagrams and visual analysis of various SEM packages' output
2013-05-08	spacetime	classes and methods for spatio-temporal data
2013-05-07	BayesVarSel	Bayesian Variable selection in Linear Models
2013-05-07	bear	Average bioequivalence and bioavailability data analysis tool
2013-05-07	Bergm	Bayesian analysis for exponential random graph models
2013-05-07	CircNNTSR	CircNNTSR: An R package for the statistical analysis of circular data using nonnegative trigonometric sums (NNTS) models
2013-05-07	corrsieve	CorrSieve
2013-05-07	cshapes	CShapes Dataset and Utilities
2013-05-07	ExpDes	Experimental Designs package
2013-05-07	ExpDes.pt	Pacote Experimental Designs (Portuguese)
2013-05-07	GuardianR	Guardian API Wrapper
2013-05-07	HSAUR	A Handbook of Statistical Analyses Using R
2013-05-07	HSAUR2	A Handbook of Statistical Analyses Using R (2nd Edition)
2013-05-07	hts	Hierarchical and grouped time series
2013-05-07	InteractiveIGraph	interactive network analysis and visualization
2013-05-07	ivivc	A data analysis tool for in vitro-in vivo correlation (IVIVC)
2013-05-07	PIN	Estimates the parameters of a trading-tree model for the computation of the probability of informed trading
2013-05-07	PKfit	A Data Analysis Tool for Pharmacokinetics
2013-05-07	pnn	Probabilistic neural networks
2013-05-07	qtlhot	Inference for QTL Hotspots
2013-05-07	rbamtools	Reading, manipulation and writing BAM (Binary alignment) files
2013-05-07	rgenoud	R version of GENetic Optimization Using Derivatives
2013-05-07	rtop	Interpolation of data with variable spatial support
2013-05-07	SpatialTools	Tools for spatial data analysis
2013-05-07	spcadjust	Functions for calibrating control charts
2013-05-07	stab	data analysis of drug stability for shelf life estimation
2013-05-07	wgaim	Whole Genome Average Interval Mapping for QTL detection using mixed models
2013-05-06	aster	Aster Models
2013-05-06	BDgraph	Graph determination based on birth-death MCMC
2013-05-06	bdoc	Bayesian Discrete Ordered Classification of DNA Barcodes
2013-05-06	CARBayes	Spatial areal unit modelling
2013-05-06	CCAGFA	Bayesian canonical correlation analysis and group factor analysis
2013-05-06	CONOR	CONOR
2013-05-06	GibbsACOV	Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models
2013-05-06	ltmle	Longitudinal Targeted Maximum Likelihood Estimation
2013-05-06	simex	SIMEX- and MCSIMEX-Algorithm for measurement error models
2013-05-05	fftwtools	fftwtools
2013-05-05	forensim	Statistical tools for the interpretation of forensic DNA mixtures
2013-05-05	RForcecom	RForcecom provides the connection to Force.com and Salesforce.com from R
2013-05-05	timetools	provides objects and tools to manipulate irregular heterogeneous time data and subtime data
2013-05-04	gsbDesign	Group Sequential Bayes Design
2013-05-04	HydroMe	R codes for estimating water retention and infiltration model parameters using experimental data
2013-05-04	PReMiuM	Dirichlet Process Bayesian Clustering, Profile Regression
2013-05-03	acepack	ace() and avas() for selecting regression transformations
2013-05-03	aroma.affymetrix	Analysis of large Affymetrix microarray data sets
2013-05-03	bnpmr	Bayesian monotonic nonparametric regression
2013-05-03	diffdepprop	Calculates Confidence Intervals for two Dependent Proportions
2013-05-03	dma	Dynamic model averaging
2013-05-03	HAC	Estimation, simulation and visualization of Hierarchical Archimedean Copulae (HAC)
2013-05-03	Hmisc	Harrell Miscellaneous
2013-05-03	iteRates	Parametric rate comparison
2013-05-03	mixsep	Forensic Genetics DNA Mixture Separation
2013-05-03	multisensi	Multivariate Sensitivity Analysis
2013-05-03	semTools	Useful tools for structural equation modeling
2013-05-03	sensitivity	Sensitivity Analysis
2013-05-03	TPmsm	Estimation of transitions probabilities in multistate models
2013-05-03	twang	Toolkit for Weighting and Analysis of Nonequivalent Groups
2013-05-02	baseline	Baseline Correction of Spectra
2013-05-02	BBmisc	Miscellaneous helper functions for B. Bischl
2013-05-02	bigRR	Generalized Ridge Regression (with special advantage for p >> n cases)
2013-05-02	copulaedas	Estimation of Distribution Algorithms Based on Copulas
2013-05-02	DendSer	Dendrogram seriation: ordering for visualisation
2013-05-02	matrixStats	Methods that apply to rows and columns of a matrix
2013-05-02	multmod	Testing of multiple outcomes
2013-05-02	OrdLogReg	Ordinal Logic Regression
2013-05-02	pocrm	Dose-finding in drug combination Phase I trials using the partial order continual reassessment method (PO-CRM)
2013-05-02	PPtree	Projection pursuit classification tree
2013-05-02	RAP	Reversal Association Pattern
2013-05-02	rgdal	Bindings for the Geospatial Data Abstraction Library
2013-05-02	rgeos	Interface to Geometry Engine - Open Source (GEOS)
2013-05-02	robustHD	Robust methods for high-dimensional data
2013-05-02	SDBP	Calculate the third-order accurate Unbiased P-values via Speedy double bootstrap method
2013-05-02	selectiongain	Expected gain from multi-stage selection and its optimization
2013-05-02	SNPMClust	A bivariate Gaussian genotype clustering and calling algorithm for Illumina microarrays
2013-05-02	spcosa	Spatial Coverage Sampling and Random Sampling from Compact Geographical Strata
2013-05-02	spgrass6	Interface between GRASS 6+ geographical information system and R
2013-05-02	vardiag	A package for variogram diagnostics
2013-05-01	bqtl	Bayesian QTL mapping toolkit
2013-05-01	CountsEPPM	Mean and variance modeling of count data
2013-05-01	downloader	A package for downloading files over http and https
2013-05-01	fBasics	Rmetrics - Markets and Basic Statistics
2013-05-01	fExtremes	Rmetrics - Extreme Financial Market Data
2013-05-01	fGarch	Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
2013-05-01	gains	Gains Table Package
2013-05-01	GGEBiplotGUI	GGEBiplotGUI: Interactive GGE Biplots in R
2013-05-01	HLMdiag	Diagnostic tools for hierarchical (multilevel) linear models
2013-05-01	mclust	Normal Mixture Modeling for Model-Based Clustering, Classification, and Density Estimation
2013-05-01	MCMCpack	Markov chain Monte Carlo (MCMC) Package
2013-05-01	networksis	Simulate bipartite graphs with fixed marginals through sequential importance sampling
2013-05-01	phylobase	Base package for phylogenetic structures and comparative data
2013-05-01	RnavGraph	Using graphs as a navigational infrastructure
2013-05-01	RnavGraphImageData	Some image data used in the RnavGraph package demos
2013-05-01	sdprisk	Measures of Risk for the Compound Poisson Risk Process with Diffusion
2013-05-01	sn	The skew-normal and skew-t distributions
2013-05-01	tagcloud	Tag Clouds
2013-05-01	timeDate	Rmetrics - Chronological and Calendar Objects
2013-05-01	timeSeries	Rmetrics - Financial Time Series Objects
2013-04-30	cvxclustr	Splitting methods for convex clustering
2013-04-30	geeM	Fit Generalized Estimating Equations
2013-04-30	lemma	Laplace approximated EM Microarray Analysis
2013-04-30	lqmm	Linear Quantile Mixed Models
2013-04-30	MAMA	Meta-Analysis of MicroArray
2013-04-30	PBSmodelling	GUI Tools Made Easy: Interact with Models, Explore Data, Give Dynamic Presentations
2013-04-30	phom	Persistent Homology in R
2013-04-30	PhViD	PhViD: an R package for PharmacoVigilance signal Detection
2013-04-30	randomForestSRC	Random Forests for Survival, Regression and Classification (RF-SRC)
2013-04-30	robustloggamma	Robust estimation of the generalized log gamma model
2013-04-30	SAMURAI	Sensitivity Analysis of a Meta-analysis with Unpublished but Registered Analytical Investigations
2013-04-30	sanon	Stratified Analysis with Nonparametric covariable adjustment
2013-04-29	AID	An R Package to Estimate Box-Cox Power Transformation Parameter
2013-04-29	bgeva	Binary Generalized Extreme Value Additive Models
2013-04-29	CAMAN	Finite Mixture Models and meta-analysis tools - based on C.A.MAN
2013-04-29	DandEFA	Dandelion Plot for R-mode Exploratory Factor Analysis
2013-04-29	EMA	Easy Microarray data Analysis
2013-04-29	endorse	R Package for Analyzing Endorsement Experiments
2013-04-29	localgauss	Estimating local Gaussian parameters
2013-04-29	nloptr	R interface to NLopt
2013-04-29	powerMediation	Power/Sample size calculation for mediation analysis
2013-04-29	rrcov	Scalable Robust Estimators with High Breakdown Point
2013-04-29	SemiParBIVProbit	Semiparametric Bivariate Probit Modelling
2013-04-29	tseriesChaos	Analysis of nonlinear time series
2013-04-29	twitteR	R based Twitter client
2013-04-29	usl	Analyze system scalability with the Universal Scalability Law
2013-04-28	betareg	Beta Regression
2013-04-28	gmodels	Various R programming tools for model fitting
2013-04-28	GoFKernel	GoFKernel: Testing Goodness-of-fit with the Kernel Density Estimator
2013-04-28	Luminescence	Package for Luminescence Dating data analysis
2013-04-28	MALDIquantForeign	Import/Export routines for MALDIquant
2013-04-28	readBrukerFlexData	Reads mass spectrometry data in Bruker *flex format
2013-04-28	rgl	3D visualization device system (OpenGL)
2013-04-28	sda	Shrinkage Discriminant Analysis and CAT Score Variable Selection
2013-04-28	whisker	{{mustache}} for R, logicless templating
2013-04-27	cba	Clustering for Business Analytics
2013-04-27	datacheck	Tools for checking data consistency
2013-04-27	ergm.count	Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges
2013-04-27	ergm.userterms	User-specified terms for the statnet suite of packages
2013-04-27	Matching	Multivariate and Propensity Score Matching with Balance Optimization
2013-04-27	MicroStrategyR	MicroStrategyR Package
2013-04-27	mRm	An R package for conditional maximum likelihood estimation in mixed Rasch models
2013-04-27	postgwas	GWAS Post-Processing Utilities
2013-04-27	SEERaBomb	SEER Setup and Use with A-Bomb Data
2013-04-27	tergm	Fit, Simulate and Diagnose Models for Network Evoluation based on Exponential-Family Random Graph Models
2013-04-27	VGAM	Vector Generalized Linear and Additive Models
2013-04-26	Biograph	Explore life histories
2013-04-26	coin	Conditional Inference Procedures in a Permutation Test Framework
2013-04-26	frailtypack	General Frailty models: shared, joint and nested frailty models with prediction
2013-04-26	FuzzyToolkitUoN	Type 1 Fuzzy Logic Toolkit
2013-04-26	LogicReg	Logic Regression
2013-04-26	metacom	Analysis of the 'elements of metacommunity structure'
2013-04-26	poppr	an R package for genetic analysis of populations with mixed reproduction
2013-04-26	prodlim	Product Limit Estimation for event history and survival analysis
2013-04-26	rehh	Searching for footprints of selection using Haplotype Homozygosity based tests
2013-04-26	ROAuth	R interface for OAuth
2013-04-25	adehabitatHR	Home range Estimation
2013-04-25	aroma.core	Core methods and classes used by aroma.* packages part of The Aroma Framework
2013-04-25	Boruta	A wrapper algorithm for all-relevant feature selection
2013-04-25	CDVine	Statistical inference of C- and D-vine copulas
2013-04-25	coefficientalpha	Robust Cronbach's alpha with missing and non-normal data
2013-04-25	dbEmpLikeNorm	Test for joint assessment of normality
2013-04-25	dynlm	Dynamic Linear Regression
2013-04-25	ergm	Fit, Simulate and Diagnose Exponential-Family Models for Networks
2013-04-25	FHtest	Tests for right and interval-censored survival data based on the Fleming-Harrington class
2013-04-25	gof	Model-diagnostics based on cumulative residuals
2013-04-25	hsmm	Hidden Semi Markov Models
2013-04-25	LaF	Fast access to large ASCII files
2013-04-25	princurve	Fits a Principal Curve in Arbitrary Dimension
2013-04-25	RcmdrPlugin.EACSPIR	Plugin de R-Commander para el manual EACSPIR
2013-04-25	RNetLogo	Provides an interface to the agent-based modelling platform NetLogo
2013-04-25	runjags	Interface utilities for MCMC models in Just Another Gibbs Sampler (JAGS) using parallel and distributed computing methods
2013-04-25	Segmentor3IsBack	A Fast Segmentation Algorithm
2013-04-25	sendplot	Tool for sending interactive plots with tool-tip content
2013-04-25	SpherWave	Spherical Wavelets and SW-based Spatially Adaptive Methods
2013-04-25	StVAR	Student's t Vector Autoregression (StVAR)
2013-04-24	DetSel	A computer program to detect markers responding to selection
2013-04-24	DiceDesign	Designs of Computer Experiments
2013-04-24	dirmult	Estimation in Dirichlet-Multinomial distribution
2013-04-24	driftsel	Distinguishing drift and natural selection as causes of phenotypic differentiation
2013-04-24	gam	Generalized Additive Models
2013-04-24	GSIF	Global Soil Information Facilities
2013-04-24	lars	Least Angle Regression, Lasso and Forward Stagewise
2013-04-24	limSolve	Solving Linear Inverse Models
2013-04-24	list	Statistical Methods for the Item Count Technique and List Experiment
2013-04-24	logspline	Logspline density estimation routines
2013-04-24	polspline	Polynomial spline routines
2013-04-24	quantreg	Quantile Regression
2013-04-24	RAFM	Admixture F-model
2013-04-24	reglogit	Simulation-based Regularized Logistic Regression
2013-04-24	rootSolve	Nonlinear root finding, equilibrium and steady-state analysis of ordinary differential equations
2013-04-24	spam	SPArse Matrix
2013-04-24	SparseM	Sparse Linear Algebra
2013-04-23	aroma.cn	Copy-number analysis of large microarray data sets
2013-04-23	Bchron	Bayesian radiocarbon chronologies and relative sea level analysis
2013-04-23	deSolve	General solvers for initial value problems of ordinary differential equations (ODE), partial differential equations (PDE), differential algebraic equations (DAE), and delay differential equations (DDE)
2013-04-23	GENEAread	Package For Reading Binary files
2013-04-23	lubridate	Make dealing with dates a little easier
2013-04-23	R2G2	Converting R CRAN outputs into Google Earth
2013-04-23	rFerns	Random ferns classifier
2013-04-23	Rgbp	Bayesian Hierarchical Modeling and Frequentist Method Check
2013-04-23	siar	Stable Isotope Analysis in R
2013-04-23	superbiclust	Generating Robust Biclusters from a Bicluster Set (Ensemble Biclustering)
2013-04-23	VGAMdata	Data supporting the VGAM package
2013-04-22	FFD	Freedom From Disease
2013-04-22	intamap	procedures for automated interpolation
2013-04-22	ModelGood	Validation of risk prediction models
2013-04-22	move	Visualizing and analyzing animal track data
2013-04-22	sp	classes and methods for spatial data
2013-04-22	svSocket	SciViews GUI API - R Socket Server
2013-04-22	TESS	Fast simulation of reconstructed phylogenetic trees under time-dependent birth-death processes
2013-04-21	causalsens	Selection Bias Approach to Sensitivity Analysis for Causal Effects
2013-04-21	fields	Tools for spatial data
2013-04-21	mgraph	Graphing map attributes and non-map variables in R
2013-04-21	mirt	Multidimensional Item Response Theory
2013-04-21	pitchRx	Tools for Collecting and Visualizing Major League Baseball PITCHf/x Data
2013-04-21	PSCBS	Analysis of Parent-Specific DNA Copy Numbers
2013-04-21	surveillance	Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena
2013-04-20	bda	Density Estimation for Binned/Weighted Data
2013-04-20	cdb	Reading and Writing Constant DataBases
2013-04-20	DEoptim	Global optimization by Differential Evolution
2013-04-20	ibdreg	Regression Methods for IBD Linkage With Covariates
2013-04-20	lmtest	Testing Linear Regression Models
2013-04-20	locfit	Local Regression, Likelihood and Density Estimation
2013-04-20	Rcsdp	R interface to the CSDP semidefinite programming library
2013-04-20	sltl	Time Series Decomposition using Loess and Harmonic Regression
2013-04-19	bbo	Biogeography-Based Optimization
2013-04-19	boussinesq	Analytic Solutions for (ground-water) Boussinesq Equation
2013-04-19	FrF2	Fractional Factorial designs with 2-level factors
2013-04-19	FrF2.catlg128	Catalogues of resolution IV 128 run 2-level fractional factorials up to 33 factors that do have 5-letter words
2013-04-19	geometry	Mesh generation and surface tesselation
2013-04-19	intamapInteractive	procedures for automated interpolation - methods only to be used interactively, not included in intamap package
2013-04-19	kernlab	Kernel-based Machine Learning Lab
2013-04-19	lasso2	L1 constrained estimation aka ‘lasso’
2013-04-19	MonetDB.R	Connect MonetDB to R
2013-04-19	mvpart	Multivariate partitioning
2013-04-19	nor1mix	Normal (1-d) Mixture Models (S3 Classes and Methods)
2013-04-19	PairedData	Paired Data Analysis
2013-04-19	repolr	Repeated measures proportional odds logistic regression
2013-04-19	SamplerCompare	A framework for comparing the performance of MCMC samplers
2013-04-19	sms	Spatial Microsimulation
2013-04-19	spatialCovariance	Computation of spatial covariance matrices for data on rectangles
2013-04-19	TestScorer	Scores tests, shows and saves the results
2013-04-18	aqp	Algorithms for Quantitative Pedology
2013-04-18	deldir	Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
2013-04-18	drc	Analysis of dose-response curves
2013-04-18	edesign	Maximum entropy sampling
2013-04-18	glmdm	R Code for Simulation of GLMDM
2013-04-18	hexbin	Hexagonal Binning Routines
2013-04-18	hmm.discnp	Hidden Markov models with discrete non-parametric observation distributions
2013-04-18	Iso	Functions to perform isotonic regression
2013-04-18	lokern	Kernel Regression Smoothing with Local or Global Plug-in Bandwidth
2013-04-18	madsim	A Flexible Microarray Data Simulation Model
2013-04-18	maxstat	Maximally Selected Rank Statistics
2013-04-18	mediation	R Package for Causal Mediation Analysis
2013-04-18	monomvn	Estimation for multivariate normal and Student-t data with monotone missingness
2013-04-18	opm	Tools for analysing OmniLog(R) Phenotype Microarray data
2013-04-18	palaeoSig	Significance tests for palaeoenvironmental reconstructions
2013-04-18	protViz	Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
2013-04-18	qpcR	Modelling and analysis of real-time PCR data
2013-04-18	qrfactor	Simultaneous simulation of Q and R mode factor analyses with Spatial data
2013-04-18	regress	Gaussian linear models with linear covariance structure
2013-04-18	relax	relax – R Editor for Literate Analysis and lateX
2013-04-18	review	Manage Review Logs
2013-04-18	RMessenger	IM Client for R
2013-04-18	RSAGA	SAGA Geoprocessing and Terrain Analysis in R
2013-04-18	soilDB	Soil Database Interface
2013-04-18	spikeslab	Prediction and variable selection using spike and slab regression
2013-04-18	threg	Threshold Regression
2013-04-17	catspec	Special models for categorical variables
2013-04-17	CheckDigit	Calculate and verify check digits
2013-04-17	cmprsk	Subdistribution Analysis of Competing Risks
2013-04-17	decon	Deconvolution Estimation in Measurement Error Models
2013-04-17	devtools	Tools to make developing R code easier
2013-04-17	discreteRV	discreteRV
2013-04-17	DnE	DnE(Distribution and Equation)
2013-04-17	Familias	Probabilities for Pedigrees given DNA data
2013-04-17	GAIPE	Graphical Extension with Accuracy in Parameter Estimation (GAIPE)
2013-04-17	intsvy	International Assessment Data Manager
2013-04-17	lpridge	Local Polynomial (Ridge) Regression
2013-04-17	mvbutils	Workspace organization, code and documentation editing, package prep and editing, etc
2013-04-17	nbpMatching	functions for non-bipartite optimal matching
2013-04-17	pan	Multiple imputation for multivariate panel or clustered data
2013-04-17	pomp	Statistical inference for partially observed Markov processes
2013-04-17	portes	Portmanteau Tests for Univariate and Multivariate Time Series Models
2013-04-17	quadprog	Functions to solve Quadratic Programming Problems
2013-04-17	R.filesets	Easy handling of and access to files organized in structured directories
2013-04-17	rmp	Rounded Mixture Package. Performs probability mass function estimation with Dirichlet process mixtures of rounded kernels
2013-04-17	stochvol	Efficient Bayesian Inference for Stochastic Volatility (SV) Models
2013-04-17	TBSSurvival	TBS Model R package
2013-04-17	VBLPCM	Variational Bayes Latent Position Cluster Model for networks
2013-04-16	appell	Compute Appell's F1 hypergeometric function
2013-04-16	c060	Additional variable selection, model validation and parameter tuning functions for glmnet models
2013-04-16	clinfun	Clinical Trial Design and Data Analysis Functions
2013-04-16	CVST	Fast Cross-Validation via Sequential Testing
2013-04-16	DoseFinding	Planning and Analyzing Dose Finding experiments
2013-04-16	faoutlier	Influential case detection methods for factor analysis and SEM
2013-04-16	FRB	Fast and Robust Bootstrap
2013-04-16	FWDselect	Selecting variables in regression models
2013-04-16	genMOSS	An implementation of the MOSS algorithm for the analysis of GWAS data
2013-04-16	JGL	Performs the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes
2013-04-16	LatticeKrig	Multiresolution Kriging based on Markov random fields
2013-04-16	lmeNB	Fit negative binomial mixed-effect regression model
2013-04-16	lmeNBBayes	Sample from the posterior of the negative binomial mixed-effect regression model. The random effect is modeled with DP mixture of beta distributions
2013-04-16	OAIHarvester	Harvest Metadata Using OAI-PMH v2.0
2013-04-16	phenex	Auxiliary functions for phenological data analysis
2013-04-16	PRISMA	Protocol Inspection and State Machine Analysis
2013-04-16	pspline	Penalized Smoothing Splines
2013-04-16	qtlbim	QTL Bayesian Interval Mapping
2013-04-16	RGraphics	Data and Functions from the book R Graphics, Second Edition
2013-04-16	R.matlab	Read and write of MAT files together with R-to-Matlab connectivity
2013-04-16	RWeka	R/Weka interface
2013-04-16	spacejam	Sparse conditional graph estimation with joint additive models
2013-04-16	sparseLTSEigen	RcppEigen back end for sparse least trimmed squares regression
2013-04-16	texreg	Conversion of R regression output to LaTeX or HTML tables
2013-04-16	tspmeta	Instance feature calculation and evolutionary instance generation for the traveling salesman problem
2013-04-16	VennDiagram	Generate high-resolution Venn and Euler plots
2013-04-15	earth	Multivariate Adaptive Regression Spline Models
2013-04-15	excel.link	Convenient way to work with data in Microsoft Excel
2013-04-15	ffbase	Basic statistical functions for package ff
2013-04-15	GGally	Extension to ggplot2
2013-04-15	grplasso	Fitting user specified models with Group Lasso penalty
2013-04-15	lme4	Linear mixed-effects models using S4 classes
2013-04-15	paramlink	Parametric linkage analysis in R
2013-04-15	peplib	Peptide Library Analysis Methods
2013-04-15	pkgutils	pkgutils – Utilities for creating R packages
2013-04-15	R2Cuba	Multidimensional Numerical Integration
2013-04-15	rangeMapper	A platform for the study of macroecology of life history traits
2013-04-15	RcmdrPlugin.lfstat	Rcmdr Plug-In for low flow analysis
2013-04-15	SMCRM	Data Sets for Statistical Methods in Customer Relationship Management by Kumar and Petersen (2012)
2013-04-15	spMC	Continuous Lag Spatial Markov Chains
2013-04-15	vegdata	Functions to access vegetation databases (Turboveg) and prepare vegetation data for analysis
2013-04-15	wordcloud	Word Clouds
2013-04-14	animation	A gallery of animations in statistics and utilities to create animations
2013-04-14	clinsig	Clinical significance functions
2013-04-14	crank	Completing ranks
2013-04-14	gRapHD	Efficient selection of undirected graphical models for high-dimensional datasets
2013-04-14	openair	Tools for the analysis of air pollution data
2013-04-14	opmdata	Example data for analyzing OmniLog(R) Phenotype Microarray data
2013-04-14	prettyR	Pretty descriptive stats
2013-04-14	proxy	Distance and Similarity Measures
2013-04-14	svd	Interfaces to various state-of-art SVD and eigensolvers
2013-04-13	BB	Solving and Optimizing Large-Scale Nonlinear Systems
2013-04-13	DeducerSpatial	Deducer for spatial data analysis
2013-04-13	ellipse	Functions for drawing ellipses and ellipse-like confidence regions
2013-04-13	FBFsearch	Algorithm for searching the space of Gaussian directed acyclic graphical models through moment fractional Bayes factors
2013-04-13	FGN	Fractional Gaussian Noise and hyperbolic decay time series model fitting
2013-04-13	ggmap	A package for spatial visualization with Google Maps and OpenStreetMap
2013-04-13	mistral	Methods in Structural Reliability
2013-04-13	MultiLCIRT	Multidimensional latent class Item Response Theory models
2013-04-13	OpenStreetMap	Access to open street map raster images
2013-04-13	Rdpack	Update and manipulate Rd documentation objects
2013-04-13	RHmm	Hidden Markov Models simulations and estimations
2013-04-13	scidb	An R interface to SciDB
2013-04-13	speedRlibs	Package containing the required libraries (jars) for speedR
2013-04-13	tfplot	Time Frame User Utilities
2013-04-12	BayesFactor	Computation of Bayes factors for common designs
2013-04-12	bigrf	Big Random Forests: Classification and Regression Forests for Large Data Sets
2013-04-12	blockcluster	Co-Clustering package for Binary, Contingency and Continuous data-sets
2013-04-12	compositions	Compositional Data Analysis
2013-04-12	ctv	CRAN Task Views
2013-04-12	geiger	Analysis of evolutionary diversification
2013-04-12	glmulti	Model selection and multimodel inference made easy
2013-04-12	gProfileR	g:ProfileR
2013-04-12	logging	R logging package
2013-04-12	mkin	Routines for fitting kinetic models with one or more state variables to chemical degradation data
2013-04-12	orderbook	Orderbook visualization/Charting software
2013-04-12	SGP	An R Package for the Calculation and Visualization of Student Growth Percentiles & Percentile Growth Trajectories
2013-04-12	sideChannelAttack	Side Channel Attack
2013-04-12	sqlshare	API for access to SQLShare database
2013-04-12	stpp	Space-Time Point Pattern simulation, visualisation and analysis
2013-04-12	WARN	Weaning Age Reconstruction with Nitrogen isotope analysis
2013-04-11	ade4	Analysis of Ecological Data : Exploratory and Euclidean methods in Environmental sciences
2013-04-11	amen	Additive and multiplicative effects modeling of networks and relational data
2013-04-11	BayesLCA	Bayesian Latent Class Analysis
2013-04-11	BiodiversityR	GUI for biodiversity, suitability and community ecology analysis
2013-04-11	BMA	Bayesian Model Averaging
2013-04-11	cladoRcpp	C++ implementations of phylogenetic calculations
2013-04-11	colorspace	Color Space Manipulation
2013-04-11	Delaporte	Statistical functions for the Delaporte distribution
2013-04-11	extrafont	Tools for using fonts
2013-04-11	fastR	Data sets and utilities for Foundations and Applications of Statistics by R Pruim
2013-04-11	geomorph	Geometric morphometric analysis of 2d/3d landmark data
2013-04-11	gplm	Generalized partial linear models (GPLM)
2013-04-11	heplots	Visualizing Hypothesis Tests in Multivariate Linear Models
2013-04-11	knitr	A general-purpose package for dynamic report generation in R
2013-04-11	LDcorSV	LDcorSV
2013-04-11	metafor	Meta-Analysis Package for R
2013-04-11	MuMIn	Multi-model inference
2013-04-11	mvabund	statistical methods for analysing multivariate abundance data
2013-04-11	PCovR	Principal Covariates Regression
2013-04-11	qtl	Tools for analyzing QTL experiments
2013-04-11	RbioRXN	RbioRXN - process Rhea and MetaCyc (BioCyc, EcoCyc) biochemical reaction data
2013-04-11	Rttf2pt1	Package for ttf2pt1 program
2013-04-11	SGPdata	Exemplar data sets for SGP analyses
2013-04-11	SPOT	Sequential Parameter Optimization
2013-04-11	VIM	Visualization and Imputation of Missing Values
2013-04-10	ABCp2	Approximate Bayesian Computational model for estimating P2
2013-04-10	BatchExperiments	Statistical experiments on batch computing clusters
2013-04-10	BatchJobs	Batch computing with R
2013-04-10	clinUtiDNA	Clinical Utility of DNA Testing
2013-04-10	deseasonalize	Optimal deseasonalization for geophysical time series using AR fitting
2013-04-10	expectreg	Expectile and Quantile Regression
2013-04-10	fitdistrplus	Help to fit of a parametric distribution to non-censored or censored data
2013-04-10	hierfstat	Estimation and tests of hierarchical F-statistics
2013-04-10	igraph0	Network analysis and visualization, old, deprecated package
2013-04-10	insol	Solar Radiation
2013-04-10	LMERConvenienceFunctions	A suite of functions to back-fit fixed effects and forward-fit random effects, as well as other miscellaneous functions
2013-04-10	msme	Functions and Datasets for "Methods of Statistical Model Estimation"
2013-04-10	multilevel	Multilevel Functions
2013-04-10	plsRglm	Partial least squares Regression for generalized linear models
2013-04-10	R2OpenBUGS	Running OpenBUGS from R
2013-04-10	rmgarch	Multivariate GARCH models
2013-04-10	RSGHB	Functions for Hierarchical Bayesian Estimation: A Flexible Approach
2013-04-10	vimcom	Intermediate the communication between Vim and R
2013-04-09	adehabitatHS	Analysis of habitat selection by animals
2013-04-09	agricolae	Statistical Procedures for Agricultural Research
2013-04-09	DAMisc	Dave Armstrong's Miscellaneous Functions
2013-04-09	gmp	Multiple Precision Arithmetic
2013-04-09	highfrequency	highfrequency
2013-04-09	highlight	Syntax highlighter
2013-04-09	msarc	Draws diagrams (mis)representing the results of mass spec experiments
2013-04-09	parspatstat	Parallel spatial statistics
2013-04-09	phcfM	Modelling anthropogenic deforestation
2013-04-09	R1magic	Compressive Sampling: Sparse signal recovery utilities
2013-04-09	randomSurvivalForest	Random Survival Forests
2013-04-09	rbugs	Fusing R and OpenBugs and Beyond
2013-04-09	RSiteCatalyst	Adobe (Omniture) Reporting API
2013-04-09	SAVE	This package implements the SAVE approach for Computer Models
2013-04-09	scape	Statistical Catch-at-Age Plotting Environment
2013-04-09	scapeMCMC	MCMC Diagnostic Plots
2013-04-09	seewave	Time wave analysis and graphical representation
2013-04-09	sem	Structural Equation Models
2013-04-09	spd	Semi Parametric Distribution
2013-04-09	WebDevelopR	Website development package for R
2013-04-08	autopls	pls regression with backward selection of predictors
2013-04-08	citccmst	CIT Colon Cancer Molecular SubTypes Prediction
2013-04-08	df2json	Convert a dataframe to JSON
2013-04-08	EpiModel	Mathematical Modeling of Infectious Disease
2013-04-08	epiR	An R package for the analysis of epidemiological data
2013-04-08	ExactSampling	ExactSampling: risk evaluation using exact resampling methods for the k Nearest Neighbor algorithm
2013-04-08	GA	Genetic Algorithms
2013-04-08	gap	Genetic analysis package
2013-04-08	ibr	Iterative Bias Reduction
2013-04-08	koRpus	An R Package for Text Analysis
2013-04-08	LVQTools	Learning Vector Quantization Tools
2013-04-08	Nippon	Japanese utility functions and data
2013-04-08	peperr	Parallelised Estimation of Prediction Error
2013-04-08	ppstat	Point Process Statistics
2013-04-08	quadrupen	Sparsity by Worst-Case Quadratic Penalties
2013-04-08	refund	Regression with Functional Data
2013-04-08	roxyPackage	Utilities to automate package builds
2013-04-08	survIDINRI	IDI and NRI for comparing competing risk prediction models with censored survival data
2013-04-08	tdthap	TDT tests for extended haplotypes
2013-04-08	XiMpLe	A simple XML tree parser and generator
2013-04-07	bc3net	BC3NET
2013-04-07	difR	Collection of methods to detect dichotomous differential item functioning (DIF) in psychometrics
2013-04-07	logistiX	Exact logistic regression including Firth correction
2013-04-07	maxent	Low-memory Multinomial Logistic Regression with Support for Text Classification
2013-04-07	phyloclim	Integrating Phylogenetics and Climatic Niche Modeling
2013-04-07	popgen	Statistical and Population Genetics
2013-04-07	proftools	Profile Output Processing Tools for R
2013-04-07	R2WinBUGS	Running WinBUGS and OpenBUGS from R / S-PLUS
2013-04-07	rugarch	Univariate GARCH models
2013-04-07	SportsAnalytics	Infrastructure for Sports Analytics
2013-04-07	tclust	Robust Trimmed Clustering
2013-04-06	astro	Astronomy Functions, Tools and Routines
2013-04-06	DPw	Semiparametric Bayesian procedure for selecting a subset containing the weakest species with an acceptably high probability
2013-04-06	futile.logger	Futile logger subsystem
2013-04-06	network	Classes for Relational Data
2013-04-06	R2HTML	HTML exportation for R objects
2013-04-06	ResourceSelection	Resource Selection (Probability) Functions for Use-Availability Data
2013-04-06	SSN	Spatial Modeling on Stream Networks
2013-04-05	anacor	Simple and Canonical Correspondence Analysis
2013-04-05	concreg	Concordance regression
2013-04-05	DiceOptim	Kriging-based optimization for computer experiments
2013-04-05	EcoHydRology	A community modeling foundation for Eco-Hydrology
2013-04-05	fingerprint	Functions to operate on binary fingerprint data
2013-04-05	ftsa	Functional time series analysis
2013-04-05	gdata	Various R programming tools for data manipulation
2013-04-05	metabolomics	A collection of functions for analysing metabolomics data
2013-04-05	mutossGUI	A graphical user interface for the MuToss Project
2013-04-05	NanoStringNorm	Normalize NanoString miRNA and mRNA data
2013-04-05	persiandictionary	English to Persian dictionary
2013-04-05	PlotRegionHighlighter	Creates an envelope that surrounds a set of points plotted in a two dimensional space
2013-04-05	psbcGroup	Penalized semi-parametric Bayesian Cox (PSBC) models with shrinkage and grouping priors
2013-04-05	saws	Small-Sample Adjustments for Wald tests Using Sandwich Estimators
2013-04-05	smatr	(Standardised) Major Axis Estimation and Testing Routines
2013-04-05	SWATmodel	A multi-OS implementation of the TAMU SWAT model
2013-04-05	TDMR	Tuned Data Mining in R
2013-04-04	BaySIC	Bayesian Analysis of Significantly Mutated Genes in Cancer
2013-04-04	cem	Coarsened Exact Matching
2013-04-04	cocor	Comparing correlations
2013-04-04	cocron	Statistical comparisons of two or more alpha coefficients
2013-04-04	CommonJavaJars	Useful libraries for building a Java based GUI under R
2013-04-04	Formula	Extended Model Formulas
2013-04-04	functional	Curry, Compose, and other higher-order functions
2013-04-04	GeoLight	Analysis of light based geolocator data
2013-04-04	GOsummaries	Word cloud summaries of GO enrichment analysis
2013-04-04	ibd	INCOMPLETE BLOCK DESIGNS
2013-04-04	inflection	Finds the inflection point of a curve
2013-04-04	LARF	LARF: Local Average Response Functions for Estimating Treatment Effects
2013-04-04	mcga	Machine coded genetic algorithms for real-valued optimization problems
2013-04-04	MigClim	Implementing dispersal into species distribution models
2013-04-04	paleotree	Paleontological and Phylogenetic Analyses of Evolution
2013-04-04	PamGeneMixed	Preprocessing and Modeling Kinase Activity Profiles in PamChip Data
2013-04-04	phangorn	Phylogenetic analysis in R
2013-04-04	plotGoogleMaps	Plot SP or SPT(STDIF,STFDF) data as HTML map mashup over Google Maps
2013-04-04	postCP	A package to estimate posterior probabilities and perform model selection in change-point models using constrained HMM
2013-04-04	relsurv	Relative survival
2013-04-04	RSurvey	Analysis of Spatially Distributed Data
2013-04-04	sae	Small Area Estimation
2013-04-04	tgp	Bayesian treed Gaussian process models
2013-04-03	arfima	Fractional ARIMA Time Series Modeling
2013-04-03	boot	Bootstrap Functions (originally by Angelo Canty for S)
2013-04-03	catnet	Categorical Bayesian Network Inference
2013-04-03	class	Functions for Classification
2013-04-03	gplots	Various R programming tools for plotting data
2013-04-03	Kmisc	Miscellaneous functions intended to improve the R coding experience
2013-04-03	lambda.r	Functional programming in R
2013-04-03	lint	Tools to check R code style
2013-04-03	magma	Matrix Algebra on GPU and Multicore Architectures
2013-04-03	marmap	Import, plot and analyze bathymetric and topographic data
2013-04-03	MASS	Support Functions and Datasets for Venables and Ripley's MASS
2013-04-03	ncbit	retrieve and build NBCI taxonomic data
2013-04-03	nlme	Linear and Nonlinear Mixed Effects Models
2013-04-03	noweb	Noweb system for R
2013-04-03	readMzXmlData	Reads mass spectrometry data in mzXML format
2013-04-03	relevent	Relational Event Models
2013-04-03	RMark	R Code for MARK Analysis
2013-04-03	RSKC	Robust sparse K-means
2013-04-03	sdnet	Soft Discretization-based Bayesian Network Inference
2013-04-03	smoothHR	Smooth Hazard Ratio Curves taking a Reference Value
2013-04-03	softclassval	Soft classification performance measures
2013-04-03	softImpute	matrix completion via iterative soft-thresholded svd
2013-04-03	spatial	Functions for Kriging and Point Pattern Analysis
2013-04-03	specificity	Specificity of personality trait-outcome associations
2013-04-03	TimeWarp	Date calculations and manipulation
2013-04-03	trioGxE	A data smoothing approach to explore and test gene-environment interaction in case-parent trio data
2013-04-02	abd	The Analysis of Biological Data
2013-04-02	ape	Analyses of Phylogenetics and Evolution
2013-04-02	bPeaks	bPeaks: a simple and intuitive approach for detection of basic peaks (bPeaks) from ChIP-seq data
2013-04-02	ChemoSpec	Exploratory Chemometrics for Spectroscopy
2013-04-02	ConvCalendar	Converts dates between calendars
2013-04-02	ENmisc	Neuwirth miscellaneous
2013-04-02	gtools	Various R programming tools
2013-04-02	HiveR	2D and 3D Hive Plots for R
2013-04-02	infutil	Information Utility
2013-04-02	laeken	Estimation of indicators on social exclusion and poverty
2013-04-02	MLEcens	Computation of the MLE for bivariate (interval) censored data
2013-04-02	normalp	Package for exponential power distributions (EPD)
2013-04-02	processdata	Process Data
2013-04-02	RAppArmor	RAppArmor
2013-04-02	R.devices	Enhanced methods for handling graphical devices
2013-04-02	rpanel	Simple interactive controls for R using the tcltk library
2013-04-02	SAM	Sparse Additive Modelling
2013-04-02	SGL	Fit a GLM (or cox model) with a combination of lasso and group lasso regularization
2013-04-02	shrink	Global, Parameterwise, and Joint Shrinkage of Regression Coefficients
2013-04-02	SPIn	Simulation-efficient Shortest Probability Intervals
2013-04-02	SSsimple	State space models
2013-04-02	WGCNA	Weighted Correlation Network Analysis
2013-04-01	BaSTA	A package for estimating age-specific survival from incomplete capture-recapture/recovery data
2013-04-01	biganalytics	A library of utilities for big.matrix objects of package bigmemory
2013-04-01	bigmemory	Manage massive matrices with shared memory and memory-mapped files
2013-04-01	bigtabulate	table-, tapply-, and split-like functionality for matrix and big.matrix objects
2013-04-01	flare	Family of Lasso Regression
2013-04-01	geoPlot	Geocodes street or ip addresses and plots them on a map
2013-04-01	gpclib	General Polygon Clipping Library for R
2013-04-01	optAUC	Optimal Combinations of Diagnostic Tests Based on AUC
2013-04-01	rrcovHD	Robust multivariate Methods for High Dimensional Data
2013-04-01	SNPtools	Accessing, subsetting and plotting mouse SNPs
2013-03-31	fbRanks	Association Football (Soccer) Ranking via Poisson Regression
2013-03-31	fuzzyRankTests	Fuzzy Rank Tests and Confidence Intervals
2013-03-31	gIPFrm	Generalized Iterative Proportional Fitting for Relational Models
2013-03-31	mcmc	Markov Chain Monte Carlo
2013-03-31	nice	Get or Set UNIX Niceness
2013-03-31	Rquake	Seismic Hypocenter Determination
2013-03-31	speedRlibTF	speedR's table filter library
2013-03-31	ump	Uniformly Most Powerful Tests
2013-03-30	GEOmap	Topographic and Geologic Mapping
2013-03-30	GrapheR	A multi-platform GUI for drawing customizable graphs in R
2013-03-30	longCatEDA	Package for Plotting Categorical Longitudinal and Time-Series Data
2013-03-30	pbatR	P2BAT
2013-03-30	RgoogleMaps	Overlays on Google map tiles in R
2013-03-30	sidier	SIDIER: Substitution and Indel Distances to Infer Evolutionary Relationships
2013-03-30	thgenetics	Genetic Rare Variants Tests
2013-03-30	tmvtnorm	Truncated Multivariate Normal and Student t Distribution
2013-03-30	trust	Trust Region Optimization
2013-03-30	TSHRC	Two Stage Hazard Rate Comparison
2013-03-29	biOps	Image processing and analysis
2013-03-29	biOpsGUI	GUI for Basic image operations
2013-03-29	COBRA	Nonlinear Aggregation of Predictors
2013-03-29	experiment	experiment: R package for designing and analyzing randomized experiments
2013-03-29	FuncMap	Hive Plots of R Package Function Calls
2013-03-29	HH	Statistical Analysis and Data Display: Heiberger and Holland
2013-03-29	iBUGS	An Interface to WinBUGS/OpenBUGS/JAGS by gWidgets
2013-03-29	LS2W	Locally stationary two-dimensional wavelet process estimation scheme
2013-03-29	muscle	Multiple Sequence Alignment
2013-03-29	pooh	Partial Orders and Relations
2013-03-29	Ritc	Isothermal Titration Calorimetry (ITC) Data Analysis
2013-03-29	sampSurf	Sampling Surface Simulation for Areal Sampling Methods
2013-03-29	sandwich	Robust Covariance Matrix Estimators
2013-03-29	Skillings.Mack	The Skillings-Mack test Statistic for block designs with missing observations
2013-03-28	bdsmatrix	Routines for Block Diagonal Symmetric matrices
2013-03-28	CHNOSZ	Chemical Thermodynamics and Activity Diagrams
2013-03-28	cwm	Cluster Weighted Models by EM algorithm
2013-03-28	diveMove	Dive analysis and calibration
2013-03-28	EcoTroph	EcoTroph modelling support
2013-03-28	eeptools	Convenience functions for education data
2013-03-28	HPOSim	Analysis similarities between HPO terms and phenotypic similarity between genes and between diseases
2013-03-28	ICE	Iterated Conditional Expectation
2013-03-28	pgirmess	Data analysis in ecology
2013-03-28	RJSONIO	Serialize R objects to JSON, JavaScript Object Notation
2013-03-28	robustX	eXperimental Functionality for Robust Statistics
2013-03-28	rphast	R interface to PHAST software for comparative genomics
2013-03-28	shapes	Statistical shape analysis
2013-03-28	sprsmdl	Sparse modeling toolkit
2013-03-28	TScompare	TSdbi Comparison
2013-03-28	TSdbi	TSdbi (Time Series Database Interface)
2013-03-28	XML	Tools for parsing and generating XML within R and S-Plus
2013-03-27	bfast	Breaks For Additive Season and Trend (BFAST)
2013-03-27	demi	Differential Expression from Multiple Indicators
2013-03-27	farsi	Translate integers into persian
2013-03-27	klaR	Classification and visualization
2013-03-27	meteogRam	Tools for plotting meteograms
2013-03-27	psd	Adaptive, sine-multitaper power spectral density estimation
2013-03-27	rplos	Interface to PLoS Journals search and altmetrics API's
2013-03-27	RPostgreSQL	R interface to the PostgreSQL database system
2013-03-27	R.utils	Various programming utilities
2013-03-27	severity	Mayo's Post-data Severity Evaluation
2013-03-27	survival	Survival Analysis
2013-03-27	testthat	Testthat code. Tools to make testing fun :)
2013-03-26	A3	A3: Accurate, Adaptable, and Accessible Error Metrics for Predictive Models
2013-03-26	Bayesthresh	Bayesian thresholds mixed-effects models for categorical data
2013-03-26	bcrm	Bayesian continuous reassessment method (CRM) designs for Phase I dose-finding trials
2013-03-26	bride	Brier score decomposition of probabilistic forecasts for binary events
2013-03-26	cluster	Cluster Analysis Extended Rousseeuw et al
2013-03-26	dlm	Bayesian and Likelihood Analysis of Dynamic Linear Models
2013-03-26	EasyUpliftTree	Easy Uplift Tree Model
2013-03-26	exsic	Convenience functions for botanist to create exsiccatae indices
2013-03-26	gamlr	Gamma Lasso Regression
2013-03-26	HI	Simulation from distributions supported by nested hyperplanes
2013-03-26	LiblineaR	Linear Predictive Models Based On The Liblinear C/C++ Library
2013-03-26	Matrix	Sparse and Dense Matrix Classes and Methods
2013-03-26	Rmpi	Interface (Wrapper) to MPI (Message-Passing Interface)
2013-03-26	rPython	Package allowing R to call Python
2013-03-26	spatialkernel	Nonparameteric estimation of spatial segregation in a multivariate point process
2013-03-26	TTAinterfaceTrendAnalysis	Temporal Trend Analysis Graphical Interface
2013-03-25	aCRM	Convenience functions for analytical Customer Relationship Management
2013-03-25	dti	Analysis of diffusion weighted imaging (DWI) data
2013-03-25	entropy	Entropy and Mutual Information Estimation
2013-03-25	gaoptim	Genetic Algorithm optimization for real-based and permutation-based problems
2013-03-25	ggthemes	Extra themes, scales and geoms for ggplot
2013-03-25	HAP.ROR	Recursive Organizer (ROR)
2013-03-25	hashFunction	A collection of non-cryptographic hash functions
2013-03-25	ks	Kernel smoothing
2013-03-25	lattice	Lattice Graphics
2013-03-25	mapproj	Map Projections
2013-03-25	MESS	Miscellaneous esoteric statistical scripts
2013-03-25	pbdBASE	Programming with Big Data – Base Wrappers for Distributed Matrices
2013-03-25	pbdDEMO	Programming with Big Data – Demonstrations of pbd Packages
2013-03-25	pbdDMAT	Programming with Big Data – Distributed Matrix Methods
2013-03-25	pec	Prediction Error Curves for Survival Models
2013-03-25	phonR	R tools for phoneticians and phonologists
2013-03-25	PMA	Penalized Multivariate Analysis
2013-03-25	pmclust	Parallel Model-Based Clustering
2013-03-25	pracma	Practical Numerical Math Functions
2013-03-25	QCA	Qualitative Comparative Analysis
2013-03-25	SeleMix	Selective Editing via Mixture models
2013-03-25	snow	Simple Network of Workstations
2013-03-24	bagRboostR	Ensemble bagging and boosting classifiers
2013-03-24	cccd	Class Cover Catch Digraphs
2013-03-24	ChangeAnomalyDetection	Change Anomaly Detection
2013-03-24	DoE.wrapper	Wrapper package for design of experiments functionality
2013-03-24	EasyHTMLReport	Easy to send HTML reports
2013-03-24	EMCluster	EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution
2013-03-24	IBHM	Approximation using the IBHM method
2013-03-24	mcIRT	IRT models for multiple choice items (mcIRT)
2013-03-24	orsk	Converting Odds Ratio to Relative Risk in Cohort Studies with Partial Data Information
2013-03-24	pbdMPI	Programming with Big Data – Interface to MPI
2013-03-24	rHadoopClient	hadoop client interface for R
2013-03-23	CondReg	Condition Number Regularized Covariance Estimation
2013-03-23	crimCV	Group-Based Modelling of Longitudinal Data
2013-03-23	flsa	Path algorithm for the general Fused Lasso Signal Approximator
2013-03-23	hcc	Hidden correlation check
2013-03-23	lpSolve	Interface to Lp_solve v. 5.5 to solve linear/integer programs
2013-03-23	RCassandra	R/Cassandra interface
2013-03-23	RcmdrPlugin.MA	Graphical User Interface for Conducting Meta-Analyses in R
2013-03-23	Rcpp	Seamless R and C++ Integration
2013-03-23	RSclient	Client for Rserve
2013-03-23	Rserve	Binary R server
2013-03-23	SemiPar	Semiparametic Regression
2013-03-22	adehabitatLT	Analysis of animal movements
2013-03-22	DMwR	Functions and data for "Data Mining with R"
2013-03-22	FluOMatic	Estimation of background-subtracted fluorescence data
2013-03-22	heavy	Package for outliers accommodation using heavy-tailed distributions
2013-03-22	hwde	Models and tests for departure from Hardy-Weinberg equilibrium and independence between loci
2013-03-22	kohonen	Supervised and unsupervised self-organising maps
2013-03-22	margie	Log Marginal Likelihood of Gaussian Mixture
2013-03-22	mixtools	Tools for analyzing finite mixture models
2013-03-22	orientlib	Support for orientation data
2013-03-22	partykit	A Toolkit for Recursive Partytioning
2013-03-22	pcalg	Estimation of CPDAG/PAG and causal inference using the IDA algorithm
2013-03-22	pcaPP	Robust PCA by Projection Pursuit
2013-03-22	rockchalk	Regression Estimation and Presentation
2013-03-22	ROptRegTS	Optimally robust estimation for regression-type models
2013-03-22	SPARQL	SPARQL client
2013-03-22	SuppDists	Supplementary distributions
2013-03-22	vows	Voxelwise semiparametrics
2013-03-21	ACD	Categorical data analisys with complete or missing responses
2013-03-21	cheddar	Analysis and visualisation of ecological communities
2013-03-21	frbs	Fuzzy Rule-based Systems for Classification and Regression Tasks
2013-03-21	IBDhaploRtools	Functions for the Analysis of IBD Haplo output
2013-03-21	MASSTIMATE	Body Mass Estimation Equations for Vertebrates
2013-03-21	mco	Multi criteria optimization algorithms and related functions
2013-03-21	miRtest	combined miRNA- and mRNA-testing
2013-03-21	MSeasyTkGUI	MSeasy Tcl/Tk Graphical User Interface
2013-03-21	pca3d	Three dimensional PCA plots
2013-03-21	PSM	Non-Linear Mixed-Effects modelling using Stochastic Differential Equations
2013-03-21	RNCEP	Obtain, organize, and visualize NCEP weather data
2013-03-21	sensR	Thurstonian models for sensory discrimination
2013-03-21	StatDA	Statistical Analysis for Environmental Data
2013-03-20	BoolNet	Generation, reconstruction, simulation and analysis of synchronous, asynchronous, and probabilistic Boolean networks
2013-03-20	cec2005benchmark	Benchmark for the CEC 2005 Special Session on Real-Parameter Optimization
2013-03-20	DataFrameConstr	Constrained data frames and homogenous list classes
2013-03-20	DATforDCEMRI	Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI
2013-03-20	KernSmooth	Functions for kernel smoothing for Wand & Jones (1995)
2013-03-20	kobe	Tools for providing advice for the Tuna Regional Fisheries Management Organisations
2013-03-20	memisc	Tools for Management of Survey Data, Graphics, Programming, Statistics, and Simulation
2013-03-20	MSeasy	Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data
2013-03-20	MultiPhen	MultiPhen, a package for the genetic association testing of multiple phenotypes
2013-03-20	nnet	Feed-forward Neural Networks and Multinomial Log-Linear Models
2013-03-20	OjaNP	Multivariate Methods Based on the Oja Median and Related Concepts
2013-03-20	rCarto	This package builds maps with a full cartographic layout
2013-03-20	Rgnuplot	Rgnuplot, R interface for gnuplot
2013-03-20	rpart	Recursive Partitioning
2013-03-20	schoRsch	Tools for analyzing factorial experiments
2013-03-20	usdm	Uncertainty analysis for species distribution models
2013-03-20	VDA	VDA
2013-03-19	AnalyzeFMRI	Functions for analysis of fMRI datasets stored in the ANALYZE or NIFTI format
2013-03-19	asbio	A collection of statistical tools for biologists
2013-03-19	BiplotGUI	Interactive Biplots in R
2013-03-19	BOG	Bacterium and virus analysis of Orthologous Groups (BOG) is a package for identifying differentially regulated genes in the light of gene functions
2013-03-19	clue	Cluster ensembles
2013-03-19	clusthaplo	Clusthaplo
2013-03-19	colorfulVennPlot	Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data
2013-03-19	DeducerExtras	Additional dialogs and functions for Deducer
2013-03-19	doBy	doBy - Groupwise summary statistics, general linear contrasts, population means (least-squares-means), and other utilities
2013-03-19	plsdof	Degrees of Freedom and Statistical Inference for Partial Least Squares Regression
2013-03-19	QCAGUI	QCA Graphical User Interface
2013-03-19	R2BayesX	Estimate Structured Additive Regression Models with BayesX
2013-03-19	rattle	Graphical user interface for data mining in R
2013-03-19	relations	Data Structures and Algorithms for Relations
2013-03-19	rminer	Simpler use of data mining methods (e.g. NN and SVM) in classification and regression
2013-03-19	RWekajars	R/Weka interface jars
2013-03-19	sets	Sets, Generalized Sets, Customizable Sets and Intervals
2013-03-19	Snowball	Snowball Stemmers
2013-03-19	tm.plugin.mail	Text Mining E-Mail Plug-In
2013-03-19	tpe	Tree preserving embedding
2013-03-19	vegan	Community Ecology Package
2013-03-18	aws	Adaptive Weights Smoothing
2013-03-18	awsMethods	Class and Methods definitions for packages aws, adimpro, fmri, dwi
2013-03-18	crossdes	Construction of Crossover Designs
2013-03-18	cvplogistic	Penalized Logistic Regression Model using Majorization Minimization by Coordinate Descent (MMCD) Algorithm
2013-03-18	fCopulae	Rmetrics - Dependence Structures with Copulas
2013-03-18	LDExplorer	Efficient Whole-Genome LD Based Haplotpe Block Recognition
2013-03-18	marqLevAlg	An algorithm for least-squares curve fitting
2013-03-18	MiST	Mixed effects Score Test for continuous outcomes
2013-03-18	MixtureInf	Inference for Finite Mixture Models
2013-03-18	OutlierDC	Outlier Detection using Quantile Regression for Censored Data
2013-03-18	rgr	The GSC Applied Geochemistry EDA Package
2013-03-18	sgr	Sample Generation by Replacement
2013-03-18	SmarterPoland	A set of tools developed by the Foundation SmarterPoland.pl
2013-03-18	svMisc	SciViews GUI API - Miscellaneous functions
2013-03-18	TimeMachine	Time Machine
2013-03-18	XLConnect	Excel Connector for R
2013-03-17	bipartite	Visualising bipartite networks and calculating some (ecological) indices
2013-03-17	ChainLadder	Statistical methods for the calculation of outstanding claims reserves in general insurance
2013-03-17	DTComPair	Comparison of Binary Diagnostic Tests in a Paired Study Design
2013-03-17	ensembleMOS	Ensemble Model Output Statistics
2013-03-17	fanc	Penalized likelihood factor analysis via nonconvex penalty
2013-03-17	GeneticTools	Collection of Genetic Data Analysis Tools
2013-03-17	gMWT	Generalized Mann-Whitney Type Tests
2013-03-17	gsDesign	Group Sequential Design
2013-03-17	simsem	SIMulated Structural Equation Modeling
2013-03-17	TTR	Technical Trading Rules
2013-03-16	Ecdat	Data sets for econometrics
2013-03-16	FitAR	Subset AR Model Fitting
2013-03-16	HapEstXXR	HapEstXXR
2013-03-16	MTurkR	Access to Amazon Mechanical Turk Requester API via R
2013-03-16	ncvreg	Regularization paths for SCAD- and MCP-penalized regression models
2013-03-16	popgraph	This is an R package that constructs and manipulates population graphs
2013-03-16	tree	Classification and regression trees
2013-03-15	brnn	brnn (Bayesian regularization for feed-forward neural networks)
2013-03-15	earlywarnings	Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries
2013-03-15	fImport	Rmetrics - Economic and Financial Data Import
2013-03-15	GWAtoolbox	GWAS Quality Control
2013-03-15	metRology	Support for metrological applications
2013-03-15	nordklimdata1	Dataset for climate analysis with data from the Nordic region
2013-03-15	ProfessR	Grades Setting and Exam Maker
2013-03-15	r4ss	R code for Stock Synthesis
2013-03-15	rcdk	rcdk - Interface to the CDK Libraries
2013-03-15	rcdklibs	rcdklib - CDK libraries packaged for R
2013-03-15	Rcmdr	R Commander
2013-03-15	Rwave	Time-Frequency analysis of 1-D signals
2013-03-15	synbreed	Framework for the analysis of genomic prediction data using R
2013-03-15	TraMineRextras	Extras for use with the TraMineR package
2013-03-15	vcf2geno	Efficiently Read Variant Call Format (VCF) into R
2013-03-14	BayesX	R Utilities Accompanying the Software Package BayesX
2013-03-14	biomod2	Ensemble platform for species distribution modeling
2013-03-14	BlockMessage	Creates strings that show a text message in 8 by 8 block letters
2013-03-14	CUMP	Analyze Multivariate Phenotypes by Combining Univariate results
2013-03-14	DAAG	Data Analysis And Graphics data and functions
2013-03-14	dismo	Species distribution modeling
2013-03-14	EVER	Estimation of Variance by Efficient Replication
2013-03-14	fpp	Data for "Forecasting: principles and practice"
2013-03-14	GriegSmith	Uses Grieg-Smith method on 2 dimentional spatial data
2013-03-14	hsicCCA	Canonical Correlation Analysis based on Kernel Independence Measures
2013-03-14	IsoGene	Testing for monotonic relationship between gene expression and doses in a microarray experiment
2013-03-14	lcmm	Estimation of latent class mixed models, joint latent class mixed models and mixed models for curvilinear outcomes
2013-03-14	np	Nonparametric kernel smoothing methods for mixed data types
2013-03-14	NPCirc	Nonparametric Circular Methods
2013-03-14	npRmpi	Parallel nonparametric kernel smoothing methods for mixed data types
2013-03-14	odprism	Optimal design and performance of random intercept and slope models
2013-03-14	PResiduals	Probability scale residuals and residual correlations
2013-03-14	randomLCA	Random Effects Latent Class Analysis
2013-03-14	rgexf	An R package to build GEXF graph files
2013-03-14	Rramas	Matrix population models
2013-03-14	scrime	Analysis of High-Dimensional Categorical Data such as SNP Data
2013-03-14	tgram	Functions to compute and plot tracheidograms
2013-03-14	tripEstimation	Metropolis sampler and supporting functions for estimating animal movement from archival tags and satellite fixes
2013-03-14	WriteXLS	Cross-platform Perl based R function to create Excel 2003 (XLS) files
2013-03-13	adehabitatMA	Tools to Deal with Raster Maps
2013-03-13	agrmt	Calculate agreement
2013-03-13	bams	Breakpoint annotation model smoothing
2013-03-13	BayHap	Bayesian analysis of haplotype association using Markov Chain Monte Carlo
2013-03-13	CopulaRegression	Bivariate Copula Based Regression Models
2013-03-13	cvq2	Calculate the predictive squared correlation coefficient
2013-03-13	dixon	Nearest Neighbour Contingency Table Analysis
2013-03-13	ecespa	Functions for spatial point pattern analysis
2013-03-13	isa2	The Iterative Signature Algorithm
2013-03-13	kknn	Weighted k-Nearest Neighbors
2013-03-13	maps	Draw Geographical Maps
2013-03-13	miscTools	Miscellaneous Tools and Utilities
2013-03-13	mpmcorrelogram	Multivariate Partial Mantel Correlogram
2013-03-13	NHPoisson	Modelling and validation of non homogeneous Poisson processes
2013-03-13	perry	Resampling-based prediction error estimation for regression models
2013-03-13	RcmdrPlugin.EZR	R Commander Plug-in for the EZR (Easy R) Package
2013-03-13	rpf	Response Probability Functions
2013-03-13	smdata	Data to accompany Smithson & Merkle, 2014
2013-03-13	svapls	Surrogate variable analysis using partial least squares in a gene expression study
2013-03-13	swamp	Visualization, analysis and adjustment of high-dimensional data in respect to sample annotations
2013-03-13	zoeppritz	Zoeppritz Equations
2013-03-12	BcDiag	Diagnostics plots for Bicluster Data
2013-03-12	ber	Batch Effects Removal
2013-03-12	DatABEL	file-based access to large matrices stored on HDD in binary format
2013-03-12	doRNG	Generic Reproducible Parallel Backend for foreach Loops
2013-03-12	EDR	Estimation of the effective dimension reduction (EDR) space
2013-03-12	ff	memory-efficient storage of large data on disk and fast access functions
2013-03-12	gptk	Gaussian Processes Tool-Kit
2013-03-12	GUIDE	GUI for DErivatives in R
2013-03-12	kappaSize	Sample Size Estimation Functions for Studies of Interobserver Agreement
2013-03-12	kelvin	Calculate solutions to Kelvin differential equation using Bessel functions
2013-03-12	kitagawa	Model the spectral response of a closed water-well to harmonic strains at seismic frequencies
2013-03-12	pbdSLAP	Programming with Big Data – Scalable Linear Algebra Packages
2013-03-12	penDvine	Flexible Pair-Copula Estimation in D-vines using Bivariate Penalized Splines
2013-03-12	prevR	Estimating regional trends of a prevalence from a DHS
2013-03-12	qtlmt	Tools for mapping multiple complex traits
2013-03-12	reports	An R package to assist in the workflow of writing academic articles and other reports
2013-03-12	rJava	Low-level R to Java interface
2013-03-12	rngtools	Utility functions for working with Random Number Generators
2013-03-12	Rssa	A collection of methods for singular spectrum analysis
2013-03-12	survPresmooth	Presmoothed Estimation in Survival Analysis
2013-03-11	bit	A class for vectors of 1-bit booleans
2013-03-11	cosso	Fit Regularized Nonparametric Regression Models Using COSSO Penalty
2013-03-11	datautils	Support functions for packages VBmix, semisupKernelPCA, and patchPlot
2013-03-11	FuzzyStatProb	Fuzzy stationary probabilities from a sequence of observations of an unknown Markov chain
2013-03-11	kequate	The kernel method of test equating
2013-03-11	MapGAM	Mapping Smoothed Odds Ratios from Individual-Level Data
2013-03-11	patchPlot	Scatterplots of image patches
2013-03-11	RepeatedHighDim	Detection of global group effect in microarrays data
2013-03-11	R.oo	R object-oriented programming with or without references
2013-03-11	semisupKernelPCA	Kernel PCA projection, and semi-supervised variant
2013-03-11	tcltk2	Tcl/Tk Additions
2013-03-11	VBmix	Variational Bayesian mixture models
2013-03-10	biclust	BiCluster Algorithms
2013-03-10	Sleuth3	Data sets from Ramsey and Schafer's "Statistical Sleuth (3rd ed)"
2013-03-10	VisuClust	VisuClust
2013-03-09	melody	Statistical Methods for the Quantitative Analysis of Song Spectrograms
2013-03-09	mixture	Mixture Models for Clustering and Classification
2013-03-09	OmicKriging	OmicKriging for Phenotypic Prediction
2013-03-08	BBMM	Brownian bridge movement model
2013-03-08	EpiEstim	EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves
2013-03-08	nls2	Non-linear regression with brute force
2013-03-08	rawFasta	Memory efficient handling of FASTA sequence files, a pure R implementation
2013-03-08	RMongo	MongoDB Client for R
2013-03-08	seacarb	seawater carbonate chemistry with R
2013-03-08	SmoothHazard	Fitting illness-death model for interval-censored data
2013-03-07	abn	Data Modelling with Additive Bayesian Networks
2013-03-07	anoint	Analysis of interactions
2013-03-07	dse	Dynamic Systems Estimation (time series package)
2013-03-07	easystab	Clustering Perturbation Stability Analysis
2013-03-07	emdbook	Ecological models and data (book support)
2013-03-07	GESTr	Gene Expression State Transformation
2013-03-07	intervals	Tools for working with points and intervals
2013-03-07	lazyData	A LazyData Facility
2013-03-07	LDOD	Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models
2013-03-07	mada	Meta-Analysis of Diagnostic Accuracy (mada)
2013-03-07	pxR	PC-Axis with R
2013-03-07	RAMpath	RAMpath
2013-03-07	ReliabilityTheory	Tools for structural reliability analysis
2013-03-07	TripleR	Social Relation Model (SRM) analyses for single or multiple round-robin groups
2013-03-06	bootfs	Use multiple feature selection algorithms to derive robust feature sets for two class classification problems
2013-03-06	data.table	Extension of data.frame for fast indexing, fast ordered joins, fast assignment, fast grouping and list columns
2013-03-06	disclapmix	Discrete Laplace mixture inference using the EM algorithm
2013-03-06	fishmove	Prediction of Fish Movement Parameters
2013-03-06	IM	Orthogonal Moment Analysis
2013-03-06	inlinedocs	Convert inline comments to documentation
2013-03-06	KernSmoothIRT	Nonparametric Item Response Theory
2013-03-06	mixOmics	Omics Data Integration Project
2013-03-06	neuroblastoma	Neuroblastoma
2013-03-06	RCurl	General network (HTTP/FTP/...) client interface for R
2013-03-06	rdd	Regression Discontinuity Estimation
2013-03-06	RTextTools	Automatic Text Classification via Supervised Learning
2013-03-06	statnet.common	Common R Scripts and Utilities Used by the Statnet Project Software
2013-03-06	stream	Infrastructure for Data Stream Mining
2013-03-06	TDD	Time-Domain Deconvolution of Seismometer Response
2013-03-06	vegclust	Fuzzy clustering of vegetation data
2013-03-06	waterData	An R Package for Retrieval, Analysis, and Anomaly Calculation of Daily Hydrologic Time Series Data
2013-03-05	bnlearn	Bayesian network structure learning, parameter learning and inference
2013-03-05	cec2013	Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013
2013-03-05	corrplot	Visualization of a correlation matrix
2013-03-05	msap	Statistical analysis for Methylation-sensitive Amplification Polymorphism data
2013-03-05	R2MLwiN	Running MLwiN from within R
2013-03-05	vcdExtra	vcd extensions and additions
2013-03-05	yaml	Methods to convert R data to YAML and back
2013-03-04	BiDimRegression	Calculates the bidimensional regression between two 2D configurations
2013-03-04	bifactorial	Inferences for bi- and trifactorial trial designs
2013-03-04	getopt	C-like getopt behavior
2013-03-04	LaplacesDemon	Complete Environment for Bayesian Inference
2013-03-04	lawstat	An R package for biostatistics, public policy, and law
2013-03-04	MAR1	Multivariate Autoregressive Modeling for Analysis of Community Time-Series Data
2013-03-04	nets	Network Estimation for Time Series
2013-03-04	optBiomarker	Estimation of optimal number of biomarkers for two-group microarray based classifications at a given error tolerance level for various classification rules
2013-03-04	random.polychor.pa	A Parallel Analysis With Polychoric Correlation Matrices
2013-03-04	SpatialExtremes	Modelling Spatial Extremes
2013-03-04	StandardizeText	Standardize Text
2013-03-04	survexp.fr	Relative survival, AER and SMR based on French death rates
2013-03-03	eHOF	Extended and enhanced Hierarchical Logistic Regression models (so called Huisman-Olff-Fresco models)
2013-03-03	oro.nifti	Rigorous - NIfTI+ANALYZE+AFNI Input / Output
2013-03-03	PropScrRand	Propensity score methods for assigning treatment in randomized trials
2013-03-03	reldist	Relative Distribution Methods
2013-03-03	ringbuffer	Ring buffer (circular buffer) data structure
2013-03-03	utility	Construct, Evaluate and Plot Value and Utility Functions
2013-03-03	YplantQMC	Plant architectural analysis with Yplant and QuasiMC
2013-03-02	ggplot2	An implementation of the Grammar of Graphics
2013-03-02	glmnet	Lasso and elastic-net regularized generalized linear models
2013-03-02	sna	Tools for Social Network Analysis
2013-03-01	akima	Interpolation of irregularly spaced data
2013-03-01	AtmRay	Acoustic Traveltime Calculations for 1-D Atmospheric Models
2013-03-01	deducorrect	deducorrect: Deductive correction, deductive imputation, and deterministic correction
2013-03-01	editrules	R package for parsing, applying, and manipulating data cleaning rules
2013-03-01	ExceedanceTools	Confidence Regions for Exceedance Sets
2013-03-01	glmperm	Inference in Generalized Linear Models
2013-03-01	mapdata	Extra Map Databases
2013-03-01	minpack.lm	R interface to the Levenberg-Marquardt nonlinear least-squares algorithm found in MINPACK, plus support for bounds
2013-03-01	perARMA	Package for Periodic Time Series Analysis
2013-03-01	rCMA	CMA-ES R-to-Java interface
2013-03-01	rgbif	Interface to the Global Biodiversity Information Facility API methods
2013-03-01	ropensnp	Interface to OpenSNP API methods
2013-03-01	ROSE	ROSE: Random Over-Sampling Examples
2013-03-01	saemix	Stochastic Approximation Expectation Maximization (SAEM) algorithm
2013-03-01	sgeostat	An Object-oriented Framework for Geostatistical Modeling in S+
2013-03-01	topologyGSA	topologyGSA
2013-03-01	trio	Testing of SNPs and SNP Interactions in Case-Parent Trio Studies
2013-03-01	VecStatGraphs3D	Vector analysis using graphical and analytical methods in 3D
2013-03-01	WeightedCluster	Clustering of Weighted Data
2013-02-28	BCA	Business and Customer Analytics
2013-02-28	bReeze	Functions for wind resource assessment
2013-02-28	dfcrm	Dose-finding by the continual reassessment method
2013-02-28	FSelector	Selecting attributes
2013-02-28	heatex	Heat exchange calculations during physical activity
2013-02-28	het.test	White's Test for Heteroskedasticity
2013-02-28	JOP	Joint Optimization Plot
2013-02-28	MiClip	A Model-based Approach to Identify Binding Sites in CLIP-Seq Data
2013-02-28	MOJOV	Mojo Variants: Rare Variants analysis
2013-02-28	norm	Analysis of multivariate normal datasets with missing values
2013-02-28	RcmdrPlugin.BCA	Rcmdr Plug-In for Business and Customer Analytics
2013-02-28	WMTregions	Exact Calculation of WMTR
2013-02-27	classify	Classification Accuracy and Consistency under IRT models
2013-02-27	HDMD	Statistical Analysis Tools for High Dimension Molecular Data (HDMD)
2013-02-27	lfstat	Calculates Low Flow Statistics for daily stream flow data
2013-02-27	mpoly	Symbolic computation and more with multivariate polynomials
2013-02-27	Rcgmin	Conjugate gradient minimization of nonlinear functions with box constraints
2013-02-27	robCompositions	Robust Estimation for Compositional Data
2013-02-27	rtiff	A tiff reader for R
2013-02-27	RXMCDA	RXMCDA
2013-02-26	estout	Estimates Output
2013-02-26	fso	Fuzzy Set Ordination
2013-02-26	mugnet	Mixture of Gaussian Bayesian Network Model
2013-02-26	nadiv	Functions to construct non-additive genetic relatedness matrices
2013-02-26	orclus	ORCLUS subspace clustering
2013-02-26	psych	Procedures for Psychological, Psychometric, and Personality Research
2013-02-26	questionr	Functions to make surveys processing easier
2013-02-26	RLRsim	Exact (Restricted) Likelihood Ratio tests for mixed and additive models
2013-02-26	SemiParSampleSel	Semiparametric Sample Selection Modelling with Continuous Response
2013-02-26	simboot	Simultaneous inference for diversity indices
2013-02-26	SkewHyperbolic	The Skew Hyperbolic Student t-Distribution
2013-02-25	cubature	Adaptive multivariate integration over hypercubes
2013-02-25	dataone	DataONE R Client
2013-02-25	dataonelibs	DataONE R Client Libraries
2013-02-25	EBMAforecast	Ensemble BMA Forecasting
2013-02-25	fdasrvf	Elastic Functional Data Analysis
2013-02-25	intcox	Iterated Convex Minorant Algorithm for interval censored event data
2013-02-25	iWeigReg	Improved methods for causal inference and missing data problems
2013-02-25	phtt	Panel Data Analysis with Heterogeneous Time Trends
2013-02-25	queueing	Analysis of Queueing Networks and Models
2013-02-25	RClimMAWGEN	RClimMAWGEN (R Climate Index Multi-site Auto-regressive Weather GENeretor): a package to generate time series of climate indices from RMAWGEN generations
2013-02-25	ror	Robust Ordinal Regression MCDA library
2013-02-25	RVAideMemoire	Diverse basic statistical and graphical functions
2013-02-25	smcUtils	Utility functions for sequential Monte Carlo
2013-02-25	tsbugs	Create time series BUGS models
2013-02-25	xtable	Export tables to LaTeX or HTML
2013-02-24	gcdnet	A generalized coordinate descent (GCD) algorithm for computing the solution path of the hybrid Huberized support vector machine (HHSVM) and its generalization
2013-02-24	gglasso	Group Lasso Penalized Learning Using A Unified BMD Algorithm
2013-02-24	imputeYn	Imputing the last largest censored observation/observations under weighted least squares
2013-02-24	jackknifeKME	Jackknife estimates of Kaplan-Meier estimators or integrals
2013-02-24	pbdNCDF4	Programming with Big Data – Interface to Parallel Unidata NetCDF4 Format Data Files
2013-02-24	poLCA	Polytomous variable Latent Class Analysis
2013-02-24	qualityTools	Statistical Methods for Quality Science
2013-02-23	cmm	Categorical Marginal Models
2013-02-23	conf.design	Construction of factorial designs
2013-02-23	DoE.base	Full factorials, orthogonal arrays and base utilities for DoE packages
2013-02-23	Exact	Unconditional Exact Tests
2013-02-23	fit.models	fit.models
2013-02-22	BCEA	Bayesian Cost Effectiveness Analysis
2013-02-22	cheb	Discrete Linear Chebyshev Approximation
2013-02-22	doMC	Foreach parallel adaptor for the multicore package
2013-02-22	epade	Easy Plots
2013-02-22	etable	Easy Table
2013-02-22	MEET	MEET: Motif Elements Estimation Toolkit
2013-02-22	nonparaeff	Nonparametric Methods for Measuring Efficiency and Productivity
2013-02-22	pendensity	Density Estimation with a Penalized Mixture Approach
2013-02-22	plfm	Probabilistic latent feature analysis of two-way two-mode frequency data
2013-02-22	triangle	Provides the standard distribution functions for the triangle distribution
2013-02-21	bspec	Bayesian spectral inference
2013-02-21	Digiroo2	An application programming interface for generating null models of social contacts based on individuals' space use
2013-02-21	DMR	Delete or Merge Regressors for linear model selection
2013-02-21	dsm	Density surface modelling of distance sampling data
2013-02-21	FisherEM	The Fisher-EM algorithm
2013-02-21	hash	Full feature implementation of hash/associated arrays/dictionaries
2013-02-21	PBImisc	A set of datasets used in my classes or in the book ,,Modele liniowe i mieszane w R, wraz z przykladami w analizie danych”
2013-02-21	PopGenome	An efficient swiss army knife for population genetic & genomic analysis
2013-02-21	RSAP	SAP Netweaver RFC connector for R
2013-02-21	rsm	Response-surface analysis
2013-02-21	surface	Fitting Hansen Models to Investigate Convergent Evolution
2013-02-21	TreeSimGM	Simulating Phylogenetic Trees under a General Model
2013-02-20	eaf	Plots of the Empirical Attainment Function
2013-02-20	microbenchmark	Sub microsecond accurate timing functions
2013-02-20	PKI	Public Key Infrastucture for R based on the X.509 standard
2013-02-20	selectr	Translate CSS Selectors to XPath Expressions
2013-02-20	tiff	Read and write TIFF images
2013-02-19	designGG	Computational tool for designing genetical genomics experiments
2013-02-19	DiceKriging	Kriging methods for computer experiments
2013-02-19	gemtc	GeMTC network meta-analysis
2013-02-19	gstat	spatial and spatio-temporal geostatistical modelling, prediction and simulation
2013-02-19	lmf	Functions for estimation and inference of selection in age-structured populations
2013-02-19	PropClust	Propensity Clustering and Decomposition
2013-02-19	psgp	Projected Spatial Gaussian Process (psgp) methods
2013-02-19	REBayes	Empirical Bayes Estimation and Inference in R
2013-02-19	taxize	Taxonomic information from around the web
2013-02-19	Zelig	Everyone's Statistical Software
2013-02-18	bayesQR	Bayesian quantile regression
2013-02-18	bild	bild: a package for BInary Longitudinal Data
2013-02-18	DAAGbio	Data Sets and Functions, for demonstrations with expression arrays and gene sequences
2013-02-18	effects	Effect Displays for Linear, Generalized Linear, Multinomial-Logit, Proportional-Odds Logit Models and Mixed-Effects Models
2013-02-18	hda	Heteroscedastic Discriminant Analysis
2013-02-18	imputation	imputation
2013-02-18	MARSS	Multivariate Autoregressive State-Space Modeling
2013-02-18	NbClust	An examination of indices for determining the number of clusters : NbClust Package
2013-02-18	RQuantLib	R interface to the QuantLib library
2013-02-17	audiolyzR	audiolyzR: Give your data a listen
2013-02-17	catenary	Fits a catenary to given points
2013-02-17	GetR	GetR: Calculate Guttman error trees in R
2013-02-16	BACprior	Sensitivity of the Bayesian Adjustment for Confounding (BAC) algorithm to the choice of hyperparameter omega
2013-02-16	crrstep	Stepwise covariate selection for the Fine & Gray competing risks regression model
2013-02-16	digest	Create cryptographic hash digests of R objects
2013-02-16	HIest	Hybrid index estimation
2013-02-16	multinomRob	Robust Estimation of Overdispersed Multinomial Regression Models
2013-02-16	rexpokit	R wrappers for EXPOKIT; other matrix functions
2013-02-15	bibtex	bibtex parser
2013-02-15	ENA	Ensemble Network Aggregation
2013-02-15	hmmm	hierarchical multinomial marginal models
2013-02-15	Iboot	Iboot: iterated bootstrap tests and confidence sets
2013-02-15	seriation	Infrastructure for seriation
2013-02-15	smdc	Document Similarity
2013-02-14	ecosim	Toolbox for Aquatic Ecosystem Modeling
2013-02-14	genSurv	Generating multi-state survival data
2013-02-14	monreg	Nonparametric monotone regression
2013-02-14	pearson7	Maximum Likelihood Inference for the Pearson VII Distribution with Shape Parameter 3/2
2013-02-14	poibin	The Poisson Binomial Distribution
2013-02-14	rfigshare	an R interface to figshare.com
2013-02-14	rfishbase	R Interface to FishBASE
2013-02-14	survC1	C-statistics for risk prediction models with censored survival data
2013-02-13	flexmix	Flexible Mixture Modeling
2013-02-13	MVN	Multivariate Normality Tests
2013-02-13	nsRFA	Non-supervised Regional Frequency Analysis
2013-02-13	Rcplex	R interface to CPLEX
2013-02-12	betapart	Partitioning beta diversity into turnover and nestedness components
2013-02-12	gvcm.cat	Regularized Categorial Effects/Categorial Effect Modifiers/Continuous/Smooth effects in GLMs
2013-02-12	tempdisagg	Methods for Temporal Disaggregation and Interpolation of Time Series
2013-02-11	ash	David Scott's ASH routines
2013-02-11	AssetPricing	Optimal pricing of assets with fixed expiry date
2013-02-11	emulator	Bayesian emulation of computer programs
2013-02-11	gensemble	generalized ensemble methods
2013-02-11	growthrate	Bayesian reconstruction of growth velocity
2013-02-11	hyperdirichlet	A generalization of the Dirichlet distribution
2013-02-11	hypergeo	The hypergeometric function
2013-02-11	mmeln	MMELN : Estimation of multinormal mixture distribution
2013-02-11	OPI	Open Perimetry Interface
2013-02-11	pairwise	Rasch Model Parameters by Pairwise Algorithm
2013-02-11	RcmdrPlugin.DoE	R Commander Plugin for (industrial) Design of Experiments
2013-02-11	RSvgDevice	An R SVG graphics device
2013-02-11	signal	Signal processing
2013-02-11	stringdist	String distance functions for R
2013-02-11	vitality	vitality: Fitting routines for the Vitality family of mortality models
2013-02-11	zooimage	Analysis of numerical zooplankton images
2013-02-10	BiasedUrn	Biased Urn model distributions
2013-02-10	maptools	Tools for reading and handling spatial objects
2013-02-10	mondate	Keep track of dates in terms of months
2013-02-10	RandomFields	Simulation and Analysis of Random Fields
2013-02-10	restorepoint	Debugging with restore points
2013-02-10	snowfall	Easier cluster computing (based on snow)
2013-02-09	bayess	Bayesian Essentials with R
2013-02-09	CaDENCE	Conditional Density Estimation Network Construction and Evaluation
2013-02-09	Compounding	Computing Continuous Distributions
2013-02-09	ebal	Entropy reweighting to create balanced samples
2013-02-09	ExactNumCI	Exact Confidence Interval for binomial proportions
2013-02-09	kdetrees	Nonparametric method for identifying discordant trees
2013-02-09	modiscloud	R tools for processing Level 2 Cloud Mask products from MODIS
2013-02-09	RcmdrPlugin.SCDA	Rcmdr plugin for designing and analyzing single-case experiments
2013-02-09	SweaveListingUtils	Utilities for Sweave together with TeX listings package
2013-02-08	fAsianOptions	EBM and Asian Option Valuation
2013-02-08	mboost	Model-Based Boosting
2013-02-08	pacose	iPACOSE, PACOSE and other methods for covariance selection
2013-02-08	PVR	Computes phylogenetic eigenvectors regression (PVR) and phylogenetic signal-representation curve (PSR) (with null and Brownian expectations)
2013-02-08	RandVar	Implementation of random variables
2013-02-08	ROptEstOld	Optimally robust estimation - old version
2013-02-08	StatDataML	implementation of the StatDataML proposal
2013-02-08	statmod	Statistical Modeling
2013-02-08	ternvis	Visualisation, verification and calibration of ternary probabilistic forecasts
2013-02-08	witness	This package fits eyewitness data using Clark's (2003) WITNESS model
2013-02-07	beadarrayFilter	Bead filtering for Illumina bead arrays
2013-02-07	catR	Procedures to generate IRT adaptive tests (CAT)
2013-02-07	climdex.pcic	PCIC implementation of Climdex routines
2013-02-07	debug	MVB's debugger for R
2013-02-07	dendroextras	Extra functions to cut, label and colour dendrogram clusters
2013-02-07	distr	Object oriented implementation of distributions
2013-02-07	distrDoc	Documentation for packages distr, distrEx, distrSim, distrTEst, distrTeach, distrMod, and distrEllipse
2013-02-07	distrEllipse	S4 classes for elliptically contoured distributions
2013-02-07	distrEx	Extensions of package distr
2013-02-07	distrMod	Object oriented implementation of probability models
2013-02-07	distrRmetrics	Package distr classes for distributions from Rmetrics
2013-02-07	distrSim	Simulation classes based on package distr
2013-02-07	distrTeach	Extensions of package distr for teaching Stochastics/Statistics in secondary school
2013-02-07	distrTEst	Estimation and Testing classes based on package distr
2013-02-07	fda.usc	Functional Data Analysis and Utilities for Statistical Computing (fda.usc)
2013-02-07	galts	Genetic algorithms and C-steps based LTS (Least Trimmed Squares) estimation
2013-02-07	NestedCohort	Survival Analysis for Cohorts with Missing Covariate Information
2013-02-07	nlsmsn	Fitting nonlinear models with scale mixture of skew-normal distributions
2013-02-07	orddom	Ordinal Dominance Statistics
2013-02-07	PCICt	Implementation of POSIXct work-alike for 365 and 360 day calendars
2013-02-07	qrnn	Quantile regression neural network
2013-02-07	RH2	DBI/RJDBC interface to h2 Database
2013-02-07	startupmsg	Utilities for start-up messages
2013-02-07	VineCopula	Statistical inference of vine copulas
2013-02-06	ExactPath	Exact solution paths for regularized LASSO regressions with L_1 penalty
2013-02-06	glmpath	L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model
2013-02-06	iplots	iPlots - interactive graphics for R
2013-02-06	partDSA	Partitioning using deletion, substitution, and addition moves
2013-02-06	rlme	Random Effects Nested Models
2013-02-06	slam	Sparse Lightweight Arrays and Matrices
2013-02-06	stoichcalc	R Functions for Solving Stoichiometric Equations
2013-02-06	tawny	Provides various portfolio optimization strategies including random matrix theory and shrinkage estimators
2013-02-06	wfe	Weighted Linear Fixed Effects Regression Models for Causal Inference
2013-02-05	AnthropMMD	A GUI for Mean Measures of Divergence
2013-02-05	exactLoglinTest	Monte Carlo Exact Tests for Log-linear models
2013-02-05	fail	File Abstraction Interface Layer (FAIL) mimicking a key-value store
2013-02-05	fractalrock	Generate fractal time series with non-normal returns distribution
2013-02-05	gaussquad	Collection of functions for Gaussian quadrature
2013-02-05	ghyp	A package on the generalized hyperbolic distribution and its special cases
2013-02-05	iGasso	Genetic association tests and utilities
2013-02-05	mcll	Monte Carlo Local Likelihood Estimation
2013-02-05	MSwM	Fitting Markov Switching Models
2013-02-05	nleqslv	Solve systems of non linear equations
2013-02-05	pacbpred	PAC-Bayesian Estimation and Prediction in Sparse Additive Models
2013-02-05	rjags	Bayesian graphical models using MCMC
2013-02-05	tractor.base	A package for reading, manipulating and visualising magnetic resonance images
2013-02-05	TSTutorial	Fitting and Predict Time Series Interactive Laboratory
2013-02-04	crawl	Fit continuous-time correlated random walk models to animal movement data
2013-02-04	futile.matrix	Futile matrix utilities
2013-02-04	infoDecompuTE	Information Decomposition of Two-phase Experiments
2013-02-04	nricens	NRI for risk prediction models with time to event data
2013-02-04	OOmisc	Ozgur-Ozlem Miscellaneous
2013-02-04	orthopolynom	Collection of functions for orthogonal and orthonormal polynomials
2013-02-04	PracTools	Tools for Designing and Weighting Survey Samples
2013-02-04	RcppEigen	Rcpp integration for the Eigen templated linear algebra library
2013-02-04	timeit	Easy profiling of R functions
2013-02-03	degreenet	Models for Skewed Count Distributions Relevant to Networks
2013-02-03	futile.any	Futile library to provide some polymorphic operations
2013-02-03	pdist	Partitioned Distance Function
2013-02-03	tawny.types	Common types for tawny
2013-02-03	TimeProjection	Time Projections
2013-02-02	protoclust	Hierarchical clustering with prototypes
2013-02-01	ArrayBin	My First Collection of Functions
2013-02-01	distory	Distance Between Phylogenetic Histories
2013-02-01	FindIt	R Package for Finding Heterogeneous Treatment Effects
2013-02-01	HandTill2001	Multiple Class Area under ROC Curve
2013-02-01	nCDunnett	Noncentral Dunnett's test distribution
2013-02-01	pairwiseCI	Confidence intervals for two sample comparisons
2013-01-31	argparse	Command line optional and positional argument parser
2013-01-31	Cubist	Rule- and Instance-Based Regression Modeling
2013-01-31	daewr	Design and Analysis of Experiments with R
2013-01-31	Devore7	Data sets from Devore's "Prob and Stat for Eng (7th ed)"
2013-01-31	dvn	Access to The Dataverse Network API
2013-01-31	ForImp	Imputation of missing values through a forward imputation algorithm
2013-01-31	gWidgetstcltk	Toolkit implementation of gWidgets for tcltk package
2013-01-31	MissingDataGUI	A GUI for Missing Data Exploration
2013-01-31	Sequential	Exact Sequential Analysis for Poisson Data
2013-01-30	expoTree	Calculate density dependent likelihood of a phylogenetic tree
2013-01-30	games	Statistical Estimation of Game-Theoretic Models
2013-01-30	KappaGUI	GUI for Cohen's and Fleiss' Kappa
2013-01-30	mlearning	Machine learning algorithms with unified interface and confusion matrices
2013-01-30	nephro	Biostatistics utilities for nephrology
2013-01-30	optparse	Command line option parser
2013-01-30	randomGLM	Random General Linear Model Prediction
2013-01-30	rdryad	Dryad API interface
2013-01-30	stargazer	LaTeX code for well-formatted regression and summary statistics tables
2013-01-30	YieldCurve	Modelling and estimation of the yield curve
2013-01-29	depmixS4	Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
2013-01-29	DivMelt	HRM Diversity Assay Analysis Tool
2013-01-29	EMT	Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data
2013-01-29	ExactCIdiff	Inductive Confidence Intervals for the difference between two proportions
2013-01-29	mobForest	Model based Random Forest analysis
2013-01-29	MonoPoly	Functions to fit monotone polynomials
2013-01-29	pa	Performance Attribution for Equity Portfolios
2013-01-29	PerformanceAnalytics	Econometric tools for performance and risk analysis
2013-01-29	plspm	Tools for Partial Least Squares Path Modeling
2013-01-29	SUE	Subsampling method
2013-01-29	tm.plugin.factiva	Import articles from Factiva using the tm text mining framework
2013-01-29	Vdgraph	This package creates variance dispersion graphs for response surface designs
2013-01-28	deal	Learning Bayesian Networks with Mixed Variables
2013-01-28	ggdendro	Tools for extracting dendrogram and tree diagram plot data for use with ggplot
2013-01-28	Grid2Polygons	Convert Spatial Grids to Polygons
2013-01-28	RcmdrPlugin.plotByGroup	Rcmdr plots by group using lattice
2013-01-28	seqPERM	Generates a permutation matrix based upon a sequence
2013-01-28	SteinerNet	Steiner Tree Approach for Graph Analysis
2013-01-28	svDialogs	SciViews GUI API - Dialog boxes
2013-01-28	svDialogstcltk	SciViews GUI API - Dialog boxes using Tcl/Tk
2013-01-28	svGUI	SciViews GUI API - Functions to manage GUIs
2013-01-28	svHttp	SciViews GUI API - R HTTP server
2013-01-28	svKomodo	SciViews GUI API - Functions to interface with Komodo Edit/IDE
2013-01-28	svSweave	SciViews GUI API - Sweave functions
2013-01-28	svTools	SciViews GUI API - Tools (wrapper for packages tools and codetools)
2013-01-28	svUnit	SciViews GUI API - Unit testing
2013-01-28	svWidgets	SciViews GUI API - Widgets & Windows
2013-01-27	bclust	Bayesian clustering using spike-and-slab hierarchical model, suitable for clustering high-dimensional data
2013-01-27	labeltodendro	Convert labels or tables to a dendrogram
2013-01-27	mokken	Mokken Scale Analysis in R
2013-01-26	emme2	Read and Write to an EMME/2 databank
2013-01-26	g.data	Delayed-Data Packages
2013-01-26	multic	Quantitative linkage analysis tools using the variance components approach
2013-01-26	Rvmmin	Variable metric nonlinear function minimization with bounds constraints
2013-01-26	SCVA	Single-Case Visual Analysis
2013-01-26	shapefiles	Read and Write ESRI Shapefiles
2013-01-26	sudoku	Sudoku Puzzle Generator and Solver
2013-01-26	UWHAM	Unbinned weighted histogram analysis method (UWHAM)
2013-01-25	coenoflex	Gradient-Based Coenospace Vegetation Simulator
2013-01-25	FI	Provide functions for forest inventory calculations
2013-01-25	marked	R Code for mark-recapture analysis
2013-01-25	metatest	Fit and test metaregression models
2013-01-25	misc3d	Miscellaneous 3D Plots
2013-01-25	mpt	Multinomial Processing Tree (MPT) Models
2013-01-25	pln	Polytomous logit-normit (graded logistic) model estimation
2013-01-25	RcmdrPlugin.StatisticalURV	Statistical URV Rcmdr Plug-In
2013-01-25	RcmdrPlugin.TeachingDemos	Rcmdr Teaching Demos Plug-In
2013-01-25	rebmix	The Rebmix Package
2013-01-24	cg	Comparison of groups
2013-01-24	dichromat	Color Schemes for Dichromats
2013-01-24	gte	Generalized Turnbull's estimator
2013-01-24	medSTC	A max-margin supervised Sparse Topical Coding Model
2013-01-24	pastecs	Package for Analysis of Space-Time Ecological Series
2013-01-24	RcmdrPlugin.SLC	SLC Rcmdr Plug-in
2013-01-24	SLC	Slope and level change
2013-01-23	Bclim	Bayesian Palaeoclimate Reconstruction from Pollen
2013-01-23	GenSA	R functions for Generalized Simulated Annealing
2013-01-23	hht	The Hilbert-Huang Transform: Tools and Methods
2013-01-23	libamtrack	Computational routines for proton and ion radiotherapy
2013-01-23	mvmeta	Multivariate meta-analysis and meta-regression
2013-01-23	RcmdrPlugin.HH	Rcmdr support for the HH package
2013-01-23	RcmdrPlugin.KMggplot2	An Rcmdr Plug-In for Kaplan-Meier Plots and Other Plots by Using the ggplot2 Package
2013-01-23	sirad	Functions for calculating daily solar radiation and evapotranspiration
2013-01-23	textcat	N-Gram Based Text Categorization
2013-01-22	optpart	Optimal partitioning of similarity relations
2013-01-22	PropCIs	Various confidence interval methods for proportions
2013-01-22	RCALI	Calculation of the Integrated Flow of Particles between Polygons
2013-01-22	segmented	Segmented relationships in regression models with breakpoints/changepoints estimation
2013-01-21	ARAMIS	A R Adaptive Multiple Importance Sampling
2013-01-21	aylmer	A generalization of Fisher's exact test
2013-01-21	Brobdingnag	Very large numbers in R
2013-01-21	contfrac	Continued fractions
2013-01-21	DierckxSpline	R companion to "Curve and Surface Fitting with Splines"
2013-01-21	elliptic	elliptic functions
2013-01-21	fpc	Flexible procedures for clustering
2013-01-21	gemtc.jar	GeMTC Java binary
2013-01-21	jaatha	A Fast Parameter Estimation Method for Evolutionary Biology
2013-01-21	magic	create and investigate magic squares
2013-01-21	MM	The multiplicative multinomial distribution
2013-01-21	multipol	multivariate polynomials
2013-01-21	multivator	A multivariate emulator
2013-01-21	Oarray	Arrays with arbitrary offsets
2013-01-21	partitions	Additive partitions of integers
2013-01-21	randomNames	Random name generating function and data set
2013-01-21	RcmdrPlugin.orloca	orloca Rcmdr Plug-in
2013-01-21	seg	A set of tools for residential segregation research
2013-01-21	semPLS	Structural Equation Modeling Using Partial Least Squares
2013-01-21	stellaR	stellar evolution tracks and isochrones
2013-01-21	TeachingDemos	Demonstrations for teaching and learning
2013-01-20	Benchmarking	Benchmark and frontier analysis using DEA and SFA
2013-01-20	matie	Measuring Association and Testing Independence Efficiently
2013-01-20	mmcm	Modified Maximum Contrast Method
2013-01-20	pequod	Moderated regression package
2013-01-20	quantmod	Quantitative Financial Modelling Framework
2013-01-19	adaptsmoFMRI	Adaptive Smoothing of FMRI Data
2013-01-19	bscr	Bayesian parametric and semi-parametric analyses for semi-competing risks data
2013-01-19	currentSurvival	Estimation of CCI and CLFS Functions
2013-01-19	RcppXts	Interface the xts API via Rcpp
2013-01-19	RNiftyReg	Medical image registration using the NiftyReg library
2013-01-19	streamR	Access to Twitter Streaming API via R
2013-01-18	BCBCSF	Bias-corrected Bayesian Classification with Selected Features
2013-01-18	blockrand	Randomization for block random clinical trials
2013-01-18	CVThresh	Level-Dependent Cross-Validation Thresholding
2013-01-18	edcc	Economic Design of Control Charts
2013-01-18	multiPIM	Variable Importance Analysis with Population Intervention Models
2013-01-18	obsSens	Sensitivity analysis for Observational studies
2013-01-18	partitionMap	Partition Maps
2013-01-18	rforensicbatwing	BATWING for calculating forensic trace-suspect match probabilities
2013-01-17	GWG	Calculation of probabilities for inadequate and excessive gestational weight gain
2013-01-17	haplo.stats	Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous
2013-01-17	RcmdrPlugin.survival	R Commander Plug-in for the survival Package
2013-01-17	SpatialVx	Spatial Forecast Verification
2013-01-16	Bhat	General likelihood exploration
2013-01-16	cgAUC	Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it
2013-01-16	moult	Models for Analysing Moult Data
2013-01-16	RcppExamples	Examples using Rcpp to interface R and C++
2013-01-16	rms.gof	Root-mean-square goodness-of-fit test for simple null hypothesis
2013-01-16	SamplingStrata	Optimal stratification of sampling frames for multipurpose sampling surveys
2013-01-16	setwidth	Set the value of options("width") on terminal emulators
2013-01-16	spacodiR	Spatial and Phylogenetic Analysis of Community Diversity
2013-01-16	splancs	Spatial and Space-Time Point Pattern Analysis
2013-01-15	aBioMarVsuit	A Biomarker Validation Suit for predicting Survival using gene signature
2013-01-15	cvAUC	Cross-Validated Area Under the ROC Curve Confidence Intervals
2013-01-15	descr	Descriptive statistics
2013-01-15	fishmethods	Fisheries Methods and Models in R
2013-01-15	influence.ME	Tools for detecting influential data in mixed effects models
2013-01-15	kolmim	An improved evaluation of Kolmogorov's distribution
2013-01-15	pensim	Simulation of high-dimensional data and parallelized repeated penalized regression
2013-01-15	RcppRoll	Fast rolling functions through Rcpp and RcppArmadillo
2013-01-15	rjson	JSON for R
2013-01-15	SMPracticals	Practicals for use with Davison (2003) Statistical Models
2013-01-15	sqlutils	Utilities for working with SQL files
2013-01-15	tweedie	Tweedie exponential family models
2013-01-14	allelematch	Identifying unique multilocus genotypes where genotyping error and missing data may be present
2013-01-14	ccgarch	Conditional Correlation GARCH models
2013-01-14	ESG	ESG - A package for asset projection
2013-01-14	indicspecies	Studying the statistical relationship between species and groups of sites
2013-01-14	mvoutlier	Multivariate outlier detection based on robust methods
2013-01-14	NPHMC	Sample Size Calculation for the Proportional Hazards Cure Model
2013-01-14	s20x	Stats 20x
2013-01-14	samplingbook	Survey Sampling Procedures
2013-01-14	subtype	Cluster analysis to find molecular subtypes and their assessment
2013-01-14	xoi	Tools for analyzing crossover interference
2013-01-13	actuar	Actuarial functions
2013-01-13	FAiR	Factor Analysis in R
2013-01-13	survivalROC	Time-dependent ROC curve estimation from censored survival data
2013-01-12	pass	Prediction and Stability Selection of Tuning Parameters
2013-01-12	tipom	Automated measure-based classification for lithic tools
2013-01-11	adehabitat	Analysis of habitat selection by animals
2013-01-11	aqfig	Functions to help display air quality model output and monitoring data
2013-01-11	easyanova	Analysis of variance and other important complementary analyzes
2013-01-11	fanovaGraph	Building Kriging models from FANOVA graphs
2013-01-11	gmm	Generalized Method of Moments and Generalized Empirical Likelihood
2013-01-11	gtx	Genetics ToolboX
2013-01-11	lpSolveAPI	R Interface for lp_solve version 5.5.2.0
2013-01-11	maticce	Mapping Transitions in Continuous Character Evolution
2013-01-11	mcprofile	Multiple Contrast Profiles
2013-01-11	orloca.es	Spanish version of orloca package
2013-01-11	PearsonDS	Pearson Distribution System
2013-01-11	rms	Regression Modeling Strategies
2013-01-11	Rook	Rook - a web server interface for R
2013-01-11	sig	Print function signatures
2013-01-11	spdep	Spatial dependence: weighting schemes, statistics and models
2013-01-10	maxlike	Model species distributions by estimating the probability of occurrence using presence-only data
2013-01-10	patchDVI	Package to patch .dvi files
2013-01-10	PK	Basic Non-Compartmental Pharmacokinetics
2013-01-10	quantregGrowth	Growth charts via regression quantiles
2013-01-10	rococo	RObust rank COrrelation COefficient and test
2013-01-10	SOLOMON	Parentage analysis
2013-01-10	spgwr	Geographically weighted regression
2013-01-10	treecm	Centre of mass assessment and consolidation of trees
2013-01-09	BioPhysConnectoR	BioPhysConnectoR
2013-01-09	parma	Portfolio Allocation and Risk Management Applications
2013-01-09	polywog	Bootstrapped Basis Regression with Oracle Model Selection
2013-01-09	PROTOLIDAR	PRocess TOol LIdar DAta in R
2013-01-09	ptw	Parametric Time Warping
2013-01-09	RcmdrPlugin.mosaic	Adds menu items to produce mosaic plots and assoc plots to Rcmdr
2013-01-09	Rniftilib	Rniftilib - R Interface to NIFTICLIB (V2.0.0: 2010-07-20)
2013-01-08	calmate	CalMaTe - Improved allele-specific copy number of SNP arrays for downstream segmentation
2013-01-08	clusterGeneration	random cluster generation (with specified degree of separation)
2013-01-08	HDclassif	High Dimensional Supervised Classification and Clustering
2013-01-08	hier.part	Hierarchical Partitioning
2013-01-08	HMMmix	The HMMmixture package
2013-01-08	lmodel2	Model II Regression
2013-01-08	phyclust	Phylogenetic Clustering (Phyloclustering)
2013-01-08	phylolm	Phylogenetic Linear Regression
2013-01-08	RcmdrPlugin.seeg	Rcmdr Plugin for seeg
2013-01-08	riskRegression	Risk regression for survival analysis
2013-01-08	seas	Seasonal analysis and graphics, especially for climatology
2013-01-08	TAHMMAnnot	Mixture model approach to compare two samples of Tiling Array data
2013-01-08	tis	Time Indexes and Time Indexed Series
2013-01-07	arulesSequences	Mining frequent sequences
2013-01-07	displayHTS	displayHTS
2013-01-07	HSROC	Joint meta-analysis of diagnostic test sensitivity and specificity with or without a gold standard reference test
2013-01-07	igraphdata	A collection of network data sets for the igraph package
2013-01-07	minerva	minerva: Maximal Information-Based Nonparametric Exploration R package for Variable Analysis
2013-01-07	rJPSGCS	R-interface to gene drop Java Programs for Statistical Genetics and Computational Statistics (JPSGCS)
2013-01-07	RRF	Regularized Random Forest
2013-01-07	sparsenet	Fit sparse linear regression models via nonconvex optimization
2013-01-07	stacomirtools	stacomi ODBC connection class
2013-01-06	DCluster	Functions for the detection of spatial clusters of diseases
2013-01-05	assertive	Readable check functions to ensure code integrity
2013-01-05	ETLUtils	Utility functions to execute standard ETL operations (using package ff) on large data
2013-01-05	GWASExactHW	Exact Hardy-Weinburg testing for Genome Wide Association Studies
2013-01-05	mclogit	Mixed Conditional Logit
2013-01-05	munfold	Metric Unfolding
2013-01-05	RcmdrPlugin.doBy	Rcmdr doBy Plug-In
2013-01-05	SpatialEpi	Performs various spatial epidemiological analyses
2013-01-05	Stat2Data	Datasets for Stat2
2013-01-05	trex	Truncated exact test for two-stage case-control design for studying rare genetic variants
2013-01-04	akmeans	Adaptive Kmeans algorithm based on threshold
2013-01-04	CORElearn	CORElearn - classification, regression, feature evaluation and ordinal evaluation
2013-01-04	proteomicdesign	Optimization of a multi-stage proteomic study
2013-01-04	RFLPtools	Tools to analyse RFLP data
2013-01-04	seeg	Statistics for Environmental Sciences, Engineering, and Geography
2013-01-04	sparcl	Perform sparse hierarchical clustering and sparse k-means clustering
2013-01-03	alr4	Data to accompany Applied Linear Regression 4rd edition
2013-01-03	analogue	Analogue and weighted averaging methods for palaeoecology
2013-01-03	cwhmisc	Miscellaneous Functions for math, plotting, printing, statistics, strings, and tools
2013-01-03	ldlasso	LD LASSO Regression for SNP Association Study
2013-01-03	partialOR	Partial Odds Ratio
2013-01-03	PoiClaClu	Classification and clustering of sequencing data based on a Poisson model
2013-01-03	superMDS	Implements the supervised multidimensional scaling (superMDS) proposal of Witten and Tibshirani (2011)
2013-01-02	AlleleRetain	Allele Retention, Inbreeding, and Demography
2013-01-02	basicspace	A Package to Recover a Basic Space from Issue Scales
2013-01-02	bootES	Bootstrap Effect Sizes
2013-01-02	HGNChelper	Handy functions for working with HGNC gene symbols and Affymetrix probeset identifiers
2013-01-02	REGENT	REGENT: Risk Estimation for Genetic and Environmental Traits
2013-01-02	royston	Royston's H Test: Multivariate Normality Test
2013-01-02	spacom	Spatially weighted context data for multilevel modelling
2013-01-01	apt	Asymmetric Price Transmission (apt)
2013-01-01	erer	Empirical Research in Economics with R
2012-12-31	HistData	Data sets from the history of statistics and data visualization
2012-12-31	MDPtoolbox	Markov Decision Processes toolbox
2012-12-31	RcmdrPlugin.SM	Rcmdr Sport Management Plug-In
2012-12-31	surveydata	Tools to manipulate survey data
2012-12-30	IPMpack	Builds and analyses Integral Projection Models (IPMs)
2012-12-30	MVB	Mutivariate Bernoulli log-linear model
2012-12-30	oem	Orthogonalizing Expectation maximization
2012-12-30	opefimor	Option Pricing and Estimation of Financial Models in R
2012-12-30	RcppClassicExamples	Examples using RcppClassic to interface R and C++
2012-12-30	Rjms	R messaging using Apache ActiveMQ and jms
2012-12-30	SPSL	Site Percolation on Square Lattice (SPSL)
2012-12-29	crs	Categorical Regression Splines
2012-12-29	psytabs	Produce well-formatted tables for psychological research
2012-12-29	zendeskR	Zendesk API Wrapper
2012-12-28	afmtools	Estimation, Diagnostic and Forecasting Functions for ARFIMA models
2012-12-28	iRefR	iRefIndex Manager
2012-12-28	trapezoid	The Trapezoidal Distribution
2012-12-27	bisoreg	Bayesian Isotonic Regression with Bernstein Polynomials
2012-12-27	fbati	Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families
2012-12-27	fgui	Function GUI
2012-12-27	FuzzyNumbers	Tools to deal with fuzzy numbers in R
2012-12-27	glmmAK	Generalized Linear Mixed Models
2012-12-27	orloca	The package deals with Operations Research LOCational Analysis models
2012-12-27	permGPU	permPGU: Using GPUs in Statistical Genomics
2012-12-27	randomizeBE	Function to create a random list for crossover studies
2012-12-26	micEconAids	Demand Analysis with the Almost Ideal Demand System (AIDS)
2012-12-26	rspear	Calculate SPEARpesticide in R (http://www.systemecology.eu/SPEAR/index.php)
2012-12-25	spider	Species Identity and Evolution in R
2012-12-25	truncgof	GoF tests allowing for left truncated data
2012-12-24	MedOr	Median Ordering Statistical R package
2012-12-24	MOCCA	Multi-objective optimization for collecting cluster alternatives
2012-12-23	ifultools	Insightful Research Tools
2012-12-23	ndl	Naive Discriminative Learning
2012-12-23	oro.dicom	Rigorous - DICOM Input / Output
2012-12-23	rmongodb	R-MongoDB driver
2012-12-23	RXKCD	Get XKCD comic from R
2012-12-23	svmpath	svmpath: the SVM Path algorithm
2012-12-22	cclust	Convex Clustering Methods and Clustering Indexes
2012-12-22	date	Functions for handling dates
2012-12-22	DiversitySampler	Functions for re-sampling a community matrix to compute diversity indices at different sampling levels
2012-12-22	dyn	Time Series Regression
2012-12-22	gdistance	distances and routes on geographical grids
2012-12-22	ISOcodes	Selected ISO codes
2012-12-22	MetaQC	MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis
2012-12-22	movMF	Mixtures of von Mises-Fisher Distributions
2012-12-22	oz	Plot the Australian coastline and states
2012-12-22	polynom	A collection of functions to implement a class for univariate polynomial manipulations
2012-12-22	proto	Prototype object-based programming
2012-12-22	RcppClassic	Deprecated 'classic' Rcpp API
2012-12-22	RKEA	R/KEA interface
2012-12-22	skmeans	Spherical k-Means Clustering
2012-12-22	tau	Text Analysis Utilities
2012-12-22	Unicode	Unicode data and utilities
2012-12-22	wordnet	WordNet Interface
2012-12-21	boilerpipeR	Interface to the boilerpipe Java library by Christian Kohlschutter (http://code.google.com/p/boilerpipe/)
2012-12-21	bpkde	Back-Projected Kernel Density Estimation
2012-12-21	BurStMisc	Burns Statistics miscellaneous
2012-12-21	caTools	Tools: moving window statistics, GIF, Base64, ROC AUC, etc
2012-12-21	gsg	Calculation of selection coefficients
2012-12-21	imputeMDR	The Multifactor Dimensionality Reduction (MDR) Analysis for Incomplete Data
2012-12-21	Lock5Data	Datasets for "Statistics: UnLocking the Power of Data"
2012-12-21	lossDev	Robust Loss Development Using MCMC
2012-12-21	mvinfluence	Influence Measures and Diagnostic Plots for Multivariate Linear Models
2012-12-21	mvnmle	ML estimation for multivariate normal data with missing values
2012-12-21	NSA	Post-normalization of total copy numbers
2012-12-21	ORMDR	ORMDR
2012-12-21	pedantics	Functions to facilitate power and sensitivity analyses for genetic studies of natural populations
2012-12-21	ReCiPa	Redundancy Control in Pathways databases
2012-12-21	rpart.plot	Plot rpart models. An enhanced version of plot.rpart
2012-12-21	sperich	Auxiliary functions to estimate centers of biodiversity
2012-12-21	tm.plugin.webmining	Retrieve structured, textual data from various web sources
2012-12-21	tsDyn	Nonlinear time series models with regime switching
2012-12-20	cghseg	Segmentation methods for array CGH analysis
2012-12-20	DynClust	non-parametric denoising and clustering method of noisy images both indexed by time and space
2012-12-20	hbmem	Hierarchical Bayesian Analysis of Recognition Memory
2012-12-20	Interpol.T	Hourly interpolation of multiple temperature daily series
2012-12-20	mlegp	Maximum Likelihood Estimates of Gaussian Processes
2012-12-19	clusterSim	Searching for optimal clustering procedure for a data set
2012-12-19	Kpart	Spline Fitting
2012-12-19	Laterality	Laterality
2012-12-19	LeafAngle	Fits, plots, and summarizes leaf angle distributions
2012-12-19	mapplots	Data visualisation on maps
2012-12-19	NlsyLinks	Utilities and kinship information for Behavior Genetics and Developmental research using the NLSY
2012-12-19	nose	nose Package for R
2012-12-19	rImpactStory	Retrieves altmetrics from ImpactStory. See http://impactstory.org for more about the metrics
2012-12-19	tabplotd3	Tabplotd3, interactive inspection of large data
2012-12-19	websockets	HTML 5 Websocket Interface for R
2012-12-18	ADM3	An Interpretation of the ADM method - automated detection algorithm
2012-12-18	binMto	Asymptotic simultaneous confidence intervals for many-to-one comparisons of proportions
2012-12-18	highriskzone	Determining and evaluating high-risk zones
2012-12-18	IBDsim	Simulation of chromosomal regions shared by family members
2012-12-18	RFOC	Graphics for Spherical Distributions and Earthquake Focal Mechanisms
2012-12-18	tabplot	Tableplot, a visualization of large datasets
2012-12-17	dblcens	Compute the NPMLE of distribution from doubly censored data
2012-12-17	EffectStars	Visualization of Categorical Response Models
2012-12-17	ICC	Functions facilitating the estimation of the Intraclass Correlation Coefficient
2012-12-17	MBESS	MBESS
2012-12-17	MFDA	Model Based Functional Data Analysis
2012-12-17	nlmrt	Functions for nonlinear least squares solutions
2012-12-17	pedigree	Pedigree functions
2012-12-17	RPMG	Graphical User Interface (GUI) for interactive R analysis sessions
2012-12-17	RTOMO	Visualization for seismic tomography
2012-12-17	SNPassoc	SNPs-based whole genome association studies
2012-12-16	WordPools	Classical word pools used in studies of learning and memory
2012-12-15	ConjointChecks	A package to check the cancellation axioms of conjoint measurement
2012-12-15	cosmoFns	Functions for cosmological distances, times, luminosities, etc
2012-12-15	dataframes2xls	dataframes2xls writes data frames to xls files
2012-12-15	FastRWeb	Fast Interactive Framework for Web Scripting Using R
2012-12-15	genetics	Population Genetics
2012-12-15	HaploSim	HaploSim
2012-12-15	LeLogicielR	Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (french)
2012-12-15	tonymisc	Functions for Econometrics Output
2012-12-15	wavelets	A package of functions for computing wavelet filters, wavelet transforms and multiresolution analyses
2012-12-14	AdaptFitOS	Adaptive Semiparametric Regression with Simultaneous Confidence Bands
2012-12-14	anametrix	Bidirectional connector to Anametrix API
2012-12-14	hapsim	Haplotype Data Simulation
2012-12-14	ltsa	Linear time series analysis
2012-12-14	MuFiCokriging	Multi-Fidelity Cokriging models
2012-12-14	Rsolnp	General Non-linear Optimization
2012-12-14	tables	Formula-driven table generation
2012-12-13	aqr	Interface methods to use with an ActiveQuant Master Server
2012-12-13	ARTIVA	Infer a time-varying DBN network from time series data
2012-12-13	boolfun	Cryptographic Boolean Functions
2012-12-13	celestial	Collection of common astronomical conversion routines
2012-12-13	conting	Bayesian analysis of contingency tables
2012-12-13	networkTomography	Tools for network tomography
2012-12-13	plm	Linear Models for Panel Data
2012-12-13	seqinr	Biological Sequences Retrieval and Analysis
2012-12-13	snowFT	Fault Tolerant Simple Network of Workstations
2012-12-13	sphereplot	Spherical plotting
2012-12-13	sprint	Simple Parallel R INTerface
2012-12-12	FinancialInstrument	Financial Instrument Model Infrastructure for R
2012-12-12	forams	Foraminifera and Community Ecology Analyses
2012-12-12	ForeCA	ForeCA - Forecastable Component Analysis
2012-12-12	MPDiR	Data sets and scripts for Modeling Psychophysical Data in R
2012-12-12	nutshell	Data for "R in a Nutshell"
2012-12-12	nutshell.audioscrobbler	Audioscrobbler data for "R in a Nutshell"
2012-12-12	nutshell.bbdb	Baseball Database for "R in a Nutshell"
2012-12-12	OptInterim	Optimal Two and Three Stage Designs for Single-Arm and Two-Arm Randomized Controlled Trials with a Long-Term Binary Endpoint
2012-12-12	PAGI	The package can identify the dysregulated KEGG pathways based on global influence from the internal effect of pathways and crosstalk between pathways
2012-12-12	Rcell	Microscopy Based Cytometry Data Analysis Package
2012-12-12	RQDA	R-based Qualitative Data Analysis
2012-12-11	aplpack	Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, and some slider functions
2012-12-11	DIME	DIME (Differential Identification using Mixture Ensemble)
2012-12-11	ExomeDepth	Calls CNV from exome sequence data
2012-12-11	extraTrees	ExtraTrees method
2012-12-11	IndependenceTests	Nonparametric tests of independence between random vectors
2012-12-11	mrds	Mark-Recapture Distance Sampling (mrds)
2012-12-11	MultiOrd	Generation of multivariate ordinal variates
2012-12-11	TUWmodel	Lumped hydrological model developed at the Vienna University of Technology for education purposes
2012-12-10	fBonds	Bonds and Interest Rate Models
2012-12-10	fNonlinear	Nonlinear and Chaotic Time Series Modelling
2012-12-10	fRegression	Regression Based Decision and Prediction
2012-12-10	ftnonpar	Features and Strings for Nonparametric Regression
2012-12-10	fUnitRoots	Trends and Unit Roots
2012-12-10	ifs	Iterated Function Systems
2012-12-10	infotheo	Information-Theoretic Measures
2012-12-10	nlstools	Tools for nonlinear regression diagnostics
2012-12-10	pcenum	Permutations and Combinations Enumeration
2012-12-10	PST	Probabilistic Suffix Trees
2012-12-10	SampleSizeMeans	Sample size calculations for normal means
2012-12-09	ggmcmc	Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference
2012-12-08	Bmix	Bayesian Sampling for Stick-breaking Mixtures
2012-12-08	RDIDQ	It perform Quality check on data
2012-12-08	rpartScore	Classification trees for ordinal responses
2012-12-07	eive	An algorithm for reducing errors-in-variable bias in simple linear regression
2012-12-07	glm2	Fitting Generalized Linear Models
2012-12-07	MixMAP	Implements the MixMAP algorithm
2012-12-07	mlogit	multinomial logit model
2012-12-07	MultinomialCI	Simultaneous confidence intervals for multinomial proportions according to the method by Sison and Glaz
2012-12-07	onemap	Software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses
2012-12-07	Rdistance	Distance sampling analyses
2012-12-07	SvyNom	Nomograms for Right-Censored Outcomes from Survey Designs
2012-12-06	LowRankQP	Low Rank Quadratic Programming
2012-12-06	MADAM	This package provides some basic methods for meta-analysis
2012-12-06	plyr	Tools for splitting, applying and combining data
2012-12-06	stringr	Make it easier to work with strings
2012-12-06	TraMineR	Trajectory miner: a toolbox for exploring and rendering sequence data
2012-12-05	Deducer	Deducer
2012-12-05	gtable	Arrange grobs in tables
2012-12-05	LDheatmap	Graphical display of pairwise linkage disequilibria between SNPs
2012-12-05	rGammaGamma	Gamma convolutions for methylation array background correction
2012-12-05	RInside	C++ classes to embed R in C++ applications
2012-12-05	scales	Scale functions for graphics
2012-12-05	simba	A Collection of functions for similarity analysis of vegetation data
2012-12-04	evaluate	Parsing and evaluation tools that provide more details than the default
2012-12-04	frontier	Stochastic Frontier Analysis
2012-12-04	glmc	Fitting Generalized Linear Models Subject to Constraints
2012-12-04	gridBase	Integration of base and grid graphics
2012-12-04	hSDM	hierarchical Bayesian species distribution models
2012-12-04	httpRequest	Basic HTTP Request
2012-12-04	IsotopeR	Stable isotope analysis
2012-12-04	pfa	Estimates False Discovery Proportion Under Arbitrary Covariance Dependence
2012-12-04	RcmdrPlugin.qual	Rcmdr plugin for quality control course
2012-12-04	reshape2	Flexibly reshape data: a reboot of the reshape package
2012-12-04	soilwater	soilwater: Implements parametric formulas for soil water retention or conductivity curve
2012-12-04	source.gist	Read R code from a GitHub Gist
2012-12-04	st	Shrinkage t Statistic and CAT Score
2012-12-04	WDI	World Development Indicators (World Bank)
2012-12-03	benchmark	Benchmark Experiments Toolbox
2012-12-03	KMsurv	Data sets from Klein and Moeschberger (1997), Survival Analysis
2012-12-03	muma	Metabolomics Univariate and Multivariate Analysis
2012-12-03	pbkrtest	Parametric bootstrap and Kenward Roger based methods for mixed model comparison
2012-12-03	Rmpfr	R MPFR - Multiple Precision Floating-Point Reliable
2012-12-03	StatMatch	Statistical Matching
2012-12-02	brainwaver	Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory
2012-12-02	emdist	Earth Mover's Distance
2012-12-02	fracdiff	Fractionally differenced ARIMA aka ARFIMA(p,d,q) models
2012-12-02	RJDBC	Provides access to databases through the JDBC interface
2012-12-01	AncestryMapper	Ancestry Mapper
2012-12-01	bwsurvival	Nonparametric conditional survival function for successive survival times
2012-12-01	cardidates	Identification of cardinal dates in ecological time series
2012-12-01	clusterPower	Power calculations for cluster-randomized and cluster-randomized crossover trials
2012-12-01	ffmanova	Fifty-fifty MANOVA
2012-12-01	sybilDynFBA	Dynamic FBA : dynamic flux balance analysis
2012-11-30	formula.tools	Utilities for working with formulas, expressions, calls and other R objects
2012-11-30	fptdApprox	Approximation of first-passage-time densities for diffusion processes
2012-11-30	fTrading	Technical Trading Analysis
2012-11-30	gcookbook	Data for "R Graphics Cookbook"
2012-11-30	operator.tools	Utilities for working with R's operators
2012-11-30	RFGLS	a family GWAS data-analysis tool that uses a generalized least squares method to perform single-marker association analysis
2012-11-30	rfPermute	Estimate permutation p-values for Random Forest importance metrics
2012-11-30	riv	Robust instrumental variables estimator
2012-11-30	rrdf	rrdf - support for the Resource Description Framework
2012-11-30	SixSigma	Six Sigma Tools for Quality and Process Improvement
2012-11-30	wgsea	Wilcoxon based gene set enrichment analysis
2012-11-29	BayesSingleSub	Computation of Bayes factors for interrupted time-series designs
2012-11-29	glmmLasso	Variable selection for generalized linear mixed models by L1-penalized estimation
2012-11-29	metagen	Generalised Inference in the Random Effects Meta Regression Model
2012-11-29	Stack	Stylized concatenation of data.frames or ffdfs
2012-11-29	YuGene	YuGene for comparing gene expression across platforms
2012-11-28	cda	Coupled dipole approximation in electromagnetic scattering
2012-11-28	goric	Generalized Order-Restricted Information Criterion
2012-11-28	LMest	Fit Latent Markov models in basic versions
2012-11-28	PenLNM	Group l1 penalized logistic normal multinomial (LNM) regression model
2012-11-28	plmm	Partially Linear Mixed Effects Model
2012-11-28	rkt	Mann-Kendall test, Seasonal and Regional Kendall Tests
2012-11-27	bootRes	Bootstrapped Response and Correlation Functions
2012-11-27	JASPAR	R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
2012-11-27	R2STATS	A GTK GUI for fitting and comparing GLM and GLMM in R
2012-11-27	RHive	R and Hive
2012-11-27	stocc	Fit a spatial occupancy model via Gibbs sampling
2012-11-27	TFX	R API to TrueFX(tm)
2012-11-26	distfree.cr	Distribution-free confidence region (distfree.cr)
2012-11-26	icensmis	Study Design and Data Analysis in the presence of error-prone diagnostic tests and self-reported outcomes
2012-11-26	maptree	Mapping, pruning, and graphing tree models
2012-11-26	rts	Raster time series analysis
2012-11-26	sparseHessianFD	Interface to ACM TOMS Algorithm 636, for computing sparse Hessians
2012-11-25	gRc	Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
2012-11-24	pairedCI	Confidence intervals for the ratio of locations and for the ratio of scales of two paired samples
2012-11-24	sabreR	Multivariate Generalized Linear Mixed Models
2012-11-24	stepwise	Stepwise detection of recombination breakpoints
2012-11-24	W2CWM2C	The W2CWM2C package is a set of functions to produce new graphical tools for wavelet correlation (bivariate and multivariate cases) using some routines from the waveslim and wavemulcor packages
2012-11-24	widals	Weighting by Inverse Distance with Adaptive Least Squares for Massive Space-Time Data
2012-11-23	rvertnet	Search VertNet database from R
2012-11-22	AdequacyModel	Adequacy of models
2012-11-22	AtelieR	A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests
2012-11-22	pheatmap	Pretty Heatmaps
2012-11-22	R0	Estimation of R0 and real-time reproduction number from epidemics
2012-11-21	numbers	Number-theoretic Functions
2012-11-21	rich	Computes and compares species richnesses
2012-11-20	ChoiceModelR	Choice Modeling in R
2012-11-20	heatmapFit	Heatmap Fit Statistic For Binary Dependent Variable Models
2012-11-20	LTPDvar	LTPD and AOQL plans for acceptance sampling inspection by variables
2012-11-20	PAS	Polygenic Analysis System (PAS)
2012-11-20	rSFA	Slow Feature Analysis in R
2012-11-20	sciplot	Scientific Graphing Functions for Factorial Designs
2012-11-20	splus2R	Supplemental S-PLUS functionality in R
2012-11-20	stppResid	Perform residual analysis on space-time point process models
2012-11-20	tnet	tnet: Software for Analysis of Weighted, Two-mode, and Longitudinal networks
2012-11-19	cherry	Multiple testing methods for exploratory research
2012-11-19	kml	K-means for Longitudinal data
2012-11-19	kml3d	K-means for joint Longitudinal data
2012-11-19	longitudinalData	Longitudinal Data
2012-11-19	NBPSeq	Negative Binomial Models for RNA-Sequencing Data
2012-11-19	odfWeave	Sweave processing of Open Document Format (ODF) files
2012-11-19	R.cache	Fast and light-weight caching (memoization) of objects
2012-11-18	protr	Protein Sequence Feature Extraction with R
2012-11-18	pwt	Penn World Table
2012-11-18	systemfit	Estimating Systems of Simultaneous Equations
2012-11-17	adagio	Discrete and Global Optimization Routines
2012-11-17	BAEssd	Bayesian Average Error approach to Sample Size Determination
2012-11-17	HWEintrinsic	Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem
2012-11-17	mederrRank	Bayesian Methods for Identifying the Most Harmful Medication Errors
2012-11-17	spectralGP	Approximate Gaussian processes using the Fourier basis
2012-11-16	StMoSim	Simulate QQ-Norm-Plot
2012-11-15	epibasix	Elementary Epidemiological Functions for Epidemiology and Biostatistics
2012-11-15	LSC	Local Statistical Complexity - Automatic Pattern Discovery in Spatio-Temporal Data
2012-11-15	PAWL	Implementation of the PAWL algorithm
2012-11-15	QTLRel	Tools for mapping of quantitative traits of genetically related individuals and calculating identity coefficients from a pedigree
2012-11-15	rgrs	Functions to make R usage in social sciences easier (in french)
2012-11-15	sendmailR	send email using R
2012-11-15	sExtinct	Calculates the historic date of extinction given a series of sighting events
2012-11-15	tmle	Targeted Maximum Likelihood Estimation
2012-11-14	bindata	Generation of Artificial Binary Data
2012-11-14	chron	Chronological objects which can handle dates and times
2012-11-14	GEVcdn	GEV conditional density estimation network
2012-11-14	ipred	Improved Predictors
2012-11-14	linLIR	linear Likelihood-based Imprecise Regression
2012-11-14	mmm2	Multivariate marginal models with shared regression parameters
2012-11-13	ade4TkGUI	ade4 Tcl/Tk Graphical User Interface
2012-11-13	adimpro	Adaptive Smoothing of Digital Images
2012-11-13	ismev	An Introduction to Statistical Modeling of Extreme Values
2012-11-13	LICORS	Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data
2012-11-13	miRada	MicroRNA Microarray Data Analysis
2012-11-13	mixcat	Mixed effects cumulative link and logistic regression models
2012-11-13	Oncotree	Estimating oncogenetic trees
2012-11-13	plsdepot	Partial Least Squares (PLS) Data Analysis Methods
2012-11-13	stratification	Univariate Stratification of Survey Populations
2012-11-13	transnet	Conducts transmission modeling on a bayesian network
2012-11-13	TSA	Time Series Analysis
2012-11-12	bitops	Bitwise Operations
2012-11-12	plsRcox	Partial least squares Regression for Cox models and related techniques
2012-11-11	egonet	Tool for ego-centric measures in Social Network Analysis
2012-11-11	eRm	Extended Rasch Modeling
2012-11-11	lcd	Learn Chain graphs via Decomposition
2012-11-11	nlt	A nondecimated lifting transform for signal denoising
2012-11-10	compound.Cox	Regression estimation based on the compound shrinkage method under the Cox proportional hazard model
2012-11-10	multitable	Simultaneous manipulation of multiple arrays of data, with data.list objects
2012-11-10	taRifx	Collection of utility and convenience functions
2012-11-10	VecStatGraphs2D	Vector analysis using graphical and analytical methods in 2D
2012-11-09	apTreeshape	Analyses of Phylogenetic Treeshape
2012-11-09	CorrBin	Nonparametrics with clustered binary data
2012-11-09	ldr	Methods for likelihood-based dimension reduction in regression
2012-11-09	Rhh	Calculating multilocus heterozygosity and heterozygosity-heterozygosity correlation
2012-11-09	scam	Shape constrained additive models
2012-11-09	STAR	Spike Train Analysis with R
2012-11-08	dglars	Differential Geometric LARS (dgLARS) method
2012-11-08	Distance	A simple way to fit detection functions to distance sampling data and calculate abundance/density for biological populations
2012-11-08	fracprolif	Fraction Proliferation via a quiescent growth model
2012-11-08	MCMCglmm	MCMC Generalised Linear Mixed Models
2012-11-08	mtsdi	Multivariate time series data imputation
2012-11-08	rAltmetric	Retrieves altmerics data for any published paper from altmetrics.com
2012-11-08	RTriangle	Triangle - A 2D Quality Mesh Generator and Delaunay Triangulator
2012-11-08	SDMTools	Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises
2012-11-08	SensitivityCaseControl	Sensitivity Analysis for Case-Control Studies
2012-11-08	support.CEs	Basic functions for supporting an implementation of choice experiments
2012-11-07	BACCO	Bayesian Analysis of Computer Code Output (BACCO)
2012-11-07	CNVassoc	Association analysis of CNV data
2012-11-07	compareGroups	descriptives by groups
2012-11-07	corrgram	Plot a correlogram
2012-11-07	Davies	The Davies quantile function
2012-11-07	DSpat	Spatial modelling for distance sampling data
2012-11-07	fExoticOptions	Exotic Option Valuation
2012-11-07	fMultivar	Multivariate Market Analysis
2012-11-07	fOptions	Basics of Option Valuation
2012-11-07	MixSim	Simulating Data to Study Performance of Clustering Algorithms
2012-11-07	POET	Principal Orthogonal ComplEment Thresholding (POET) method
2012-11-07	ppMeasures	Point pattern distances and prototypes
2012-11-07	ResistorArray	electrical properties of resistor networks
2012-11-07	spartan	Spartan (Simulation Parameter Analysis R Toolkit ApplicatioN)
2012-11-07	waved	Wavelet Deconvolution
2012-11-06	adlift	An adaptive lifting scheme algorithm
2012-11-06	BioMark	Find biomarkers in two-class discrimination problems
2012-11-06	coda	Output analysis and diagnostics for MCMC
2012-11-06	crrSC	Competing risks regression for Stratified and Clustered data
2012-11-06	dagR	R functions for directed acyclic graphs
2012-11-06	nparcomp	Perform multiple comparisons and compute simultaneous confidence intervals for the nonparametric relative contrast effects
2012-11-06	penalized	L1 (lasso and fused lasso) and L2 (ridge) penalized estimation in GLMs and in the Cox model
2012-11-06	POT	Generalized Pareto Distribution and Peaks Over Threshold
2012-11-06	SightabilityModel	Wildlife Sightability Modeling
2012-11-06	vowels	Vowel Manipulation, Normalization, and Plotting
2012-11-05	base64enc	Tools for base64 encoding
2012-11-05	binseqtest	Exact Binary Sequential Designs and Analysis
2012-11-05	Cairo	R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output
2012-11-05	CHsharp	Choi and Hall Clustering in 3d
2012-11-05	classInt	Choose univariate class intervals
2012-11-05	GeoXp	Interactive exploratory spatial data analysis
2012-11-05	homtest	Homogeneity tests for Regional Frequency Analysis
2012-11-05	irlba	Fast partial SVD by implicitly-restarted Lanczos bidiagonalization
2012-11-05	scagnostics	Compute scagnostics - scatterplot diagnostics
2012-11-05	transmission	Continuous time infectious disease models on individual data
2012-11-03	mcmcplots	Create Plots from MCMC Output
2012-11-03	mlica2	Independent Component Analysis using Maximum Likelihood
2012-11-03	rplotengine	R as a plotting engine
2012-11-03	tableplot	Represents tables as semi-graphic displays
2012-11-02	amei	Adaptive Management of Epidemiological Interventions
2012-11-02	frmqa	The Generalized Hyperbolic Distribution, Related Distributions and Their Applications in Finance
2012-11-02	IDPmisc	Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch)
2012-11-02	mratios	Inferences for ratios of coefficients in the general linear model
2012-11-02	RANN	Fast Nearest Neighbour Search
2012-11-02	sas7bdat	SAS Database Reader (experimental)
2012-11-02	sfsmisc	Utilities from Seminar fuer Statistik ETH Zurich
2012-11-02	smirnov	Provides two taxonomic coefficients from E. S. Smirnov "Taxonomic analysis" (1969) book
2012-11-02	spc	Statistical Process Control – Collection of Some Useful Functions
2012-11-01	argosfilter	Argos locations filter
2012-11-01	bit64	A S3 class for vectors of 64bit integers
2012-11-01	Dodge	Functions for Acceptance Sampling Ideas originated by H.F. Dodge
2012-11-01	EpiContactTrace	Epidemiological tool for contact tracing
2012-11-01	fpow	Computing the noncentrality parameter of the noncentral F distribution
2012-11-01	isopam	Isopam (Clustering)
2012-11-01	ljr	Logistic Joinpoint Regression
2012-11-01	MindOnStats	Data sets included in Utts and Heckard's Mind on Statistics
2012-11-01	openNLPmodels.en	openNLP Models for English
2012-11-01	openNLPmodels.es	openNLP Models for Spanish
2012-11-01	SwissAir	Air Quality Data of Switzerland for one year in 30 min Resolution
2012-11-01	xgobi	Interface to the XGobi and XGvis programs for graphical data analysis
2012-10-31	bandit	Functions for simple A/B split test and multi-armed bandit analysis
2012-10-31	dynCorr	Dynamic Correlation Package
2012-10-31	gamclass	Functions and data for a course on modern regression and classification
2012-10-31	MPV	Data Sets from Montgomery, Peck and Vining's Book
2012-10-31	NORMT3	Evaluates complex erf, erfc, Faddeeva, and density of sum of Gaussian and Student's t
2012-10-31	pbivnorm	Vectorized Bivariate Normal CDF
2012-10-31	qmap	Statistical transformations for post-processing climate model output
2012-10-31	tripack	Triangulation of irregularly spaced data
2012-10-31	waveband	Computes credible intervals for Bayesian wavelet shrinkage
2012-10-30	Actigraphy	Actigraphy Data Analysis
2012-10-30	cat	Analysis of categorical-variable datasets with missing values
2012-10-30	cgdsr	R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
2012-10-30	cudaBayesregData	Data sets for the examples used in the package "cudaBayesreg"
2012-10-30	degenes	Detection of differentially expressed genes
2012-10-30	dglm	Double generalized linear models
2012-10-30	drfit	Dose-response data evaluation
2012-10-30	expsmooth	Data sets from "Forecasting with exponential smoothing"
2012-10-30	fma	Data sets from "Forecasting: methods and applications" by Makridakis, Wheelwright & Hyndman (1998)
2012-10-30	gnumeric	Read data from files readable by gnumeric
2012-10-30	HPO.db	A set of annotation maps describing the Human Phenotype Ontology
2012-10-30	mathgraph	Directed and undirected graphs
2012-10-30	nonrandom	Stratification and matching by the propensity score
2012-10-30	RcmdrPlugin.coin	Rcmdr Coin Plug-In
2012-10-30	ScreenClean	Screen and clean variable selection procedures
2012-10-30	SigWinR	SigWin-detector implementation in R
2012-10-30	SimComp	Simultaneous Comparisons for Multiple Endpoints
2012-10-30	speff2trial	Semiparametric efficient estimation for a two-sample treatment effect
2012-10-30	TGUITeaching	Teaching GUI - prototype
2012-10-30	waterfall	Waterfall Charts in R
2012-10-29	ACCLMA	ACC & LMA Graph Plotting
2012-10-29	aCGH.Spline	Robust spline interpolation for dual color array comparative genomic hybridisation data
2012-10-29	AdaptFit	Adaptive Semiparametic Regression
2012-10-29	adk	Anderson-Darling K-Sample Test and Combinations of Such Tests
2012-10-29	ageprior	Prior distributions for molecular dating
2012-10-29	aggrisk	Estimate individual level risk using individual case data and spatially aggregated control data
2012-10-29	Agreement	Statistical Tools for Measuring Agreement
2012-10-29	alabama	Constrained nonlinear optimization
2012-10-29	allan	Automated Large Linear Analysis Node
2012-10-29	allanvar	Allan Variance Analysis
2012-10-29	AllPossibleSpellings	Computes all of a word's possible spellings
2012-10-29	anaglyph	3D Anaglyph Plots
2012-10-29	anapuce	Tools for microarray data analysis
2012-10-29	andrews	Andrews curves
2012-10-29	anesrake	ANES Raking Implementation
2012-10-29	APSIMBatch	Analysis the output of Apsim software
2012-10-29	asd	Simulations for adaptive seamless designs
2012-10-29	audit	Bounds for Accounting Populations
2012-10-29	BaM	Functions and datasets for books by Jeff Gill
2012-10-29	batade	HTML reports and so on
2012-10-29	bayespref	Hierarchical Bayesian analysis of ecological count data
2012-10-29	BayHaz	R Functions for Bayesian Hazard Rate Estimation
2012-10-29	bdpv	Inference and design for predictive values in binary diagnostic tests
2012-10-29	bentcableAR	Bent-Cable Regression for Independent Data or Autoregressive Time Series
2012-10-29	betafam	Detecting rare variants for quantitative traits using nuclear families
2012-10-29	betaper	Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data
2012-10-29	bethel	Bethel's algorithm
2012-10-29	BGSIMD	Block Gibbs Sampler with Incomplete Multinomial Distribution
2012-10-29	bimetallic	Power for SNP analyses using silver standard cases
2012-10-29	Biodem	Biodemography functions
2012-10-29	biopara	Self-contained parallel system for R
2012-10-29	bivarRIpower	Sample size calculations for bivariate longitudinal data
2012-10-29	biwt	Functions to compute the biweight mean vector and covariance & correlation matrices
2012-10-29	bootspecdens	Testing equality of spectral densities
2012-10-29	BSagri	Statistical methods for safety assessment in agricultural field trials
2012-10-29	caGUI	A Tcl/Tk GUI for the functions in the ca package
2012-10-29	CalciOMatic	Automatic Calcium Imaging Analysis
2012-10-29	CARramps	Reparameterized and marginalized posterior sampling for conditional autoregressive models
2012-10-29	caschrono	Séries temporelles avec R - Méthodes et cas
2012-10-29	CCA	Canonical correlation analysis
2012-10-29	CCM	Correlation classification method (CCM)
2012-10-29	CCP	Significance Tests for Canonical Correlation Analysis (CCA)
2012-10-29	CDFt	Statistical downscaling through CDF-transform
2012-10-29	CellularAutomaton	One-Dimensional Cellular Automata
2012-10-29	CFL	Compensatory Fuzzy Logic
2012-10-29	charlson	Converts listwise icd9 data into comorbidity count and Charlson Index
2012-10-29	cimis	R package for retrieving data from CIMIS
2012-10-29	CircStats	Circular Statistics, from "Topics in circular Statistics" (2001)
2012-10-29	climatol	Some Tools for Climatology: series homogenization, plus windrose and Walter&Lieth diagrams
2012-10-29	clusterCons	Calculate the consensus clustering result from re-sampled clustering experiments with the option of using multiple algorithms and parameter
2012-10-29	CMC	Cronbach-Mesbah Curve
2012-10-29	coarseDataTools	A collection of functions to help with analysis of coarse infectious disease data
2012-10-29	colcor	Tests for column correlation in the presence of row correlation
2012-10-29	colorRamps	Builds color tables
2012-10-29	combinat	combinatorics utilities
2012-10-29	CombMSC	Combined Model Selection Criteria
2012-10-29	comorbidities	Categorizes ICD-9-CM codes based on published comorbidity indices
2012-10-29	CompareTests	Estimate diagnostic accuracy (sensitivity, specificity, etc) and agreement statistics when one test is conducted on only a subsample of specimens
2012-10-29	compoisson	Conway-Maxwell-Poisson Distribution
2012-10-29	concor	Concordance
2012-10-29	condGEE	Parameter estimation in conditional GEE for recurrent event gap times
2012-10-29	ConvergenceConcepts	Seeing convergence concepts in action
2012-10-29	COP	Variables selection for index models via correlation pursuit
2012-10-29	corrperm	Permutation Tests of Correlation with Repeated Measurements
2012-10-29	cotrend	Consistant Cotrend Rank Selection
2012-10-29	cumSeg	Change point detection in genomic sequences
2012-10-29	dbConnect	Provides a graphical user interface to connect with databases that use MySQL
2012-10-29	dinamic	DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors
2012-10-29	discretization	Data preprocessing, discretization for classification
2012-10-29	divagis	Provides tools for quality checks of georeferenced plant species accessions
2012-10-29	dpa	Dynamic Path Approach
2012-10-29	drm	Regression and association models for repeated categorical data
2012-10-29	DTDA	Doubly truncated data analysis
2012-10-29	DTK	Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes
2012-10-29	EbayesThresh	Empirical Bayes Thresholding and Related Methods
2012-10-29	eigeninv	Generates (dense) matrices that have a given set of eigenvalues
2012-10-29	el.convex	empirical likelihood ratio tests for means
2012-10-29	elec	Collection of functions for statistical election audits
2012-10-29	EMJumpDiffusion	EM-Algorithm for Jump Diffusion processes
2012-10-29	emplik2	Empirical-likelihood test (two-sample, censored data)
2012-10-29	EngrExpt	Data sets from "Introductory Statistics for Engineering Experimentation"
2012-10-29	ESPRESSO	Power Analysis and Sample Size Calculation
2012-10-29	evora	Epigenetic Variable Outliers for Risk prediction Analysis
2012-10-29	eyetracking	Eyetracking Helper Functions
2012-10-29	FactMixtAnalysis	Factor Mixture Analysis with covariates
2012-10-29	FAdist	Distributions that are sometimes used in hydrology
2012-10-29	FAMT	Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data
2012-10-29	FAwR	Functions and Datasets for "Forest Analytics with R"
2012-10-29	fdrci	Permutation-based FDR Point and Confidence Interval Estimation
2012-10-29	fds	Functional data sets
2012-10-29	FeaLect	Scores features for Feature seLection
2012-10-29	fgac	Generalized Archimedean Copula
2012-10-29	fit4NM	NONMEM platform
2012-10-29	fitDRC	Fitting Density Ratio Classes
2012-10-29	FITSio	FITS (Flexible Image Transport System) utilities
2012-10-29	flubase	Baseline of mortality free of influenza epidemics
2012-10-29	Flury	Data Sets from Flury, 1997
2012-10-29	forensic	Statistical Methods in Forensic Genetics
2012-10-29	forward	Forward search
2012-10-29	FourScores	FourScores - A game for two players
2012-10-29	freqMAP	Frequency Moving Average Plots (MAP) of Multinomial Data by a Continuous Covariate
2012-10-29	frt	Full Randomization Test
2012-10-29	FTICRMS	Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data
2012-10-29	FunNet	Integrative Functional Analysis of Transcriptional Networks
2012-10-29	GA4Stratification	A genetic algorithm approach to determine stratum boundaries and sample sizes of each stratum in stratified sampling
2012-10-29	GAD	GAD: Analysis of variance from general principles
2012-10-29	GANPAdata	The GANPA Datasets Package
2012-10-29	gbs	Package for Generalized Birnbaum-Saunders Distributions
2012-10-29	genalg	R Based Genetic Algorithm
2012-10-29	GeneF	Package for Generalized F-statistics
2012-10-29	GeneReg	Construct time delay gene regulatory network
2012-10-29	geomapdata	Data for topographic and Geologic Mapping
2012-10-29	gibbs.met	Naive Gibbs Sampling with Metropolis Steps
2012-10-29	globalboosttest	Testing the additional predictive value of high-dimensional data
2012-10-29	gmt	Interface between GMT Map-Making Software and R
2012-10-29	gPdtest	Bootstrap goodness-of-fit test for the generalized Pareto distribution
2012-10-29	gregmisc	Greg's Miscellaneous Functions
2012-10-29	GRRGI	Gauge R and R Confidence Intervals
2012-10-29	gvlma	Global Validation of Linear Models Assumptions
2012-10-29	gwerAM	Controlling the genome-wide type I error rate in association mapping experiments
2012-10-29	HadoopStreaming	Utilities for using R scripts in Hadoop streaming
2012-10-29	HAPim	HapIM
2012-10-29	haplo.ccs	Estimate Haplotype Relative Risks in Case-Control Data
2012-10-29	heatmap.plus	Heatmap with more sensible behavior
2012-10-29	HMR	Flux estimation with static chamber data
2012-10-29	holdem	Texas Holdem simulator
2012-10-29	homeR	Functions useful for building physics
2012-10-29	Hotelling	Hotelling's T-squared test and variants
2012-10-29	hotspots	Hot spots
2012-10-29	HPbayes	Heligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling
2012-10-29	HWEBayes	Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing
2012-10-29	icomp	ICOMP criterion
2012-10-29	iFad	An integrative factor analysis model for drug-pathway association inference
2012-10-29	igraphtosonia	Convert iGraph graps to SoNIA .son files
2012-10-29	Imap	Interactive Mapping
2012-10-29	IMIS	Increamental Mixture Importance Sampling
2012-10-29	ImpactIV	Identifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method
2012-10-29	InfDim	Infine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories
2012-10-29	insideRODE	insideRODE includes buildin functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes
2012-10-29	integrOmics	end of integrOmics package
2012-10-29	Interpol	Interpolation of amino acid sequences
2012-10-29	intRegGOF	Integrated Regression Goodness of Fit
2012-10-29	introgress	methods for analyzing introgression between divergent lineages
2012-10-29	IPSUR	Introduction to Probability and Statistics Using R
2012-10-29	ISDA.R	interval symbolic data analysis for R
2012-10-29	isopat	Calculation of isotopic pattern for a given molecular formula
2012-10-29	iWebPlots	Interactive web-based plots
2012-10-29	Julia	Fractal Image Data Generator
2012-10-29	klin	Linear equations with Kronecker structure
2012-10-29	KsPlot	Check the power of seveal statistical models
2012-10-29	kzft	Kolmogorov-Zurbenko Fourier Transform and Applications
2012-10-29	labeling	Axis Labeling
2012-10-29	LearnBayes	Functions for Learning Bayesian Inference
2012-10-29	LIStest	Longest Increasing Subsequence Independence Test
2012-10-29	lmec	Linear Mixed-Effects Models with Censored Responses
2012-10-29	logregperm	Inference in Logistic Regression
2012-10-29	longRPart	Recursive partitioning of longitudinal data using mixed-effects models
2012-10-29	LoopAnalyst	A collection of tools to conduct Levins' Loop Analysis
2012-10-29	lqa	Penalized Likelihood Inference for GLMs
2012-10-29	lss	the accelerated failure time model to right censored data based on least-squares principle
2012-10-29	LTR	Perform LTR analysis on microarray data
2012-10-29	MAc	Meta-Analysis with Correlations
2012-10-29	MAclinical	Class prediction based on microarray data and clinical parameters
2012-10-29	MAd	Meta-Analysis with Mean Differences
2012-10-29	mAr	Multivariate AutoRegressive analysis
2012-10-29	maRketSim	Market simulator for R
2012-10-29	MBCluster.Seq	Model-Based Clustering for RNA-seq Data
2012-10-29	mcgibbsit	Warnes and Raftery's MCGibbsit MCMC diagnostic
2012-10-29	MChtest	Monte Carlo hypothesis tests with Sequential Stopping
2012-10-29	MCUSUM	Multivariate Cumulative Sum (MCUSUM) Control Chart
2012-10-29	MEMSS	Data sets from Mixed-effects Models in S
2012-10-29	metaMA	Meta-analysis for MicroArrays
2012-10-29	MEWMA	Multivariate Exponentially Weighted Moving Average (MEWMA) Control Chart
2012-10-29	Miney	Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix)
2012-10-29	minxent	Entropy Optimization Distributions
2012-10-29	miP	Multiple Imputation Plots
2012-10-29	mixdist	Finite Mixture Distribution Models
2012-10-29	mixedQF	Estimator with Qudratics Forms in Mixeds Models
2012-10-29	mixfdr	Computes false discovery rates and effect sizes using normal mixtures
2012-10-29	MKLE	Maximum kernel likelihood estimation
2012-10-29	moonsun	Basic astronomical calculations with R
2012-10-29	mpa	CoWords Method
2012-10-29	mtcreator	Creating MAGE-TAB files using mtcreator
2012-10-29	multibiplotGUI	Multibiplot Analysis in R
2012-10-29	Multiclasstesting	Performance of N-ary classification testing
2012-10-29	mvsf	Shapiro-Francia Multivariate Normality Test
2012-10-29	mvShapiroTest	Generalized Shapiro-Wilk test for multivariate normality
2012-10-29	ndvits	NDVI Time series extraction and analysis
2012-10-29	neldermead	R port of the Scilab neldermead module
2012-10-29	NetCluster	Clustering for networks
2012-10-29	NetData	Network Data for McFarland's SNA R labs
2012-10-29	nga	NGA Earthquake Ground Motion Prediction Equations
2012-10-29	NightDay	Night and Day Boundary Plot Funtion
2012-10-29	nlADG	Regression in the Normal Linear ADG Model
2012-10-29	NMFN	Non-negative Matrix Factorization
2012-10-29	NMRS	NMR Spectroscopy
2012-10-29	normwhn.test	Normality and White Noise Testing
2012-10-29	nplplot	Plotting non-parametric linkage results
2012-10-29	NPMPM	tertiary probabilistic model in predictive microbiology for use in food manufacture
2012-10-29	nppbib	Nonparametric Partially-Balanced Incomplete Block Design Analysis
2012-10-29	ocomposition	Gibbs sampler for ordered compositional data
2012-10-29	OligoSpecificitySystem	Oligo Specificity System
2012-10-29	omd	filter the molecular descriptors for QSAR
2012-10-29	oncomodel	Maximum likelihood tree models for oncogenesis
2012-10-29	OPE	Outer-product emulator
2012-10-29	optimbase	R port of the Scilab optimbase module
2012-10-29	optimsimplex	R port of the Scilab optimsimplex module
2012-10-29	ORDER2PARENT	Estimate parent distributions with data of several order statistics
2012-10-29	ORIClust	Order-restricted Information Criterion-based Clustering Algorithm
2012-10-29	paleoMAS	Paleoecological Analysis
2012-10-29	pamm	Power analysis for random effects in mixed models
2012-10-29	parfossil	Parallelized functions for palaeoecological and palaeogeographical analysis
2012-10-29	partitionMetric	Compute a distance metric between two partitions of a set
2012-10-29	parviol	Parviol
2012-10-29	PASWR	PROBABILITY and STATISTICS WITH R
2012-10-29	PCS	Calculate the probability of correct selection (PCS)
2012-10-29	pcse	Panel-Corrected Standard Error Estimation in R
2012-10-29	Peaks	Peaks
2012-10-29	penalizedSVM	Feature Selection SVM using penalty functions
2012-10-29	PermAlgo	Permutational algorithm to simulate survival data
2012-10-29	permtest	Permutation test to compare variability within and distance between two groups
2012-10-29	pesticides	Analysis of single serving and composite pesticide residue measurements
2012-10-29	pGLS	Generalized Least Square in comparative Phylogenetics
2012-10-29	pgs	Precision of Geometric Sampling
2012-10-29	phylotools	Phylogenetic tools for Eco-phylogenetics
2012-10-29	PKmodelFinder	Software for Pharmacokinetic model
2012-10-29	plotSEMM	Graphing nonlinear latent variable interactions in SEMM
2012-10-29	PL.popN	Population Size Estimation
2012-10-29	plsgenomics	PLS analyses for genomics
2012-10-29	poistweedie	Poisson-Tweedie exponential family models
2012-10-29	Pomic	Pattern Oriented Modelling Information Criterion
2012-10-29	PopGenKit	Useful functions for (batch) file conversion and data resampling in microsatellite datasets
2012-10-29	popPK	Summary of Population Pharmacokinetic Analysis
2012-10-29	powerGWASinteraction	Power Calculations for Interactions for GWAS
2012-10-29	ppcor	Partial and Semi-partial (Part) correlation
2012-10-29	ppls	Penalized Partial Least Squares
2012-10-29	pps	Functions for PPS sampling
2012-10-29	pragma	Provides a pragma / directive / keyword syntax for R
2012-10-29	PredictiveRegression	Prediction Intervals for Three Basic Statistical Models
2012-10-29	predmixcor	Classification rule based on Bayesian mixture models with feature selection bias corrected
2012-10-29	ProbForecastGOP	Probabilistic weather forecast using the GOP method
2012-10-29	pwr	Basic functions for power analysis
2012-10-29	qlspack	Quasi Least Square Package
2012-10-29	QLSpline	QLSpline
2012-10-29	qPCR.CT	qPCR data analysis and plot package
2012-10-29	QSARdata	Quantitative Structure Activity Relationship (QSAR) Data Sets
2012-10-29	QT	QT Knowledge Management System
2012-10-29	qtlDesign	Design of QTL experiments
2012-10-29	RadioSonde	Tools for plotting skew-T diagrams and wind profiles
2012-10-29	rateratio.test	Exact rate ratio test
2012-10-29	RAtmosphere	Standard Atmosperic profiles
2012-10-29	RcmdrPlugin.qcc	Rcmdr qcc Plug-In
2012-10-29	rdetools	Relevant Dimension Estimation (RDE) in Feature Spaces
2012-10-29	Read.isi	Automated access to old World Fertility Survey data saved in fixed-width format based on ISI-formatted codebooks
2012-10-29	reams	Resampling-Based Adaptive Model Selection
2012-10-29	Rearrangement	Monotonize point and interval functional estimates by rearrangement
2012-10-29	Records	Record Values and Record Times
2012-10-29	regsubseq	Detect and Test Regular Sequences and Subsequences
2012-10-29	REQS	R/EQS Interface
2012-10-29	Rfit	Rank Estimation for Linear Models
2012-10-29	RGCCA	Regularized Generalized Canonical Correlation Analysis
2012-10-29	RHT	Regularized Hotelling's T-square Test for Pathway (Gene Set) Analysis
2012-10-29	ringscale	Ringscale
2012-10-29	rmeta	Meta-analysis
2012-10-29	robustreg	Robust Regression Functions
2012-10-29	ROCwoGS	Non-parametric estimation of ROC curves without Gold Standard Test
2012-10-29	RODM	R interface to Oracle Data Mining
2012-10-29	rpubchem	rpubchem - Interface to the PubChem Collection
2012-10-29	RPyGeo	ArcGIS Geoprocessing in R via Python
2012-10-29	rseedcalc	Estimating the proportion of genetically modified stacked seeds in seedlots via multinomial group testing
2012-10-29	Rsundials	Suite of Nonlinear Differential Algebraic Equations Solvers in R
2012-10-29	rSymPy	R interface to SymPy computer algebra system
2012-10-29	Rvelslant	Downhole Seismic Analysis in R
2012-10-29	Ryacas	R interface to the yacas computer algebra system
2012-10-29	sbgcop	Semiparametric Bayesian Gaussian copula estimation and imputation
2012-10-29	sddpack	Semidiscrete Decomposition
2012-10-29	sdef	Synthesizing List of Differentially Expressed Features
2012-10-29	sdtoolkit	Scenario Discovery Tools to Support Robust Decision Making
2012-10-29	separationplot	Separation Plots
2012-10-29	seqCBS	CN Profiling using Sequencing and CBS
2012-10-29	seqmon	Sequential Monitoring of Clinical Trials
2012-10-29	seqRFLP	Simulation and visualization of restriction enzyme cutting pattern from DNA sequences
2012-10-29	session	Functions for interacting with, saving and restoring R sessions
2012-10-29	SHIP	SHrinkage covariance Incorporating Prior knowledge
2012-10-29	sifds	Swedish inflation forecast data set
2012-10-29	sigclust	Statistical Significance of Clustering
2012-10-29	SimultAnR	Correspondence and Simultaneous Analysis
2012-10-29	SIN	A SINful Approach to Selection of Gaussian Graphical Markov Models
2012-10-29	sisus	SISUS: Stable Isotope Sourcing using Sampling
2012-10-29	SiZer	SiZer: Significant Zero Crossings
2012-10-29	skewt	The Skewed Student-t Distribution
2012-10-29	smco	A simple Monte Carlo optimizer using adaptive coordinate sampling
2012-10-29	SMIR	Companion to Statistical Modelling in R
2012-10-29	SMVar	Structural Model for variances
2012-10-29	snort	Social Network-Analysis On Relational Tables
2012-10-29	SNPmaxsel	Maximally selected statistics for SNP data
2012-10-29	snp.plotter	snp.plotter
2012-10-29	spaa	SPecies Association Analysis
2012-10-29	spi	Compute SPI index
2012-10-29	sporm	Semiparametric proportional odds rate model
2012-10-29	squash	Color-based plots for multivariate visualization
2012-10-29	sra	Selection Response Analysis
2012-10-29	ssanv	Sample Size Adjusted for Nonadherence or Variability of input parameters
2012-10-29	ssize.fdr	Sample Size Calculations for Microarray Experiments
2012-10-29	Stem	Spatio-temporal models in R
2012-10-29	stepp	Subpopulation Treatment Effect Pattern Plot (STEPP)
2012-10-29	stinepack	Stineman, a consistently well behaved method of interpolation
2012-10-29	StochaTR	Solving stochastic linear programs with a single risk constraint
2012-10-29	stratigraph	Toolkit for the plotting and analysis of stratigraphic and palaeontological data
2012-10-29	StreamMetabolism	Stream Metabolism-A package for calculating single station metabolism from diurnal Oxygen curves
2012-10-29	StressStrength	Computation and estimation of reliability of stress-strength models
2012-10-29	survBayes	Fits a proportional hazards model to time to event data by a Bayesian approach
2012-10-29	survJamda	Survival prediction by joint analysis of microarray gene expression data
2012-10-29	survJamda.data	survJamda.data
2012-10-29	symbols	Symbol plots
2012-10-29	TANOVA	Time Course Analysis of Variance for Microarray
2012-10-29	TeachingSampling	Sampling designs and parameter estimation in finite population
2012-10-29	TERAplusB	Test for A+B Traditional Escalation Rule
2012-10-29	tfer	Forensic Glass Transfer Probabilities
2012-10-29	TilePlot	Characterization of functional genes in complex microbial communities using tiling DNA microarrays
2012-10-29	tilting	Variable selection via Tilted Correlation Screening algorithm
2012-10-29	titan	Titration analysis for mass spectrometry data
2012-10-29	TRIANG	Symmetric discrete triangular distributions
2012-10-29	TRIANGG	General discrete triangular distribution
2012-10-29	trifield	Some basic facilities for ternary fields and plots
2012-10-29	trimcluster	Cluster analysis with trimming
2012-10-29	tslars	Least angle regression for time series analysis
2012-10-29	TSPC	Prediction using time-course gene expression
2012-10-29	Tsphere	Transposable Sphering for Large-Scale Inference with Correlated Data
2012-10-29	ttrTests	Standard Backtests for Technical Trading Rules in Financial Data
2012-10-29	unbalhaar	Function estimation via Unbalanced Haar wavelets
2012-10-29	UScensus2000blkgrp	US Census 2000 Block Group Shapefiles and Additional Demographic Data
2012-10-29	UScensus2000cdp	US Census 2000 Designated Places Shapefiles and Additional Demographic Data
2012-10-29	UScensus2000tract	US Census 2000 Tract Level Shapefiles and Additional Demographic Data
2012-10-29	validator	External and Internal Validation Indices
2012-10-29	vegetarian	Jost Diversity Measures for Community Data
2012-10-29	VIF	VIF Regression: A Fast Regression Algorithm For Large Data
2012-10-29	violinmplot	Combination of violin plot with mean and standard deviation
2012-10-29	VizCompX	Visualisation of Computer Models
2012-10-29	walkscoreAPI	Walk Score and Transit Score API
2012-10-29	WaveCD	Wavelet change point detection for array CGH data
2012-10-29	wavemulcor	Wavelet routine for multiple correlation
2012-10-29	weirs	A Hydraulics Package to Compute Open-Channel Flow over Weirs
2012-10-29	wikibooks	Functions and datasets of the german WikiBook "GNU R"
2012-10-29	WilcoxCV	Wilcoxon-based variable selection in cross-validation
2012-10-29	wild1	R Tools for Wildlife Research and Management
2012-10-29	wombsoft	Wombling Computation
2012-10-29	write.snns	Function for exporting data to SNNS pattern files
2012-10-29	wSVM	Weighted SVM with boosting algorithm for improving accuracy
2012-10-29	yacca	Yet Another Canonical Correlation Analysis Package
2012-10-29	YjdnJlp	Text Analysis by Yahoo! Japan Develper Network
2012-10-29	zyp	Zhang + Yue-Pilon trends package
2012-10-27	conics	Plot Conics
2012-10-27	idr	Irreproducible discovery rate
2012-10-27	metaLik	Likelihood inference in meta-analysis and meta-regression models
2012-10-27	nlmeODE	Non-linear mixed-effects modelling in nlme using differential equations
2012-10-26	demography	Forecasting mortality, fertility, migration and population data
2012-10-26	joineR	Joint modelling of repeated measurements and time-to-event data
2012-10-25	locpol	Kernel local polynomial regression
2012-10-24	bursts	Markov model for bursty behavior in streams
2012-10-24	CARE1	Statistical package for population size estimation in capture-recapture models
2012-10-24	dpglasso	Primal Graphical Lasso
2012-10-24	GLDEX	Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Various Methods
2012-10-24	RHRV	Heart rate variability analysis of ECG data
2012-10-24	Synth	Synthetic Control Group Method for Comparative Case Studies
2012-10-23	antitrust	Antitrust Library
2012-10-23	hwriterPlus	hwriterPlus: Extending the hwriter Package
2012-10-23	lmSupport	Support for Linear Models
2012-10-23	pheno	Auxiliary functions for phenological data analysis
2012-10-23	psychotools	Infrastructure for Psychometric Modeling
2012-10-23	psychotree	Recursive Partitioning Based on Psychometric Models
2012-10-23	rainbow	Rainbow plots, bagplots and boxplots for functional data
2012-10-23	RGtk2Extras	Data frame editor and dialog making wrapper for RGtk2
2012-10-22	detrendeR	Start the detrendeR Graphical User Interface (GUI)
2012-10-22	gsubfn	Utilities for strings and function arguments
2012-10-22	Lambda4	Estimation techniques for the reliability estimate: Maximized Lambda4
2012-10-22	landsat	Radiometric and topographic correction of satellite imagery
2012-10-22	nopp	Nash Optimal Party Positions
2012-10-22	ZeligMultilevel	Multilevel Regressions for Zelig
2012-10-21	capme	Covariate Adjusted Precision Matrix Estimation
2012-10-20	MBI	(M)ultiple-site (B)iodiversity (I)ndices Calculator
2012-10-19	DiscreteInverseWeibull	Discrete inverse Weibull distribution
2012-10-19	rcqp	Interface to the Corpus Query Protocol
2012-10-19	SMR	Studentized Midrange Distribution
2012-10-19	TwoCop	Nonparametric test of equality between two copulas
2012-10-18	AOfamilies	Aranda-Ordaz (AO) transformation families
2012-10-18	breakage	SICM pipette tip geometry estimation
2012-10-18	broman	Karl Broman's R code
2012-10-18	gmvalid	Validation of graphical models
2012-10-18	HiPLARM	High Performance Linear Algebra in R
2012-10-18	nontarget	Detecting, combining and filtering isotope, adduct and homologue series relations in high-resolution mass spectrometry (HRMS) data
2012-10-18	ScottKnott	The ScottKnott Clustering Algorithm
2012-10-18	spclust	Selective phenotyping for experimental crosses
2012-10-17	bmk	MCMC diagnostics package
2012-10-17	linprog	Linear Programming / Optimization
2012-10-17	MLDS	Maximum Likelihood Difference Scaling
2012-10-17	oposSOM	Package for analysis and visualization of metagenes
2012-10-17	xpose4	Xpose 4
2012-10-17	xpose4classic	Xpose 4 Classic Menu System
2012-10-17	xpose4data	Xpose 4 Data Functions Package
2012-10-17	xpose4generic	Xpose 4 Generic Functions Package
2012-10-17	xpose4specific	Xpose 4 Specific Functions Package
2012-10-17	ZeligGAM	Genereal Additive Models for Zelig
2012-10-16	PhaseType	Inference for Phase-type Distributions
2012-10-16	polysat	Tools for Polyploid Microsatellite Analysis
2012-10-16	randomForest	Breiman and Cutler's random forests for classification and regression
2012-10-16	wle	Weighted Likelihood Estimation
2012-10-15	imguR	Share plots using the imgur.com image hosting service
2012-10-15	lineup	Lining up two sets of measurements
2012-10-15	logcondens	Estimate a Log-Concave Probability Density from iid Observations
2012-10-15	modeest	Mode Estimation
2012-10-15	npde	Normalised prediction distribution errors for nonlinear mixed-effect models
2012-10-15	orcutt	Estimate procedure in case of first order autocorrelation
2012-10-15	rentrez	Entrez in R
2012-10-15	Ridit	Ridit Analysis (An extension of the Kruskal-Wallis Test.)
2012-10-14	enaR	Tools ecological network analysis (ena)
2012-10-14	lda	Collapsed Gibbs sampling methods for topic models
2012-10-14	numDeriv	Accurate Numerical Derivatives
2012-10-14	rebird	Interface to eBird
2012-10-13	blme	Bayesian Linear Mixed-Effects models
2012-10-13	PwrGSD	Power in a Group Sequential Design
2012-10-13	REPPlab	R interface to EPP-lab, a Java program for exploratory projection pursuit
2012-10-12	censReg	Censored Regression (Tobit) Models
2012-10-12	ChemometricsWithR	Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences
2012-10-12	ChemometricsWithRData	Data for package ChemometricsWithR
2012-10-12	NCBI2R	NCBI2R-An R package to navigate and annotate genes and SNPs
2012-10-12	protiq	Protein (identification and) quantification based on peptide evidence
2012-10-12	QuACN	QuACN: Quantitative Analysis of Complex Networks
2012-10-12	rChoiceDialogs	rChoiceDialogs collection
2012-10-12	spsurvey	Spatial Survey Design and Analysis
2012-10-12	ZeligChoice	Zelig Choice Models
2012-10-11	AutoSEARCH	General-to-Specific (GETS) Model Selection
2012-10-11	FlexParamCurve	Tools to Fit Flexible Parametric Curves
2012-10-11	httr	Tools for working with URLs and HTTP
2012-10-11	MAVTgsa	Ordinary least square test and Multivariate Analysis Of Variance test with n contrasts
2012-10-11	powerpkg	Power analyses for the affected sib pair and the TDT design
2012-10-10	gamlss.add	GAMLSS Additive
2012-10-10	gamlss.util	GAMLSS Utilities
2012-10-10	PoissonSeq	Significance analysis of sequencing data based on a Poisson log linear model
2012-10-10	SpatioTemporal	Spatio-Temporal Model Estimation
2012-10-09	GOSim	Computation of functional similarities between GO terms and gene products; GO enrichment analysis
2012-10-09	gWidgets	gWidgets API for building toolkit-independent, interactive GUIs
2012-10-08	Ckmeans.1d.dp	Optimal distance-based clustering for one-dimensional data
2012-10-08	coalescentMCMC	MCMC Algorithms for the Coalescent
2012-10-08	DiagTest3Grp	Diagnostic test summary measures for three ordinal groups
2012-10-08	expoRkit	Expokit in R
2012-10-08	TukeyC	Conventional Tukey Test
2012-10-06	extRemes	Extreme value toolkit
2012-10-06	logcondiscr	Estimate a Log-Concave Probability Mass function from Discrete i.i.d. Observations
2012-10-05	CompLognormal	Functions for actuarial scientists
2012-10-05	epoc	EPoC (Endogenous Perturbation analysis of Cancer)
2012-10-05	ggm	A package for Graphical Markov Models
2012-10-05	r2stl	r2stl, R package for visualizing data using a 3D printer
2012-10-05	rgam	Robust Generalized Additive Model
2012-10-05	Rivivc	In vitro in vivo correlation linear level A
2012-10-05	Rmisc	Rmisc: Ryan Miscellaneous
2012-10-05	rworldmap	Mapping global data, vector and raster
2012-10-04	fastSOM	Fast Calculation of Spillover Measures
2012-10-04	FRCC	Fast Regularized Canonical Correlation Analysis
2012-10-04	freeknotsplines	Free-Knot Splines
2012-10-04	RProtoBuf	R Interface to the Protocol Buffers API
2012-10-04	rrBlupMethod6	Re-parametrization of RR-BLUP to allow for a fixed residual variance
2012-10-04	TSdata	TSdbi Illustration
2012-10-03	CopyDetect	An R Package for Computing Statistical Indices to Detect Answer Copying on Multiple-Choice Tests
2012-10-03	isocir	Isotonic Inference for Circular data
2012-10-03	RPPanalyzer	Reads, annotates, and normalizes reverse phase protein array data
2012-10-03	rworldxtra	Country boundaries at high resolution
2012-10-02	CONORData	CONORData
2012-10-02	gnm	Generalized Nonlinear Models
2012-10-02	NeatMap	Non-clustered heatmap alternatives
2012-10-02	TSMySQL	TSdbi extensions for MySQL
2012-10-02	verification	Forecast verification utilities
2012-10-01	biasbetareg	Bias correction of the parameter estimates of the beta regression model
2012-10-01	gbRd	Utilities for processing Rd objects and files
2012-10-01	loop	loop decomposition of weighted directed graphs for life cycle analysis, providing flexbile network plotting methods, and analyzing food chain properties in ecology
2012-10-01	mem	Moving Epidemics Method R Package
2012-10-01	TSfame	TSdbi extensions for fame
2012-10-01	TSgetSymbol	TSdbi extension to connect with getSymbols
2012-10-01	TShistQuote	TSdbi extensions for get.hist.quote
2012-10-01	TSodbc	TSdbi extensions for ODBC
2012-10-01	TSPostgreSQL	TSdbi extensions for PostgreSQL
2012-10-01	TSSQLite	TSdbi extensions for SQLite
2012-10-01	TSxls	TSdbi extension to connect to spreadsheets
2012-10-01	TSzip	TSdbi extension to connect to zip files
2012-09-30	epitools	Epidemiology Tools
2012-09-29	astroFns	Astronomy: time and position functions, misc. utilities
2012-09-29	gamlss.data	GAMLSS Data
2012-09-29	gamlss.dist	Distributions to be used for GAMLSS modelling
2012-09-29	IBrokers	R API to Interactive Brokers Trader Workstation
2012-09-29	logmult	Log-multiplicative models, including association models
2012-09-29	trackObjs	Track Objects (last release - package name changed to 'track')
2012-09-29	useful	A collection of handy, useful functions
2012-09-28	GMMBoost	Likelihood-based Boosting for Generalized mixed models
2012-09-28	hierarchicalDS	Functions for performing hierarchical analysis of distance sampling data
2012-09-28	pvar	p-variation
2012-09-28	reccsim	Simulation of Rare Events Case-Control Studies
2012-09-28	ridge	Ridge Regression with automatic selection of the penalty parameter
2012-09-28	rsem	Robust Structural Equation Modeling with Missing Data and Auxiliary Variables
2012-09-27	Brq	Bayesian analysis of quantile regression models
2012-09-27	monmlp	Monotone multi-layer perceptron neural network
2012-09-27	RWeather	R wrapper around the Yahoo! Weather, Google Weather and NOAA APIs
2012-09-27	sparkTable	Sparklines and graphical tables for tex and html
2012-09-26	Barnard	Barnard's Unconditional Test
2012-09-26	ccChooser	Developing a core collections
2012-09-26	directlabels	Direct labels for multicolor plots in lattice or ggplot2
2012-09-26	irtoys	Simple interface to the estimation and plotting of IRT models
2012-09-26	risksetROC	Riskset ROC curve estimation from censored survival data
2012-09-26	rriskBayes	Predefined Bayes models fitted with Markov chain Monte Carlo (MCMC) (related to the 'rrisk' project)
2012-09-26	rriskDistributions	Fitting distributions to given data or known quantiles
2012-09-26	smcure	Fit Semiparametric Mixture Cure Models
2012-09-26	spatgraphs	Graphs for spatial point patterns
2012-09-25	emoa	Evolutionary Multiobjective Optimization Algorithms
2012-09-25	isva	Independent Surrogate Variable Analysis
2012-09-25	lpint	Local polynomial esitmators of intensity function or its derivatives
2012-09-24	fAssets	Rmetrics - Assets Selection and Modelling
2012-09-24	sapa	Spectral Analysis for Physical Applications
2012-09-24	wmtsa	Wavelet Methods for Time Series Analysis
2012-09-23	exactci	Exact P-values and Matching Confidence Intervals for simple Discrete Parametric Cases
2012-09-23	hyperSpec	Interface for hyperspectral data, i.e. spectra + meta info (spatial, time, concentration, ...)
2012-09-22	hapassoc	Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm
2012-09-22	mixexp	Design and analysis of mixture experiments
2012-09-22	mleur	Maximum likelihood unit root test
2012-09-22	NonpModelCheck	Model Checking and Variable Selection in Nonparametric Regression
2012-09-22	profanal	Implements profile analysis described in Davison & Davenport (2002)
2012-09-22	tolerance	Functions for calculating tolerance intervals
2012-09-21	dicionariosIBGE	Dictionaries for reading microdata surveys from IBGE
2012-09-21	mixstock	functions for mixed stock analysis
2012-09-20	binomialcftp	Generates binomial random numbers via the coupling from the past algorithm
2012-09-20	IgorR	Read binary files saved by Igor Pro (including Neuromatic data)
2012-09-20	neuralnet	Training of neural networks
2012-09-20	tframe	Time Frame coding kernel
2012-09-20	tframePlus	Time Frame coding kernel extensions
2012-09-20	upclass	Updated Classification Methods using Unlabelled Data
2012-09-19	ccaPP	(Robust) canonical correlation analysis via projection pursuit
2012-09-19	ClustOfVar	Clustering of variables
2012-09-19	DBKGrad	Discrete Beta Kernel Graduation of mortality data
2012-09-19	epicalc	Epidemiological calculator
2012-09-19	namespace	Provide namespace managment functions not (yet) present in base R
2012-09-19	nparLD	Nonparametric Analysis of Longitudinal Data in Factorial Experiments
2012-09-19	NScluster	Simulation and Estimation of the Neyman-Scott Type Spatial Cluster Models
2012-09-19	planar	Multilayer optics
2012-09-19	rcppbugs	R binding for cppbugs
2012-09-18	AssotesteR	Statistical Tests for Genetic Association Studies
2012-09-18	MitISEM	Mixture of Student t Distributions using Importance Sampling and Expectation Maximization
2012-09-18	msSurv	Nonparametric Estimation for Multistate Models
2012-09-18	rbundler	Rbundler manages an application's dependencies systematically and repeatedly
2012-09-17	bigmemory.sri	A shared resource interface for Bigmemory Project packages
2012-09-17	fArma	ARMA Time Series Modelling
2012-09-17	Giza	Constructing panels of population pyramid plots based on lattice
2012-09-17	ltm	Latent Trait Models under IRT
2012-09-17	synchronicity	Boost mutex functionality for R
2012-09-15	abcdeFBA	ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package
2012-09-15	matrixcalc	Collection of functions for matrix calculations
2012-09-14	ActuDistns	Functions for actuarial scientists
2012-09-14	coxphf	Cox regression with Firth's penalized likelihood
2012-09-14	coxphw	Weighted Cox regression
2012-09-14	cslogistic	Conditionally Specified Logistic Regression
2012-09-14	DiscriMiner	Tools of the Trade for Discriminant Analysis
2012-09-14	DPpackage	Bayesian nonparametric modeling in R
2012-09-14	okmesonet	Retrieve Oklahoma Mesonet climatological data
2012-09-14	ProgGUIinR	support package for "Programming Graphical User Interfaces in R"
2012-09-14	WCQ	Detection of QTL effects in a small mapping population
2012-09-13	JavaGD	Java Graphics Device
2012-09-13	magnets	Simulate micro-magnets dynamics
2012-09-13	meboot	Maximum Entropy Bootstrap for Time Series
2012-09-13	robfilter	Robust Time Series Filters
2012-09-13	spcov	Sparse Estimation of a Covariance Matrix
2012-09-13	subselect	Selecting variable subsets
2012-09-12	e1071	Misc Functions of the Department of Statistics (e1071), TU Wien
2012-09-12	geneSignatureFinder	A Gene-signatures finder tools
2012-09-12	munsell	Munsell colour system
2012-09-12	ordinal	Regression Models for Ordinal Data
2012-09-12	osmar	OpenStreetMap and R
2012-09-12	rdyncall	Improved Foreign Function Interface (FFI) and Dynamic Bindings to C Libraries (e.g. OpenGL)
2012-09-12	RobLox	Optimally robust influence curves and estimators for location and scale
2012-09-12	RobLoxBioC	Infinitesimally robust estimators for preprocessing omics data
2012-09-12	Sleuth2	Data sets from Ramsey and Schafer's "Statistical Sleuth (2nd ed)"
2012-09-11	BayesNI	BayesNI: Bayesian Testing Procedure for Noninferiority with Binary Endpoints
2012-09-11	CePa	Centrality-based pathway enrichment
2012-09-11	DeducerText	Deducer GUI for Text Data
2012-09-11	eigendog	EigenDog
2012-09-11	ggsubplot	Explore complex data by embedding subplots within plots
2012-09-11	lazyWeave	LaTeX Wrappers for R Users
2012-09-11	rlandscape	Generates random landscapes with specifiable spatial characteristics
2012-09-11	SuperLearner	Super Learner Prediction
2012-09-10	clhs	Conditioned Latin Hypercube Sampling
2012-09-10	evdbayes	Bayesian Analysis in Extreme Value Theory
2012-09-10	hmeasure	The H-measure and other scalar classification performance metrics
2012-09-10	paran	Horn's Test of Principal Components/Factors
2012-09-10	pROC	display and analyze ROC curves
2012-09-10	Runuran	R interface to the UNU.RAN random variate generators
2012-09-09	ggparallel	Variations of Parallel Coordinate Plots for Categorical Data
2012-09-08	AdMit	Adaptive Mixture of Student-t distributions
2012-09-07	Geneland	Detection of structure from multilocus genetic data
2012-09-06	DirichletReg	Dirichlet Regression in R
2012-09-06	FMStable	Finite Moment Stable Distributions
2012-09-06	gcmr	Gaussian Copula Marginal Regression
2012-09-06	NISTnls	Nonlinear least squares examples from NIST
2012-09-06	pi0	Estimating the proportion of true null hypotheses for FDR
2012-09-06	synbreedData	Data for the synbreed package
2012-09-05	BMS	Bayesian Model Averaging Library
2012-09-05	chords	Estimation in respondent driven samples
2012-09-05	hbsae	Hierarchical Bayesian Small Area Estimation
2012-09-05	mi	Missing Data Imputation and Model Checking
2012-09-05	SeqGrapheR	Simple GUI for graph based visualization of cluster of DNA sequence reads
2012-09-04	commandr	Command pattern in R
2012-09-04	dclone	Data Cloning and MCMC Tools for Maximum Likelihood Methods
2012-09-04	expm	Matrix exponential
2012-09-04	granovaGG	Graphical Analysis of Variance Using ggplot2
2012-09-04	ipdmeta	Tools for subgroup analyses with multiple trial data using aggregate statistics
2012-09-04	miniGUI	tktcl quick and simple function GUI
2012-09-04	mlPhaser	Multi-Locus Haplotype Phasing
2012-09-04	mosaic	Project MOSAIC (mosaic-web.org) statistics and mathematics teaching utilities
2012-09-04	survAUC	Estimators of prediction accuracy for time-to-event data
2012-09-03	PIPS	Predicted Interval Plots
2012-09-02	pso	Particle Swarm Optimization
2012-09-01	carcass	Estimation of the number of fatalities from carcass searches
2012-09-01	openintro	OpenIntro data sets and supplemental functions
2012-09-01	sca	Simple Component Analysis
2012-09-01	twoStageGwasPower	Compute thresholds and power for two-stage gwas
2012-08-31	clusteval	Evaluation of Clustering Algorithms
2012-08-31	dplR	Dendrochronology Program Library in R
2012-08-31	GB2	Generalized Beta Distribution of the Second Kind: properties, likelihood, estimation
2012-08-31	kSamples	K-Sample Rank Tests and their Combinations
2012-08-31	NetComp	Network Generation and Comparison
2012-08-31	termstrc	Zero-coupon Yield Curve Estimation
2012-08-31	treethresh	Methods for Tree-based Local Adaptive Thresholding
2012-08-30	evd	Functions for extreme value distributions
2012-08-30	fmt	Variance estimation of FMT method (Fully Moderated t-statistic)
2012-08-30	popReconstruct	Reconstruct population counts, fertility, mortality and migration rates of human populations of the recent past
2012-08-30	rbenchmark	Benchmarking routine for R
2012-08-30	Sejong	KoNLP static dictionaries and Sejong project resources
2012-08-29	cancerTiming	Estimation of temporal ordering of cancer abnormalities
2012-08-29	MetabolAnalyze	Probabilistic latent variable models for metabolomic data
2012-08-29	muRL	Mailmerge using R, LaTeX, and the Web
2012-08-29	qmrparser	Parser combinator in R
2012-08-29	tightClust	Tight Clustering
2012-08-28	bayesGDS	Functions to implement Generalized Direct Sampling
2012-08-28	DALY	DALY Calculator - A GUI for stochastic DALY calculation in R
2012-08-28	logitnorm	Functions for the logitnormal distribution
2012-08-28	playwith	A GUI for interactive plots using GTK+
2012-08-28	smart	Sparse Multivariate Analysis via Rank Transformation
2012-08-27	plsRbeta	Partial least squares Regression for beta regression models
2012-08-27	timeordered	Time-ordered and time-aggregated network analyses
2012-08-25	dna	Differential Network Analysis
2012-08-25	ExomeCNV	Detect CNV and LOH from Exome Sequencing Data
2012-08-25	prabclus	Functions for clustering of presence-absence, abundance and multilocus genetic data
2012-08-25	PVAClone	Population Viability Analysis with Data Cloning
2012-08-24	brglm	Bias reduction in binomial-response GLMs
2012-08-24	grofit	The package was developed to fit fit many growth curves obtained under different conditions
2012-08-24	regtest	Regression testing
2012-08-24	Renext	Renewal method for extreme values extrapolation
2012-08-24	rindex	Indexing for R
2012-08-24	SearchTrees	Spatial Search Trees
2012-08-24	seem	Simulation of Ecological and Environmental Models
2012-08-24	STARSEQ	Secondary Trait Association analysis for Rare variants via SEQuence data
2012-08-23	epr	Easy polynomial regression
2012-08-23	gaussDiff	Difference measures for multivariate Gaussian probability density functions
2012-08-23	kza	Kolmogorov-Zurbenko Adaptive Filters
2012-08-23	latticeExtra	Extra Graphical Utilities Based on Lattice
2012-08-23	muStat	Prentice Rank Sum Test and McNemar Test
2012-08-23	PTAk	Principal Tensor Analysis on k modes
2012-08-23	seq2R	Simple method to detect compositional changes in genomic sequences
2012-08-23	Simpsons	Detecting Simpson's Paradox
2012-08-23	smoothmest	Smoothed M-estimators for 1-dimensional location
2012-08-23	tmg	Truncated Multivariate Gaussian Sampling
2012-08-22	acer	The ACER Method for Extreme Value Estimation
2012-08-22	bootruin	A bootstrap test for the probability of ruin in the classical risk process
2012-08-22	BTYD	Implementing Buy 'Til You Die Models
2012-08-22	LifeTables	A package to implement HMD model life table system
2012-08-22	Rlab	Functions and Datasets Required for ST370 class
2012-08-22	samplesize	Sample size calculation for various t-Tests and Wilcoxon-Test
2012-08-22	sitools	Format a number to a string with SI prefix
2012-08-22	TSP	Traveling Salesperson Problem (TSP)
2012-08-22	VPdtw	Variable Penalty Dynamic Time Warping
2012-08-21	BigTSP	Top Scoring Pair based methods for classification
2012-08-21	boss	Boosted One-Step Statistics: Fast and accurate approximations for GLM, GEE and Mixed models for use in GWAS
2012-08-21	flashClust	Implementation of optimal hierarchical clustering
2012-08-21	labstatR	Libreria del Laboratorio di Statistica con R
2012-08-21	MatrixEQTL	Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
2012-08-20	quantchem	Quantitative chemical analysis: calibration and evaluation of results
2012-08-19	cudia	CUDIA Cross-level Imputation
2012-08-19	cxxfunplus	extend cxxfunction by saving the dynamic shared objects
2012-08-19	ddst	Data driven smooth test
2012-08-19	genlasso	Path algorithm for generalized lasso problems
2012-08-19	MATTOOLS	Modern Calibration Functions for the Modern Analog Technique (MAT)
2012-08-19	MSG	Data and functions for the book Modern Statistical Graphics
2012-08-19	RPCLR	RPCLR (Random-Penalized Conditional Logistic Regression)
2012-08-18	CommonTrend	Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics
2012-08-18	conjoint	Conjoint analysis package
2012-08-18	RGtk2	R bindings for Gtk 2.8.0 and above
2012-08-17	arrayhelpers	Convenience functions for arrays
2012-08-17	DAKS	Data Analysis and Knowledge Spaces
2012-08-17	fechner	Fechnerian Scaling of Discrete Object Sets
2012-08-17	ModelMap	Creates Random Forest and Stochastic Gradient Boosting Models, and applies them to GIS .img files to build detailed prediction maps
2012-08-17	pencopula	Flexible Copula Density Estimation with Penalized Hierarchical B-Splines
2012-08-17	PF	Functions related to prevented fraction
2012-08-17	PresenceAbsence	Presence-Absence Model Evaluation
2012-08-17	SAScii	Import ASCII files directly into R using only a SAS input script
2012-08-17	weights	Weighting and Weighted Statistics
2012-08-16	capwire	Estimates population size from non-invasive sampling
2012-08-16	cplm	Compound Poisson linear models
2012-08-16	huge	High-dimensional Undirected Graph Estimation
2012-08-16	lava.tobit	LVM with censored and binary outcomes
2012-08-15	treelet	Treelets - an adaptive multi-scale basis for high-dimensional, sparse and unordered data
2012-08-14	aspace	A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns
2012-08-14	binGroup	Evaluation and experimental design for binomial group testing
2012-08-14	Interact	Tests for marginal interactions in a 2 class response model
2012-08-14	mmand	Mathematical Morphology in Any Number of Dimensions
2012-08-14	MSBVAR	Markov-Switching, Bayesian, Vector Autoregression Models
2012-08-14	rHpcc	Interface between HPCC and R
2012-08-14	sampleSelection	Sample Selection Models
2012-08-13	depth	Depth functions tools for multivariate analysis
2012-08-13	diptest	Hartigan's dip test statistic for unimodality - corrected code
2012-08-13	kerdiest	Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions
2012-08-13	SQN	subset quantile normalization
2012-08-13	TauP.R	Earthquake Traveltime Calculations for 1-D Earth Models
2012-08-13	texmex	Threshold exceedences and multivariate extremes
2012-08-11	boostSeq	Optimized GWAS cohort subset selection for resequencing studies
2012-08-11	EDanalysis	A R Package For Gene Enrichment Disequilibrium Analysis
2012-08-11	ez	Easy analysis and visualization of factorial experiments
2012-08-11	PLIS	Multiplicity control using Pooled LIS statistic
2012-08-11	TSEN	Two-dimensional peak sentinel tool for GC x GC-HRTOFMS
2012-08-10	asympTest	Asymptotic statistic
2012-08-10	IC2	Inequality and Concentration Indices and Curves
2012-08-10	KrigInv	Kriging-based Inversion for Deterministic and Noisy Computer Experiments
2012-08-10	MetaDE	MetaDE: Microarray meta-analysis for differentially expressed gene detection
2012-08-10	msir	Model-based Sliced Inverse Regression
2012-08-10	obliqueRF	Oblique Random Forests from Recursive Linear Model Splits
2012-08-10	SAFD	Statistical Analysis of Fuzzy Data
2012-08-09	bvenn	A Simple alternative to proportional Venn diagrams
2012-08-09	BVS	Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies
2012-08-09	dlmap	Detection Localization Mapping for QTL
2012-08-09	FormalSeries	Elementary arithemtic in formal series rings
2012-08-09	GPfit	Gaussian Process Modeling
2012-08-09	gridExtra	functions in Grid graphics
2012-08-09	modelfree	Model-free estimation of a psychometric function
2012-08-09	p2distance	Welfare's Synthetic Indicator
2012-08-09	ref	References for R
2012-08-09	sharx	Models and Data Sets for the Study of Species-Area Relationships
2012-08-09	textir	Inverse Regression for Text Analysis
2012-08-08	AquaEnv	AquaEnv - an integrated development toolbox for aquatic chemical model generation
2012-08-08	CGP	Composite Gaussian process models
2012-08-08	deltaPlotR	Identification of dichotomous differential item functioning (DIF) using Angoff's Delta Plot method
2012-08-08	ecolMod	"A practical guide to ecological modelling - using R as a simulation platform"
2012-08-08	fugeR	FUzzy GEnetic, a machine learning algorithm to construct prediction model based on fuzzy logic
2012-08-08	Johnson	Johnson Transformation
2012-08-08	RcppBDT	Rcpp bindings for the Boost Date_Time library
2012-08-08	shape	Functions for plotting graphical shapes, colors
2012-08-08	sparr	The sparr package: SPAtial Relative Risk
2012-08-07	ds	Descriptive Statistics
2012-08-07	semGOF	Goodness-of-fit indexes for structural equation models
2012-08-07	weathermetrics	Functions to convert between weather metrics
2012-08-06	mcmcse	Monte Carlo Standard Errors for MCMC
2012-08-06	notifyR	Send push notifications to your smartphone via pushover.net (ACCOUNT REQUIRED!)
2012-08-06	survSNP	Power and Sample Size Calculations for SNP Association Studies with Censored Time to Event Outcomes
2012-08-05	CoClust	Copula based cluster analysis
2012-08-05	deamer	Deconvolution density estimation with adaptive methods for a variable prone to measurement error
2012-08-05	proj4	A simple interface to the PROJ.4 cartographic projections library
2012-08-05	RMendeley	Interface to Mendeley API methods
2012-08-05	season	Seasonal analysis of health data
2012-08-05	ttime	Translate Neurodevelopmental Event Timing Across Species
2012-08-04	dgof	Discrete Goodness-of-Fit Tests
2012-08-04	fastcox	Lasso and elastic-net penalized Cox's regression in high dimensions models using the cocktail algorithm
2012-08-04	R2PPT	Simple R Interface to Microsoft PowerPoint using rcom or RDCOMClient
2012-08-04	taRifx.geo	Collection of various spatial functions
2012-08-03	BNPdensity	Ferguson-Klass type algorithm for posterior normalized random measures
2012-08-03	crblocks	Categorical Randomized Block Data Analysis
2012-08-03	mvc	Multi-View Clustering
2012-08-03	rAverage	Parameter estimation for the averaging model of Information Integration Theory
2012-08-03	sdcTable	Methods for SDC (statistical disclosure control) in tabular data
2012-08-03	spuRs	Functions and Datasets for "Introduction to Scientific Programming and Simulation Using R"
2012-08-02	coexist	Species coexistence modeling and analysis
2012-08-02	crn	Downloads and Builds datasets for Climate Reference Network
2012-08-02	Metadata	Collates Metadata for Climate Surface Stations
2012-08-02	sspir	State Space Models in R
2012-08-02	truncnorm	Truncated normal distribution
2012-08-01	bbmle	Tools for general maximum likelihood estimation
2012-08-01	blockTools	Block, assign, and diagnose potential interference in randomized experiments
2012-08-01	COUNT	Functions, data and code for count data
2012-08-01	hisemi	Hierarchical Semiparametric Regression of Test Statistics
2012-08-01	hypred	Simulation of genomic data in applied genetics
2012-08-01	LEAPFrOG	Likelihood Estimation of Admixture in Parents From Offspring Genotypes
2012-08-01	LearnEDA	Functions for Learning Exploratory Data Analysis
2012-08-01	Peak2Trough	Estimation of the peak-to-trough ratio of a seasonal variation component
2012-08-01	Runiversal	Runiversal - Package for converting R objects to Java variables and XML
2012-08-01	sBF	Smooth Backfitting
2012-08-01	TSAgg	Time series Aggregation
2012-08-01	visualizationTools	Package contains a few functions to visualize statistical circumstances
2012-07-31	catdata	Categorical Data
2012-07-31	fast	Implementation of the Fourier Amplitude Sensitivity Test (FAST)
2012-07-31	gumbel	Gumbel copula
2012-07-31	RcppCNPy	Rcpp bindings for NumPy files
2012-07-31	rtape	Manage and manipulate large collections of R objects stored as tape-like files
2012-07-31	zic	Bayesian Inference for Zero-Inflated Count Models
2012-07-30	EstCRM	Calibrating Parameters for the Samejima's Continuous IRT Model
2012-07-30	HyPhy	Macroevolutionary phylogentic analysis of species trees and gene trees
2012-07-30	rJython	R interface to Python via Jython
2012-07-30	RSEIS	Seismic Time Series Analysis Tools
2012-07-29	npmv	Nonparametric Comparison of Multivariate Samples
2012-07-29	poisson.glm.mix	Fit high dimensional mixtures of Poisson GLM's
2012-07-29	psyphy	Functions for analyzing psychophysical data in R
2012-07-29	R2jags	A Package for Running jags from R
2012-07-28	BaylorEdPsych	R Package for Baylor University Educational Psychology Quantitative Courses
2012-07-28	gogarch	Generalized Orthogonal GARCH (GO-GARCH) models
2012-07-28	sos	sos
2012-07-27	OneHandClapping	Prediction of condition-specific transcription factor interactions
2012-07-27	PredictABEL	Assessment of risk prediction models
2012-07-27	VisCov	Visualizing of distributions of covariance matrices
2012-07-26	evir	Extreme Values in R
2012-07-26	iRegression	Regression methods for interval-valued variables
2012-07-26	mbmdr	Model Based Multifactor Dimensionality Reduction
2012-07-26	parcor	Regularized estimation of partial correlation matrices
2012-07-26	PlayerRatings	Dynamic Updating Methods For Player Ratings Estimation
2012-07-26	QRM	Provides R-language code to examine Quantitative Risk Management concepts
2012-07-26	rneos	rneos: XML-RPC Interface to NEOS
2012-07-26	SQUAREM	Squared extrapolation methods for accelerating fixed-point iterations
2012-07-26	yhat	Interpreting Regression Effects
2012-07-25	dpmixsim	Dirichlet Process Mixture model simulation for clustering and image segmentation
2012-07-25	fdrtool	Estimation of (Local) False Discovery Rates and Higher Criticism
2012-07-25	SoilR	Models of Soil Organic Matter Decomposition
2012-07-25	txtplot	Text based plots
2012-07-24	desire	Desirability functions
2012-07-24	mcr	Method Comparison Regression
2012-07-24	plgp	Particle Learning of Gaussian Processes
2012-07-24	relSim	Relative Simulator
2012-07-23	backtest	Exploring portfolio-based conjectures about financial instruments
2012-07-23	binhf	Haar-Fisz functions for binomial data
2012-07-23	c3net	Infering large-scale gene networks with C3NET
2012-07-23	cggd	Continuous Generalized Gradient Descent
2012-07-23	COSINE	COndition SpecIfic sub-NEtwork
2012-07-23	datamerge	Merging of overlapping and inconsistent data
2012-07-23	drawExpression	Visualising R syntax through graphics
2012-07-23	FindAllRoots	Find all root(s) of the equation and Find root(s) of the equation by dichotomy
2012-07-23	FinTS	Companion to Tsay (2005) Analysis of Financial Time Series
2012-07-23	FunCluster	Functional Profiling of Microarray Expression Data
2012-07-23	geneListPie	Profiling a gene list into GOslim or KEGG function pie
2012-07-23	GExMap	A visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data
2012-07-23	glmnetcr	Fit a penalized constrained continuation ratio model for predicting an ordinal response
2012-07-23	glmpathcr	Fit a penalized continuation ratio model for predicting an ordinal response
2012-07-23	GOFSN	Goodness-of-fit tests for the family of skew-normal models
2012-07-23	LogicForest	Logic Forest
2012-07-23	mcclust	Process an MCMC Sample of Clusterings
2012-07-23	MeDiChI	MeDiChI ChIP-chip deconvolution library
2012-07-23	MLDA	Methylation Linear Discriminant Analysis (MLDA)
2012-07-23	NetworkAnalysis	Statistical inference on populations of weighted or unweighted networks
2012-07-23	nullabor	Tools for graphical inference
2012-07-23	ODB	Open Document Databases (.odb) management
2012-07-23	parmigene	Parallel Mutual Information estimation for Gene Network reconstruction
2012-07-23	portfolio	Analysing equity portfolios
2012-07-23	portfolioSim	Framework for simulating equity portfolio strategies
2012-07-23	RcppGSL	Rcpp integration for GNU GSL vectors and matrices
2012-07-23	schoolmath	Functions and datasets for math used in school
2012-07-23	spa	Implements The Sequential Predictions Algorithm
2012-07-23	vmv	Visualization of Missing Values
2012-07-23	vwr	Useful functions for visual word recognition research
2012-07-22	GhcnDaily	Downloads and processes GHCN daily
2012-07-22	rmmseg4j	R interface to the Java Chinese word segmentation system of mmseg4j
2012-07-22	skewtools	Information Tools for analyze Skew-Elliptical distributions and related models
2012-07-22	TIMP	a problem solving environment for fitting separable nonlinear models in physics and chemistry applications
2012-07-20	FRACTION	Numeric number into fraction
2012-07-20	gamm4	Generalized additive mixed models using mgcv and lme4
2012-07-20	obliclus	Cluster-based factor rotation
2012-07-20	oro.pet	Rigorous - Positron Emission Tomography
2012-07-19	dataview	Human readable data presentation
2012-07-19	RNetCDF	R Interface to NetCDF Datasets
2012-07-19	xtermStyle	Basic text formatting using xterm escape sequences
2012-07-18	cncaGUI	Canonical Non-symmetrical Correspondence Analysis in R
2012-07-18	CpGassoc	Association between Methylation and a phenotype of interest
2012-07-18	elmNN	Implementation of ELM (Extreme Learning Machine ) algorithm for SLFN ( Single Hidden Layer Feedforward Neural Networks )
2012-07-18	mhurdle	Estimation of models with limited dependent variables
2012-07-18	R2admb	ADMB to R interface functions
2012-07-17	bspmma	bspmma: Bayesian Semiparametric Models for Meta-Analysis
2012-07-17	frontiles	Partial frontier efficiency analysis
2012-07-17	gppois	Gaussian Processes for Poisson-noised Data
2012-07-16	astsa	Applied Statistical Time Series Analysis
2012-07-16	doRedis	Foreach parallel adapter for the rredis package
2012-07-16	EDISON	Software for network reconstruction and changepoint detection
2012-07-16	irr	Various Coefficients of Interrater Reliability and Agreement
2012-07-16	rredis	Redis client for R
2012-07-15	R2SWF	Convert R Graphics to Flash Animations
2012-07-13	crmn	CCMN and other noRMalizatioN methods for metabolomics data
2012-07-13	knnGarden	Multi-distance based k-Nearest Neighbors
2012-07-13	lhs	Latin Hypercube Samples
2012-07-12	CensRegMod	Fitting Normal and Student-t censored regression model
2012-07-12	dlmodeler	Generalized Dynamic Linear Modeler
2012-07-12	eVenn	eVenn: A powerful tool to compare lists and draw Venn diagrams
2012-07-12	GUTS	GUTS: Fast Calculation of the Likelihood of a Stochastic Survival Model
2012-07-12	rggobi	Interface between R and GGobi
2012-07-12	UScensus2010	US Census 2010 Suite of R Packages
2012-07-11	DeducerSurvival	Add Survival Dialogue to Deducer
2012-07-11	HW.pval	Testing Hardy-Weinberg Equilibrium for Multiallelic Genes
2012-07-11	hypothesestest	Confidence Intervals and Tests of Statistical Hypotheses
2012-07-11	msr	Morse-Smale approximation, regression and visualization
2012-07-10	flexclust	Flexible Cluster Algorithms
2012-07-10	mlbench	Machine Learning Benchmark Problems
2012-07-10	MortalitySmooth	Smoothing and forecasting Poisson counts with P-splines
2012-07-10	mvtmeta	Multivariate meta-analysis
2012-07-10	xgrid	Access Apple Xgrid using R
2012-07-09	complex.surv.dat.sim	Simulation of complex survival data
2012-07-09	EBS	Exact Bayesian Segmentation
2012-07-09	extraBinomial	Extra-binomial approach for pooled sequencing data
2012-07-09	GrassmannOptim	Grassmann Manifold Optimization
2012-07-09	HumMeth27QCReport	HumMeth27QCReport: quality control and preprocessing of Illumina's Infinium methylation assays
2012-07-09	KFAS	Kalman Filter and Smoother for Exponential Family State Space Models
2012-07-09	SECP	Statistical Estimation of Cluster Parameters (SECP)
2012-07-08	HiDimDA	High Dimensional Discriminant Analysis
2012-07-08	iSubpathwayMiner	The package can implement the graph-based reconstruction and analyses of the KEGG pathways
2012-07-07	CPE	Concordance Probability Estimates in Survival Analysis
2012-07-07	dcmle	Hierarchical Models Made Easy with Data Cloning
2012-07-07	mefa4	Multivariate Data Handling with S4 Classes and Sparse Matrices
2012-07-07	pbapply	Adding Progress Bar to '*apply' Functions
2012-07-07	RaschSampler	Rasch Sampler
2012-07-06	GPvam	Maximum Likelihood Estimation of the Multiple Membership Mixed Models Used in Value-Added Modeling
2012-07-06	NLRoot	searching for the root of equation
2012-07-06	pcaL1	Three L1-Norm PCA Methods
2012-07-06	robustfa	An Object Oriented Framework for Robust Factor Analysis
2012-07-06	WMDB	Discriminant Analysis Methods by Weight Mahalanobis Distance and bayes
2012-07-05	adabag	Applies multiclass AdaBoost.M1, AdaBoost-SAMME and Bagging
2012-07-05	geoR	Analysis of geostatistical data
2012-07-05	Mobilize	Mobilize plots and functions
2012-07-05	ncg	Computes the noncentral gamma function
2012-07-05	Ohmage	R Client for Mobilize/Andwellness server
2012-07-05	R.rsp	Dynamic generation of scientific reports
2012-07-04	easi	EASI Demand System Estimation
2012-07-04	faisalconjoint	Faisal Conjoint Model: A New Approach to Conjoint Analysis
2012-07-04	p3state.msm	Analyzing survival data
2012-07-04	SAPP	Statistical Analysis of Point Processes
2012-07-04	teigen	teigen: Model-based clustering and classification with the multivariate t-distribution
2012-07-03	aroma.apd	A probe-level data file format used by aroma.affymetrix [DEPRECATED]
2012-07-03	GISTools	Some further GIS capabilities for R
2012-07-03	myepisodes	MyEpisodes RSS/API functions
2012-07-03	R.huge	Methods for accessing huge amounts of data [DEPRECATED]
2012-07-02	CR	Power Calculation for Weighted Log-Rank Tests in Cure Rate Models
2012-07-02	kaps	K Adaptive Partitioning for Survival data
2012-07-02	rCUR	CUR decomposition package
2012-07-02	rda	Shrunken Centroids Regularized Discriminant Analysis
2012-07-01	RankAggreg	Weighted rank aggregation
2012-06-30	kinfit	Routines for fitting kinetic models to chemical degradation data
2012-06-29	packS4	Toy example of S4 package
2012-06-28	elasticnet	Elastic-Net for Sparse Estimation and Sparse PCA
2012-06-28	MPCI	Multivariate Process Capability Indices (MPCI)
2012-06-28	MSQC	Multivariate Statistical Quality Control
2012-06-28	RAD	Fit RAD models to biological data
2012-06-28	R.methodsS3	Utility function for defining S3 methods
2012-06-27	DiceView	Plot methods for computer experiments design and surrogate
2012-06-27	mded	Measuring the difference between two empirical distributions
2012-06-27	RODBC	ODBC Database Access
2012-06-27	treebase	An R package for discovery, access and manipulation of online phylogenies
2012-06-26	bmem	Mediation analysis with missing data using bootstrap
2012-06-26	FacPad	Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment
2012-06-26	missForest	Nonparametric Missing Value Imputation using Random Forest
2012-06-26	x12	X12 - wrapper function and structure for batch processing
2012-06-26	x12GUI	X12 - Graphical User Interface
2012-06-25	ada	ada: an R package for stochastic boosting
2012-06-25	ETAS	Modeling earthquake data using Epidemic Type Aftershock Sequence model
2012-06-25	gclus	Clustering Graphics
2012-06-25	genoPlotR	Plot publication-grade gene and genome maps
2012-06-25	mapReduce	mapReduce - flexible mapReduce algorithm for parallel computation
2012-06-25	qtlnet	Causal Inference of QTL Networks
2012-06-25	QuasiSeq	QuasiSeq
2012-06-23	harvestr	A Parallel Simulation Framework
2012-06-22	adaptMCMC	Implementation of a generic adaptive Monte Carlo Markov Chain sampler
2012-06-22	caroline	A Collection of Database, Data Structure, Visualization, and Utility Functions for R
2012-06-22	hive	Hadoop InteractiVE
2012-06-22	mra	Analysis of Mark-Recapture data
2012-06-22	PP	Person Parameter estimation
2012-06-22	SRPM	Shared Reproducibility Package Management
2012-06-21	dostats	Compute statistics helper functions
2012-06-21	ezglm	selects significant non-additive interaction between two variables using fast GLM implementation
2012-06-21	jmec	Fit joint model for event and censoring with cluster-level frailties
2012-06-21	psy	Various procedures used in psychometry
2012-06-21	SimHap	A comprehensive modeling framework for epidemiological outcomes and a simulation-based approach to haplotypic analysis of population-based data
2012-06-20	batchmeans	Consistent Batch Means Estimation of Monte Carlo Standard Errors
2012-06-20	Metrics	Evaluation metrics for machine learning
2012-06-20	RVideoPoker	Play Video Poker with R
2012-06-20	sperrorest	Spatial Error Estimation and Variable Importance
2012-06-20	sss	Tools for importing files in the triple-s .(Standard Survey Structure) format
2012-06-19	AMAP.Seq	Compare Gene Expressions from 2-Treatment RNA-Seq Experiments
2012-06-19	MMIX	Model selection uncertainty and model mixing
2012-06-19	rtf	Rich Text Format (RTF) Output
2012-06-19	sparseLDA	Sparse Discriminant Analysis
2012-06-19	tourr	Implement tour methods in pure R code
2012-06-19	USPS	Unsupervised and Supervised methods of Propensity Score Adjustment for Bias
2012-06-18	tourrGui	A Tour GUI using gWidgets
2012-06-17	crossmatch	The Cross-match Test
2012-06-15	bisectr	Tools to find bad commits with git bisect
2012-06-15	MLEP	Maximum likelihood estimate of penetrance parameters
2012-06-15	SpatialPack	Package for analysis of spatial data
2012-06-14	colortools	Tools for colors in an HSV color model
2012-06-14	dummies	Create dummy/indicator variables flexibly and efficiently
2012-06-14	sigora	SIGNATURE OVERREPRESENTATION ANALYSIS
2012-06-14	SPACECAP	A Program to Estimate Animal Abundance and Density using Bayesian Spatially-Explicit Capture-Recapture Models
2012-06-13	archetypes	Archetypal Analysis
2012-06-13	clustergas	A hierarchical clustering method based on genetic algorithms
2012-06-13	ISIPTA	ISIPTA network analysis
2012-06-13	pscl	Political Science Computational Laboratory, Stanford University
2012-06-13	Rmixmod	An interface of MIXMOD
2012-06-12	ca	Simple, Multiple and Joint Correspondence Analysis
2012-06-12	eco	R Package for Ecological Inference in 2x2 Tables
2012-06-12	fontcm	Computer Modern font for use with extrafont package
2012-06-12	gnmf	Generalized Non-negative Matrix Factorization
2012-06-12	LogConcDEAD	Log-concave Density Estimation in Arbitrary Dimensions
2012-06-12	paleoTS	Analyze paleontological time-series
2012-06-11	caribou	Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry
2012-06-11	extrafontdb	Package for holding the database for the extrafont package
2012-06-11	HTSCluster	Clustering high throughput sequencing (HTS) data
2012-06-10	hzar	Hybrid Zone Analysis using R
2012-06-10	spls	Sparse Partial Least Squares (SPLS) Regression and Classification
2012-06-09	gWidgetsWWW	Toolkit implementation of the gWidgets API for use with web pages
2012-06-09	opencpu.demo	OpenCPU Demo apps
2012-06-09	rrlda	Robust Regularized Linear Discriminant Analysis
2012-06-09	standGL	Standardized Group Lasso
2012-06-08	CHCN	Canadian Historical Climate Network
2012-06-08	HMPTrees	Statistical Object Oriented Data Analysis of RDP-based Taxonomic trees from Human Microbiome Data: Modeling, Visualization, and Two-Group Comparison
2012-06-08	modelcf	Modeling physical computer codes with functional outputs using clustering and dimensionality reduction
2012-06-07	R330	An R package for Stats 330
2012-06-06	mc2d	Tools for Two-Dimensional Monte-Carlo Simulations
2012-06-06	mpMap	Multi-parent RIL genetic analysis
2012-06-05	BerkeleyEarth	Data Input for Berkeley Earth Surface Temperature
2012-06-05	bios2mds	From BIOlogical Sequences to MultiDimensional Scaling
2012-06-05	pdfCluster	Cluster analysis via nonparametric density estimation
2012-06-05	qvcalc	Quasi variances for factor effects in statistical models
2012-06-05	RIFS	Random Iterated Function System (RIFS)
2012-06-04	JMLSD	Joint Modeling of Longitudinal and Survival Data - Power Calculation
2012-06-04	leiv	Bivariate linear errors-in-variables estimation
2012-06-04	MorseGen	Simple raw data generator based on user-specified summary statistics
2012-06-04	RghcnV3	Global Historical Climate Network Version 3
2012-06-04	Voss	Generic Voss algorithm (random sequential additions)
2012-06-03	ParamHelpers	Helpers for parameters in black-optimization, tuning and maching learning
2012-06-03	RcmdrPlugin.EBM	Rcmdr Evidence Based Medicine Plug-In package
2012-06-03	RxCEcolInf	R x C Ecological Inference With Optional Incorporation of Survey Information
2012-06-03	SimpleTable	Bayesian Inference and Sensitivity Analysis for Causal Effects from 2 x 2 and 2 x 2 x K Tables in the Presence of Unmeasured Confounding
2012-06-03	SNSequate	Standard and Nonstandard Statistical Models and Methods for Test Equating
2012-06-02	isdals	Provides datasets for Introduction to Statistical Data Analysis for the Life Sciences
2012-06-02	kulife	Datasets and functions from the Faculty of Life Sciences, University of Copenhagen
2012-06-02	micEcon	Microeconomic Analysis and Modelling
2012-06-01	BAS	Bayesian Model Averaging using Bayesian Adaptive Sampling
2012-06-01	Devore6	Data sets from Devore's "Prob and Stat for Eng (6th ed)"
2012-06-01	hiPOD	hierarchical Pooled Optimal Design
2012-06-01	howmany	A lower bound for the number of correct rejections
2012-06-01	quantregForest	Quantile Regression Forests
2012-06-01	relaxo	Relaxed Lasso
2012-05-31	ebdbNet	Empirical Bayes Estimation of Dynamic Bayesian Networks
2012-05-31	OIdata	Data sets and supplements (OpenIntro)
2012-05-31	Rcapture	Loglinear Models for Capture-Recapture Experiments
2012-05-31	strucchange	Testing, Monitoring, and Dating Structural Changes
2012-05-30	bfp	Bayesian Fractional Polynomials
2012-05-30	dmt	Dependency Modeling Toolkit
2012-05-30	foodweb	visualisation and analysis of food web networks
2012-05-30	intpoint	linear programming solver by the interior point method and graphically (two dimensions)
2012-05-30	mitools	Tools for multiple imputation of missing data
2012-05-30	nortest	Tests for Normality
2012-05-30	rEMM	Extensible Markov Model (EMM) for Data Stream Clustering in R
2012-05-30	scuba	Scuba diving calculations and decompression models
2012-05-29	genomicper	Circular Genomic Permutation using GWAS p-values of association
2012-05-29	longclust	Model-Based Clustering and Classification for Longitudinal Data
2012-05-29	ncf	spatial nonparametric covariance functions
2012-05-28	disp2D	2D Hausdorff and Simplex Dispersion Orderings
2012-05-28	MAMS	Designing Multi-Arm Multi-Stage Studies
2012-05-28	plus	Penalized Linear Unbiased Selection
2012-05-26	multcompView	Visualizations of Paired Comparisons
2012-05-26	OpenCL	Interface allowing R to use OpenCL
2012-05-25	fgof	Fast Goodness-of-fit Test
2012-05-25	Maeswrap	Wrapper functions for MAESTRA/MAESPA
2012-05-25	OptimalCutpoints	Computing optimal cutpoints in diagnostic tests
2012-05-24	BinNor	Simultaneous generation of multivariate binary and normal variates
2012-05-24	dynsurv	Dynamic models for survival data
2012-05-24	WeightedPortTest	Weighted Portmanteau Tests for Time Series Goodness-of-fit
2012-05-23	G1DBN	A package performing Dynamic Bayesian Network inference
2012-05-23	MetaPath	Perform the Meta-Analysis for Pathway Enrichment analysis (MAPE)
2012-05-23	osDesign	Design and analysis of observational studies
2012-05-23	qtutils	Miscellaneous Qt-based utilities
2012-05-22	iterLap	Approximate probability densities by iterated Laplace Approximations
2012-05-21	pdc	Permutation Distribution Clustering
2012-05-21	SparseGrid	Sparse grid integration in R
2012-05-21	Taxonstand	Taxonomic standardization of plant species names
2012-05-20	BayesXsrc	R Package Distribution of the BayesX C++ Sources
2012-05-20	CatDyn	Fishery Stock Assessment by Catch Dynamic Models
2012-05-20	RVowpalWabbit	R interface to the Vowpal Wabbit
2012-05-20	sessionTools	Tools for saving, restoring and teleporting R sessions
2012-05-19	irtrees	Estimation of Tree-Based Item Response Models
2012-05-19	PEIP	Functions for Aster Book on Inverse Theory
2012-05-18	dbstats	Distance-based statistics (dbstats)
2012-05-18	gsmaRt	Gene Set Microarray Testing
2012-05-18	HTMLUtils	Facilitates automated HTML report creation
2012-05-18	makeProject	Creates an empty package framework for the LCFD format
2012-05-17	googlePublicData	An R library to build Google's Public Data Explorer DSPL Metadata files
2012-05-17	msgps	Degrees of freedom of elastic net, adaptive lasso and generalized elastic net
2012-05-17	OrgMassSpecR	Organic Mass Spectrometry
2012-05-17	QUIC	Regularized sparse inverse covariance matrix estimation
2012-05-17	simSummary	Simulation summary
2012-05-16	bayesm	Bayesian Inference for Marketing/Micro-econometrics
2012-05-16	M3	Reading M3 files
2012-05-16	primer	Functions and data for A Primer of Ecology with R
2012-05-15	bayesclust	Tests/Searches for significant clusters in genetic data
2012-05-15	coxme	Mixed Effects Cox Models
2012-05-15	RcppSMC	Rcpp bindings for Sequential Monte Carlo
2012-05-15	ri	ri: R package for performing randomization-based inference for experiments
2012-05-15	timsac	TIMe Series Analysis and Control package
2012-05-14	BradleyTerry2	Bradley-Terry Models
2012-05-14	cumplyr	Extends ddply to allow calculation of cumulative quantities
2012-05-14	cvTools	Cross-validation tools for regression models
2012-05-14	pgnorm	The p-generalized normal distribution
2012-05-14	prefmod	Utilities to fit paired comparison models for preferences
2012-05-14	psychomix	Psychometric Mixture Models
2012-05-13	ProjectTemplate	Automates the creation of new statistical analysis projects
2012-05-13	SortableHTMLTables	Turns a data frame into an HTML file containing a sortable table
2012-05-13	TextRegression	Predict continuous valued outputs associated with text documents
2012-05-12	frailtyHL	Frailty Models via H-likelihood
2012-05-12	minqa	Derivative-free optimization algorithms by quadratic approximation
2012-05-11	dafs	Data analysis for forensic scientists
2012-05-11	DNAtools	Tools for analysing forensic genetic DNA data
2012-05-11	fwsim	Fisher-Wright Population Simulation
2012-05-11	LPCM	Local principal curve methods
2012-05-11	RTDAmeritrade	RTDAmeritrade
2012-05-10	bigml	R bindings for the BigML API
2012-05-10	mfr	Minimal Free Resolutions of Graph Edge Ideals
2012-05-10	rolasized	Solarized colours in R
2012-05-10	spatialsegregation	Segregation measures for multitype spatial point patterns
2012-05-09	Animal	Analyze time-coded animal behavior data
2012-05-09	gammSlice	Generalized additive mixed model analysis via slice sampling
2012-05-09	plmDE	Additive partially linear models for differential gene expression analysis
2012-05-08	AGD	Analysis of Growth Data
2012-05-08	BaSAR	Bayesian Spectrum Analysis in R
2012-05-08	beeswarm	The bee swarm plot, an alternative to stripchart
2012-05-08	iCluster	Integrative clustering of multiple genomic data types
2012-05-08	SunterSampling	Sunter's sampling design
2012-05-07	CityPlot	Visualization of structure and contents of a database
2012-05-07	mutoss	Unified multiple testing procedures
2012-05-07	shotGroups	Analyze shot group data
2012-05-06	clime	Constrained L1-minimization for Inverse (covariance) Matrix Estimation
2012-05-06	Jmisc	Julian Miscellaneous Function
2012-05-06	scio	Sparse Column-wise Inverse Operator
2012-05-05	discreteMTP	Multiple testing procedures for discrete test statistics
2012-05-05	ISBF	Iterative Selection of Blocks of Features - ISBF
2012-05-05	pathClass	Classification using biological pathways as prior knowledge
2012-05-05	tensor	Tensor product of arrays
2012-05-05	varcompci	VARCOMPCI: A Package for Computation of Confidence Intervals for Variance Components of Mixed Models in R
2012-05-04	birch	Dealing with very large datasets using BIRCH
2012-05-04	kappalab	Non-additive measure and integral manipulation functions
2012-05-04	RSeed	borenstein analysis
2012-05-04	StateTrace	Bayesian Ordinal Analysis for State Trace Designs
2012-05-03	CDNmoney	Components of Canadian Monetary and Credit Aggregates
2012-05-03	detect	Analyzing Wildlife Data with Detection Error
2012-05-03	EvalEst	Dynamic Systems Estimation - extensions
2012-05-03	playitbyr	Representing and exploring data through sound
2012-05-02	emplik	Empirical likelihood ratio for censored/truncated data
2012-05-02	lassoshooting	L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting
2012-05-02	Modalclust	Hierarchical Modal Clustering
2012-05-02	MVPARTwrap	MVPARTwrap: Additional functionnalities for package mvpart
2012-05-02	rscproxy	statconn: provides portable C-style interface to R (StatConnector)
2012-05-02	tsfa	Time Series Factor Analysis
2012-05-02	tsne	T-distributed Stochastic Neighbor Embedding for R (t-SNE)
2012-05-01	condmixt	Conditional Density Estimation with Neural Network Conditional Mixtures
2012-05-01	plotmo	Plot a model's response while varying the values of the predictors
2012-04-30	csound	Accessing Csound functionality through R
2012-04-28	GUniFrac	Generalized UniFrac distances
2012-04-28	risaac	A fast cryptographic random number generator using ISAAC by Robert Jenkins
2012-04-27	weightedKmeans	Weighted KMeans Clustering
2012-04-26	ivbma	Bayesian Instrumental Variable Estimation and Model Determination via Conditional Bayes Factors
2012-04-25	binomlogit	Efficient MCMC for Binomial Logit Models
2012-04-25	partsm	Periodic Autoregressive Time Series Models
2012-04-25	superdiag	R Code for Testing Markov Chain Nonconvergence
2012-04-24	BINCO	Bootstrap Inference for Network COstruction
2012-04-24	CrypticIBDcheck	Identifying cryptic relatedness in genetic association studies
2012-04-24	geospt	Spatial geostatistics; some geostatistical and radial basis functions, prediction and cross validation; design of optimal spatial sampling networks based on geostatistical modelling
2012-04-23	bsml	Basis Selection from Multiple Libraries
2012-04-23	dynaTree	Dynamic trees for learning and design
2012-04-23	noia	Implementation of the Natural and Orthogonal InterAction (NOIA) model
2012-04-23	rknn	Random KNN Classification and Regression
2012-04-22	optimx	A Replacement and Extension of the optim() Function
2012-04-21	ANN	Feedforward Artificial Neural Network optimized by Genetic Algorithm
2012-04-21	labeledLoop	Labeled Loop
2012-04-21	TestSurvRec	Statistical tests to compare two survival curves with recurrent events
2012-04-20	dkDNA	Diffusion kernels on a set of genotypes
2012-04-20	mritc	MRI tissue classification
2012-04-19	bcp	A Package for Performing a Bayesian Analysis of Change Point Problems
2012-04-19	diffEq	Functions from the book Solving Differential Equations in R
2012-04-19	vec2dtransf	2D Cartesian Coordinate Transformation
2012-04-18	LOST	Missing morphometric data simulation and estimation
2012-04-18	VarEff	Variation of effective population size
2012-04-17	blighty	United Kingdom coastlines
2012-04-17	flux	Flux rate calculation from dynamic closed chamber measurements
2012-04-17	hdlm	Fitting High Dimensional Linear Models
2012-04-17	JohnsonDistribution	Johnson Distribution
2012-04-17	oblique.tree	Oblique Trees for Classification Data
2012-04-16	dgmb	dgmb Simulating data for PLS structural models
2012-04-16	GeneCycle	Identification of Periodically Expressed Genes
2012-04-16	iterators	Iterator construct for R
2012-04-16	splm	Econometric Models for Spatial Panel Data
2012-04-15	GeneralizedHyperbolic	The Generalized Hyperbolic Distribution
2012-04-15	mseapca	Metabolite set enrichment analysis for factor loading in principal component analysis
2012-04-14	HiddenMarkov	Hidden Markov Models
2012-04-13	DistributionUtils	Distribution Utilities
2012-04-13	LIHNPSD	Poisson Subordinated Distribution
2012-04-13	modTempEff	Modelling temperature effects using time series data
2012-04-13	scriptests	Transcript-based unit tests that are easy to create and maintain
2012-04-13	sphet	Spatial Models with heteroskedastic innovations
2012-04-13	SRMA	SRMA Analysis of Array-based Sequencing Data
2012-04-13	track	Track Objects
2012-04-13	VarianceGamma	The Variance Gamma Distribution
2012-04-12	mvnormtest	Normality test for multivariate variables
2012-04-12	RDieHarder	R interface to the dieharder RNG test suite
2012-04-12	reweight	Adjustment of Survey Respondent Weights
2012-04-12	sROC	Nonparametric Smooth ROC Curves for Continuous Data
2012-04-11	mmds	Mixture Model Distance Sampling (mmds)
2012-04-11	ncdf4	Interface to Unidata netCDF (version 4 or earlier) format data files
2012-04-11	rrcovNA	Scalable Robust Estimators with High Breakdown Point for Incomplete Data
2012-04-11	waffect	A package to simulate constrained phenotypes under a disease model H1
2012-04-10	adaptivetau	Tau-leaping stochastic simulation
2012-04-10	aod	Analysis of Overdispersed Data
2012-04-10	asypow	Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
2012-04-10	BayesDA	Functions and Datasets for the book "Bayesian Data Analysis"
2012-04-10	cccrm	CCC-RM
2012-04-10	elec.strat	Functions for election audits using stratified random samples
2012-04-10	ElemStatLearn	Data sets, functions and examples from the book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman
2012-04-10	EstSimPDMP	Estimation of the jump rate and simulation for piecewise-deterministic Markov processes
2012-04-10	gWidgetsRGtk2	Toolkit implementation of gWidgets for RGtk2
2012-04-10	polySegratioMM	Bayesian mixture models for marker dosage in autopolyploids
2012-04-10	QCA3	Yet another package for Qualitative Comparative Analysis
2012-04-10	varbvs	Variational inference for Bayesian variable selection
2012-04-09	negenes	Estimating the number of essential genes in a genome
2012-04-09	RcppDE	Global optimization by differential evolution in C++
2012-04-08	SGCS	Spatial Graph based Clustering Summaries for spatial point patterns
2012-04-07	fortunes	R Fortunes
2012-04-07	gooJSON	Google JSON Data Interpreter for R
2012-04-07	informR	R Tools for Creating Sequence Statistics
2012-04-07	leapp	latent effect adjustment after primary projection
2012-04-06	bigdata	Big Data Analytics
2012-04-06	dbEmpLikeGOF	Goodness-of-fit and two sample comparison tests using sample entropy
2012-04-06	race	Racing methods for the selection of the best
2012-04-05	cocorresp	Co-correspondence analysis methods
2012-04-05	lmm	Linear mixed models
2012-04-05	lordif	Logistic Regression Differential Item Functioning using IRT
2012-04-05	lxb	Fast LXB file reader
2012-04-05	permute	Functions for generating restricted permutations of data
2012-04-04	BHH2	Useful Functions for Box, Hunter and Hunter II
2012-04-04	bootstrap	Functions for the Book "An Introduction to the Bootstrap"
2012-04-04	corpora	Statistics and data sets for corpus frequency data
2012-04-04	depend.truncation	Inference for parametric and semiparametric models based on dependent truncation data
2012-04-04	etm	Empirical Transition Matrix
2012-04-04	Fahrmeir	Data from the book "Multivariate Statistical Modelling Based on Generalized Linear Models", first edition, by Ludwig Fahrmeir and Gerhard Tutz
2012-04-04	SCMA	Single-Case Meta-Analysis
2012-04-04	SenSrivastava	Datasets from Sen & Srivastava
2012-04-03	changeLOS	Change in LOS
2012-04-03	denstrip	Density strips and other methods for compactly illustrating distributions
2012-04-03	fdth	Frequency Distribution Tables, Histograms and Poligons
2012-04-03	FinAsym	Classifies implicit trading activity from market quotes and computes the probability of informed trading
2012-04-03	mvna	Nelson-Aalen estimator of the cumulative hazard in multistate models
2012-04-03	phmm	Proportional Hazards Mixed-effects Model (PHMM)
2012-04-03	UsingR	Data sets for the text "Using R for Introductory Statistics"
2012-04-03	zipfR	Statistical models for word frequency distributions
2012-04-02	apsrtable	apsrtable model-output formatter for social science
2012-04-02	gldist	An Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution
2012-04-02	TinnR	Resources of Tinn-R GUI/Editor for R Environment
2012-04-01	geosphere	Spherical Trigonometry
2012-04-01	ouch	Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses
2012-03-31	powerSurvEpi	Power and sample size calculation for survival analysis of epidemiological studies
2012-03-31	RcmdrPlugin.epack	Rcmdr plugin for time series
2012-03-31	StructR	Structural geology tools
2012-03-31	yaImpute	yaImpute: An R Package for k-NN Imputation
2012-03-30	BioStatR	Initiation à la Statistique avec R
2012-03-30	fossil	Palaeoecological and Palaeogeographical Analysis Tools
2012-03-30	gridDebug	Debugging Grid Graphics
2012-03-30	gridGraphviz	Drawing Graphs with Grid
2012-03-30	hdrcde	Highest density regions and conditional density estimation
2012-03-30	labdsv	Ordination and Multivariate Analysis for Ecology
2012-03-30	nacopula	Nested Archimedean Copulas
2012-03-30	RSiena	Siena - Simulation Investigation for Empirical Network Analysis
2012-03-30	rtfbs	R Transcription Factor Binding Site identification tool
2012-03-30	SpatialNP	Multivariate nonparametric methods based on spatial signs and ranks
2012-03-29	bgmm	Gaussian Mixture Modeling algorithms. Including the belief-based mixture modeling
2012-03-29	CPMCGLM	Correction of the pvalue after multiple coding
2012-03-29	ICS	Tools for Exploring Multivariate Data via ICS/ICA
2012-03-29	ICSNP	Tools for Multivariate Nonparametrics
2012-03-29	ResearchMethods	Using GUIs to help teach statistics to non-statistics students
2012-03-29	TWIX	Trees WIth eXtra splits
2012-03-28	sqldf	Perform SQL Selects on R Data Frames
2012-03-28	WWGbook	Functions and datasets for WWGbook
2012-03-27	gamair	Data for "GAMs: An Introduction with R"
2012-03-27	GPArotation	GPA Factor Rotation
2012-03-27	setRNG	Set (Normal) Random Number Generator and Seed
2012-03-26	citbcmst	Assigning tumor samples to CIT Breast Cancer Molecular Subtypes from gene expression data
2012-03-26	DIRECT	Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior
2012-03-26	FBN	FISH Based Normalization and Copy Number inference of SNP microarray data
2012-03-26	ldDesign	Design of experiments for detection of linkage disequilibrium
2012-03-26	makeR	Package for managing projects with multiple versions derived from a single source repository
2012-03-26	mlgt	Multi-Locus Geno-Typing
2012-03-26	survrec	Survival analysis for recurrent event data
2012-03-25	hddplot	Use known groups in high-dimensional data to derive scores for plots
2012-03-25	rankhazard	Rank-hazard plots
2012-03-24	FME	A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability, Monte Carlo Analysis
2012-03-24	Guerry	Maps, data and methods related to Guerry (1833) "Moral Statistics of France"
2012-03-24	MHadaptive	General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling
2012-03-23	BSDA	Basic Statistics and Data Analysis
2012-03-23	eigenmodel	Semiparametric factor and regression models for symmetric relational data
2012-03-23	filehashSQLite	Simple key-value database using SQLite
2012-03-23	LIM	Linear Inverse Model examples and solution methods
2012-03-23	npmlreg	Nonparametric maximum likelihood estimation for random effect models
2012-03-23	RcmdrPlugin.IPSUR	An IPSUR Plugin for the R Commander
2012-03-23	RenextGUI	GUI for Renext
2012-03-23	reporttools	Generate LaTeX tables of descriptive statistics
2012-03-23	SPA3G	SPA3G: R package for the method of Li and Cui (2012)
2012-03-23	TRAMPR	TRFLP Analysis and Matching Package for R
2012-03-23	vrmlgen	Generate 3D visualizations for data exploration on the web
2012-03-22	CollocInfer	Collocation Inference for Dynamic Systems
2012-03-22	devEMF	EMF graphics output device
2012-03-22	ecodist	Dissimilarity-based functions for ecological analysis
2012-03-22	ISwR	Introductory Statistics with R
2012-03-22	mixlow	mixlow method for assessing drug synergism
2012-03-21	Bessel	Bessel – Bessel Functions Computations and Approximations
2012-03-21	BsMD	Bayes Screening and Model Discrimination
2012-03-21	cacher	Tools for caching and distributing statistical analyses
2012-03-21	choplump	Choplump tests
2012-03-21	FKF	Fast Kalman Filter
2012-03-21	hbim	Hill/Bliss Independence Model for Combination Vaccines
2012-03-21	lle	Locally linear embedding
2012-03-21	MCAPS	MCAPS data and results
2012-03-21	mvtsplot	Multivariate Time Series Plot
2012-03-21	polyapost	Simulating from the Polya posterior
2012-03-21	ppiPre	Predict protein-protein interactions based on functional and topological similarities
2012-03-21	pseudo	Pseudo - observations
2012-03-21	represent	Determine the representativity of two multidimensional data sets
2012-03-21	stashR	A Set of Tools for Administering SHared Repositories
2012-03-20	blender	Analyze biotic homogenization of landscapes
2012-03-20	BLR	Bayesian Linear Regression
2012-03-20	calibrate	Calibration of Scatterplot and Biplot Axes
2012-03-20	cloudUtil	Cloud Util Plots
2012-03-20	HardyWeinberg	Graphical tests for Hardy-Weinberg equilibrium
2012-03-20	popbio	Construction and analysis of matrix population models
2012-03-20	QuantPsyc	Quantitative Psychology Tools
2012-03-20	rysgran	Grain size analysis, textural classifications and distribution of unconsolidated sediments
2012-03-19	acs	Download and manipulate data from the US Census American Community Survey
2012-03-19	ALS	multivariate curve resolution alternating least squares (MCR-ALS)
2012-03-19	arulesNBMiner	Mining NB-Frequent Itemsets and NB-Precise Rules
2012-03-19	AUCRF	Variable Selection with Random Forest and the Area Under the Curve
2012-03-19	bio.infer	Predict environmental conditions from biological observations
2012-03-19	merror	Accuracy and Precision of Measurements
2012-03-19	mgpd	mgpd: Functions for multivariate generalized Pareto distribution (MGPD of Type II)
2012-03-19	nnls	The Lawson-Hanson algorithm for non-negative least squares (NNLS)
2012-03-19	qp	q-order partial correlation graph search algorithm
2012-03-19	tileHMM	Hidden Markov Models for ChIP-on-Chip Analysis
2012-03-18	LCAextend	Latent Class Analysis (LCA) with familial dependence in extended pedigrees
2012-03-18	plumbr	Mutable and dynamic data models
2012-03-18	PSAgraphics	Propensity Score Analysis Graphics
2012-03-18	rcdd	rcdd (Computational Geometry)
2012-03-17	DeducerPlugInExample	Deducer Plug-in Example
2012-03-17	DeducerPlugInScaling	Reliability and factor analysis plugin
2012-03-16	bmd	Benchmark dose analysis for dose-response data
2012-03-16	ezsim	provide an easy to use framework to conduct simulation
2012-03-16	OLScurve	OLS growth curve trajectories
2012-03-16	R2wd	Write MS-Word documents from R
2012-03-16	RPMM	Recursively Partitioned Mixture Model
2012-03-16	SBSA	Simplified Bayesian Sensitivity Analysis
2012-03-16	truncdist	Truncated Random Variables
2012-03-15	gee	Generalized Estimation Equation solver
2012-03-15	pathmox	Segmentation Trees in Partial Least Squares Path Modeling
2012-03-15	pyramid	Functions to draw population pyramid
2012-03-15	VarSwapPrice	Pricing a variance swap on an equity index
2012-03-14	BrailleR	Improved access for blind useRs
2012-03-14	filehash	Simple key-value database
2012-03-14	PKgraph	Model diagnostics for population pharmacokinetic models
2012-03-14	stockPortfolio	Build stock models and analyze stock portfolios
2012-03-13	CPHshape	Find the maximum likelihood estimator of the shape constrained hazard baseline and the effect parameters in the Cox proportional hazards model
2012-03-13	LinearizedSVR	Linearized Support Vector Regression
2012-03-13	waveslim	Basic wavelet routines for one-, two- and three-dimensional signal processing
2012-03-12	cacheSweave	Tools for caching Sweave computations
2012-03-12	MDR	Detect gene-gene interactions using multifactor dimensionality reduction
2012-03-12	RcmdrPlugin.UCA	UCA Rcmdr Plug-in
2012-03-12	SVGMapping	Map experimental data on custom-made SVG file
2012-03-12	zipcode	U.S. ZIP Code database for geocoding
2012-03-11	klausuR	Multiple Choice Test Evaluation
2012-03-09	qLearn	Estimation and inference for Q-learning
2012-03-08	eqtl	Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis
2012-03-08	Mangrove	Risk prediction on trees
2012-03-08	rngSetSeed	Initialization of the R base random number generator Mersenne-Twister with a vector of an arbitrary length
2012-03-08	soiltexture	Functions for soil texture plot, classification and transformation
2012-03-07	GSM	Gamma Shape Mixture
2012-03-07	JPSurv	Methods for population-based cancer survival analysis
2012-03-07	MVA	An Introduction to Applied Multivariate Analysis with R
2012-03-07	tabuSearch	R based tabu search algorithm
2012-03-06	malaria.em	EM Estimation of Malaria Haplotype Probabilities from Multiply Infected Human Blood Samples
2012-03-05	maxLik	Maximum Likelihood Estimation
2012-03-05	soobench	Single Objective Optimization Benchmark Functions
2012-03-04	AmericanCallOpt	This package includes pricing function for selected American call options with underlying assets that generate payouts
2012-03-03	qtbase	Interface between R and Qt
2012-03-03	qtpaint	Qt-based painting infrastructure
2012-03-02	iwtp	Numerical evaluation willingness to pay based on interval data
2012-03-02	MLCM	Maximum Likelihood Conjoint Measurement
2012-03-01	CRM	Continual Reassessment Method (CRM) for Phase I Clinical Trials
2012-03-01	curvetest	The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities
2012-03-01	log4r	A simple logging system for R, based on log4j
2012-03-01	rBeta2009	The Beta Random Number and Dirichlet Random Vector Generating Functions
2012-03-01	SCRT	Single-Case Randomization Tests
2012-03-01	simecol	Simulation of ecological (and other) dynamic systems
2012-02-29	benchden	28 benchmark densities from Berlinet/Devroye (1994)
2012-02-28	survivalBIV	Estimation of the bivariate distribution function
2012-02-27	Rknots	Rknots
2012-02-27	superpc	Supervised principal components
2012-02-26	DEMEtics	Evaluating the genetic differentiation between populations based on Gst and D values
2012-02-23	govdat	Interface to API methods for government data
2012-02-23	NetPreProc	NetPreProc: Network Pre-Processing and normalization
2012-02-22	mlogitBMA	Bayesian Model Averaging for Multinomial Logit Models
2012-02-22	PerfMeas	PerfMeas: Performance Measures for ranking and classification tasks
2012-02-22	polytomous	Polytomous logistic regression for fixed and mixed effects
2012-02-21	bpca	Biplot of Multivariate Data Based on Principal Components Analysis
2012-02-21	caper	Comparative Analyses of Phylogenetics and Evolution in R
2012-02-21	gamlss.cens	Fitting an interval response variable using gamlss.family distributions
2012-02-21	gamlss.mx	A GAMLSS add on package for fitting mixture distributions
2012-02-21	gamlss.tr	Generating and fitting truncated (gamlss.family) distributions
2012-02-21	RMallow	Fit Multi-Modal Mallows' Models to ranking data
2012-02-20	barcode	Barcode distribution plots
2012-02-20	bionetdata	Biological and chemical data networks
2012-02-20	gpairs	gpairs: The Generalized Pairs Plot
2012-02-20	ops	Optimal Power Space Transformation
2012-02-20	vcd	Visualizing Categorical Data
2012-02-20	YaleToolkit	Data exploration tools from Yale University
2012-02-19	fastVAR	fastVAR
2012-02-19	perturb	Tools for evaluating collinearity
2012-02-17	capushe	Capushe, data-driven slope estimation and dimension jump
2012-02-17	turboEM	A Suite of Convergence Acceleration Schemes for EM and MM algorithms
2012-02-17	WideLM	Fitting many skinny linear models to a single data set
2012-02-16	chemometrics	Multivariate Statistical Analysis in Chemometrics
2012-02-16	tlemix	Trimmed Maximum Likelihood Estimation
2012-02-15	gamlss.demo	Demos for GAMLSS
2012-02-15	gamlss.nl	Fitting non linear parametric GAMLSS models
2012-02-15	grImport	Importing Vector Graphics
2012-02-14	JADE	JADE and other BSS methods as well as some BSS performance criteria
2012-02-13	dispmod	Dispersion models
2012-02-13	giRaph	The giRaph package for graph representation in R
2012-02-13	OIsurv	Survival analysis supplement to OpenIntro guide
2012-02-13	sampling	Survey Sampling
2012-02-12	BurStFin	Burns Statistics Financial
2012-02-12	opencpu.encode	opencpu object encoder/decoder
2012-02-12	simPopulation	Simulation of synthetic populations for surveys based on sample data
2012-02-11	fume	FUME package
2012-02-11	idbg	R debugger
2012-02-10	pairheatmap	A tool for comparing heatmaps
2012-02-08	automap	Automatic interpolation package
2012-02-08	genridge	Generalized ridge trace plots for ridge regression
2012-02-08	readMLData	Reading machine learning benchmark data sets from different sources in their original format
2012-02-07	udunits2	udunits-2 bindings for R
2012-02-06	cpm	Sequential Parametric and Nonparametric Change Detection
2012-02-06	futile.paradigm	A framework for working in a functional programming paradigm in R
2012-02-06	GMD	Generalized Minimum Distance of distributions
2012-02-06	likelihood	Methods for maximum likelihood estimation
2012-02-06	rdatamarket	Data access API for DataMarket.com
2012-02-05	SCperf	Supply Chain Perform
2012-02-04	popdemo	Provides Tools For Demographic Modelling Using Projection Matrices
2012-02-03	EquiNorm	Normalize expression data using equivalently expressed genes
2012-02-03	lmbc	Linear Model Bias Correction for RNA-Seq Data
2012-02-02	DiscreteLaplace	Discrete Laplace distribution
2012-02-02	neuRosim	Functions to generate fMRI data including activated data, noise data and resting state data
2012-02-02	rlecuyer	R interface to RNG with multiple streams
2012-01-31	bayesMCClust	Mixtures-of-Experts Markov Chain Clustering and Dirichlet Multinomial Clustering
2012-01-31	CAscaling	CA scaling in R
2012-01-31	modeltools	Tools and Classes for Statistical Models
2012-01-31	rstream	Streams of random numbers
2012-01-31	TPAM	TPAM
2012-01-31	vacem	Vaccination Activities Coverage Estimation Model
2012-01-30	Rwinsteps	Running Winsteps in R
2012-01-30	semdiag	Structural equation modeling diagnostics
2012-01-29	marelac	Tools for Aquatic Sciences
2012-01-28	ensembleBMA	Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
2012-01-28	geotools	Geo tools
2012-01-28	lestat	A package for LEarning STATistics
2012-01-28	tlmec	Linear Student-t Mixed-Effects Models with Censored Data
2012-01-27	Ace	Assay-based Cross-sectional Estimation of incidence rates
2012-01-27	cacIRT	Classification accuracy and consistency under Item Response Theory
2012-01-27	geepack	Generalized Estimating Equation Package
2012-01-27	GenKern	Functions for generating and manipulating binned kernel density estimates
2012-01-27	MIPHENO	Mutant Identification through Probabilistic High throughput Enabled NOrmalization
2012-01-26	speedglm	Fitting Linear and Generalized Linear Models to large data sets
2012-01-26	traitr	An interface for creating GUIs modeled in part after traits UI module for python
2012-01-25	DAAGxtras	Data Sets and Functions, supplementary to DAAG
2012-01-24	CALINE3	R interface to Fortran 77 implementation of CALINE3
2012-01-24	moments	Moments, cumulants, skewness, kurtosis and related tests
2012-01-24	oc	OC Roll Call Analysis Software
2012-01-24	occ	Estimates PET neuroreceptor occupancies
2012-01-24	registry	Registry infrastructure
2012-01-23	rasclass	Supervised Raster Image Classification
2012-01-22	care	High-Dimensional Regression and CAR Score Variable Selection
2012-01-22	longitudinal	Analysis of Multiple Time Course Data
2012-01-22	SEER2R	reading and writing SEER*STAT data files
2012-01-21	fastmatch	Fast match() function
2012-01-20	apple	Approximate Path for Penalized Likelihood Estimators
2012-01-19	TunePareto	Multi-objective parameter tuning for classifiers
2012-01-18	cytoDiv	Cytometric diversity indices
2012-01-18	DOBAD	Analysis of Discretely Observed linear Birth-And-Death(-and-immigration) Markov Chains
2012-01-17	bst	Gradient Boosting
2012-01-17	ifa	Independent Factor Analysis
2012-01-17	RMySQL	R interface to the MySQL database
2012-01-17	rngwell19937	WELL19937a random number generator implemented with 53 bit output
2012-01-17	wnominate	WNOMINATE Roll Call Analysis Software
2012-01-16	DBGSA	methods of distance-based gene set functional enrichment analysis
2012-01-15	Lmoments	L-moments and quantile mixtures
2012-01-15	PKPDmodels	Pharmacokinetic/pharmacodynamic models
2012-01-14	cepp	Context Driven Exploratory Projection Pursuit
2012-01-14	SOAR	Memory management in R by delayed assignments
2012-01-13	eiPack	eiPack: Ecological Inference and Higher-Dimension Data Management
2012-01-13	glmmBUGS	Generalised Linear Mixed Models and Spatial Models with WinBUGS, BRugs, or OpenBUGS
2012-01-13	lga	Tools for linear grouping analysis (LGA)
2012-01-13	pgam	Poisson-Gamma Additive Models
2012-01-13	randaes	Random number generator based on AES cipher
2012-01-12	fts	R interface to tslib (a time series library in c++)
2012-01-12	intReg	Interval Regression
2012-01-12	lisp	List-processing à la SRFI-1
2012-01-12	MatrixModels	Modelling with Sparse And Dense Matrices
2012-01-12	MCPAN	Multiple comparisons using normal approximation
2012-01-12	RecordLinkage	Record Linkage in R
2012-01-12	rstiefel	Random orthonormal matrix generation on the Stiefel manifold
2012-01-12	translate	Bindings for the Google Translate API v2
2012-01-11	G2Sd	Grain-size Statistics and Description of Sediment
2012-01-11	RGIFT	Create quizzes in GIFT Format
2012-01-10	hitandrun	"Hit and Run" method for sampling uniformly form convex shapes
2012-01-10	numConversion	Test of accuracy of formatting numbers
2012-01-10	RSNNS	Neural Networks in R using the Stuttgart Neural Network Simulator (SNNS)
2012-01-09	compute.es	Compute Effect Sizes
2012-01-09	quantspec	Quantile-based Spectral Analysis of Time Series
2012-01-09	simexaft	simexaft
2012-01-09	wccsom	SOM networks for comparing patterns with peak shifts
2012-01-08	desirability	Desirabiliy Function Optimization and Ranking
2012-01-08	LambertW	Analyze and Gaussianize skewed, heavy-tailed data
2012-01-08	rsae	Robust Small Area Estimation
2012-01-07	curvclust	Curve clustering
2012-01-07	events	Store and manipulate event data
2012-01-07	ineq	Measuring Inequality, Concentration, and Poverty
2012-01-07	latticeDensity	Density estimation and nonparametric regression on irregular regions
2012-01-07	mnormt	The multivariate normal and t distributions
2012-01-07	ucminf	General-purpose unconstrained non-linear optimization
2012-01-06	rportfolios	Random portfolio generation
2012-01-05	hett	Heteroscedastic t-regression
2012-01-05	MImix	Mixture summary method for multiple imputation
2012-01-04	emg	Exponentially Modified Gaussian (EMG) Distribution
2012-01-04	latticist	A graphical user interface for exploratory visualisation
2012-01-04	mcbiopi	Matrix Computation Based Identification Of Prime Implicants
2012-01-03	AWS.tools	R package to use Amazon Web Services
2012-01-03	CvM2SL1Test	L1-version of Cramer-von Mises Two Sample Tests
2012-01-03	CvM2SL2Test	Cramer-von Mises Two Sample Tests
2012-01-03	GOGANPA	GO-Functional-Network-based Gene-Set-Analysis
2012-01-03	micEconCES	Analysis with the Constant Elasticity of Scale (CES) function
2012-01-03	rpsychi	Statistics for psychiatric research
2012-01-02	simFrame	Simulation framework
2011-12-30	cin	Causal Inference for Neuroscience
2011-12-30	fame	Interface for FAME time series database
2011-12-30	languageR	Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics"
2011-12-30	NormalGamma	Normal-gamma convolution model
2011-12-30	RTisean	R interface to Tisean algorithms
2011-12-30	wasim	Visualisation and analysis of output files of the hydrological model WASIM
2011-12-28	ADGofTest	Anderson-Darling GoF test
2011-12-28	biglars	Scalable Least-Angle Regression and Lasso
2011-12-27	ICEinfer	Incremental Cost-Effectiveness (ICE) Statistical Inference from Two Unbiased Samples
2011-12-27	KRLS	Kernel-based Regularized Least Squares (KRLS)
2011-12-27	onion	octonions and quaternions
2011-12-27	RXshrink	Maximum Likelihood Shrinkage via Generalized Ridge or Least Angle Regression
2011-12-27	untb	ecological drift under the UNTB
2011-12-25	glmmGS	Gauss-Seidel Generalized Linear Mixed Model solver
2011-12-23	curvHDR	curvHDR filtering of flow cytometry samples
2011-12-23	ktspair	k-Top Scoring Pairs for Microarray Classification
2011-12-23	roxygen	Literate Programming in R
2011-12-23	tiger	TIme series of Grouped ERrors
2011-12-21	irtProb	Utilities and Probability Distributions Related to Multidimensional Person Item Response Models (IRT)
2011-12-21	kriging	Ordinary Kriging
2011-12-21	RiDMC	R interface to the idmclib library
2011-12-20	nFactors	Parallel Analysis and Non Graphical Solutions to the Cattell Scree Test
2011-12-19	Holidays	Holiday and halfday data, for use with the TimeWarp package
2011-12-19	schwartz97	A package on the Schwartz two-factor commodity model
2011-12-18	RSofia	Port of sofia-ml (http://code.google.com/p/sofia-ml/) to R
2011-12-16	DECIDE	DEComposition of Indirect and Direct Effects
2011-12-16	spaceExt	Extension of SPACE
2011-12-15	ascrda	Augmented SCRDA
2011-12-15	MVR	Mean-Variance Regularization
2011-12-13	exptest	Tests for Exponentiality
2011-12-13	LCFdata	Data sets for package “LMERConvenienceFunctions”
2011-12-13	objectProperties	A factory of self-describing properties
2011-12-12	bmp	Read Windows Bitmap (BMP) images
2011-12-12	readbitmap	Read bitmap images (BMP,JPEG,PNG) without external dependencies
2011-12-11	EMC	Evolutionary Monte Carlo (EMC) algorithm
2011-12-11	EMCC	Evolutionary Monte Carlo (EMC) methods for clustering
2011-12-11	scaRabee	Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models
2011-12-11	SMC	Sequential Monte Carlo (SMC) Algorithm
2011-12-10	AER	Applied Econometrics with R
2011-12-10	cit	Causal Inference Test
2011-12-10	PtProcess	Time Dependent Point Process Modelling
2011-12-09	PairViz	Visualization using Eulerian tours and Hamiltonian decompositions
2011-12-09	ROI	R Optimization Infrastructure
2011-12-08	bamdit	Bayesian Meta-Analysis of diagnostic test data
2011-12-08	pgmm	Parsimonious Gaussian mixture models
2011-12-08	ThresholdROC	Optimum threshold estimation based on cost function in a two and three state setting
2011-12-07	spt	Sierpinski Pedal Triangle
2011-12-07	VariABEL	Testing of genotypic variance heterogeneity to detect potentially interacting SNP
2011-12-05	BiomarkeR	Paired (pBI) and Unpaired Biomarker Identifier (uBI) including a method to infer networks
2011-12-05	fastGHQuad	Fast Rcpp implementation of Gauss-Hermite quadrature
2011-12-04	bstats	Basic statistical functions for R
2011-12-03	base64	Base 64 encoder/decoder
2011-12-02	hof	More higher order functions for R
2011-12-02	int64	64 bit integer types
2011-12-02	MsatAllele	Visualizes the scoring and binning of microsatellite fragment sizes
2011-12-02	rrdflibs	rrdflibs - package with Jena and Apache HTTP libraries for use with rrdf
2011-12-02	supclust	Supervised Clustering of Predictor Variables such as Genes
2011-12-01	OrdFacReg	Least squares, logistic, and Cox-regression with ordered predictors
2011-12-01	OrdMonReg	Compute least squares estimates of one bounded or two ordered isotonic regression curves
2011-12-01	pamr	Pam: prediction analysis for microarrays
2011-12-01	roxygen2	In-source documentation for R
2011-12-01	selectMeta	Estimation of weight functions in meta analysis
2011-11-30	plugdensity	Plug-in Kernel Density Estimation
2011-11-29	gwrr	Geographically weighted regression with penalties and diagnostic tools
2011-11-29	kmi	Kaplan-Meier multiple imputation for the analysis of cumulative incidence functions in the competing risks setting
2011-11-29	modehunt	Multiscale Analysis for Density Functions
2011-11-29	qtlbook	Datasets for the R/qtl book
2011-11-29	Rdrools	A rules engine for R based on Drools
2011-11-29	smacof	SMACOF for Multidimensional Scaling
2011-11-29	smoothtail	Smooth Estimation of GPD Shape Parameter
2011-11-28	dse1	DSE (unbundled transition package)
2011-11-28	dse2	DSE (unbundled transition package)
2011-11-28	gb	Generalize Lambda Distribution and Generalized Bootstrapping
2011-11-28	pls	Partial Least Squares and Principal Component regression
2011-11-27	abind	Combine multi-dimensional arrays
2011-11-27	RSVGTipsDevice	An R SVG graphics device with dynamic tips and hyperlinks
2011-11-27	tkrgl	TK widget tools for rgl package
2011-11-26	Rdroolsjars	Rdrools jars
2011-11-25	DPM.GGM	Dirichlet Process Mixtures (DPM) and related models using Gaussian Graphical Models (GGM) for Sparse covariance estimation in heterogeneous samples
2011-11-25	mpm	Multivariate Projection Methods
2011-11-24	WMCapacity	GUI implementing Bayesian working memory models
2011-11-22	polyphemus	Genome wide analysis of RNA Polymerase II-based ChIP Seq data
2011-11-22	Survgini	The Gini concentration test for survival data
2011-11-21	kst	Knowledge Space Theory
2011-11-21	migui	Graphical User Interface of the mi Package
2011-11-20	AcceptanceSampling	Creation and evaluation of Acceptance Sampling Plans
2011-11-19	ProfileLikelihood	Profile Likelihood for a Parameter in Commonly Used Statistical Models
2011-11-19	someMTP	Some Multiple Testing Procedures
2011-11-19	tkrplot	TK Rplot
2011-11-17	gamboostLSS	Boosting Methods for GAMLSS Models
2011-11-17	liso	Fitting lasso penalised additive isotone models
2011-11-16	PhysicalActivity	Process Physical Activity Accelerometer Data
2011-11-16	SynergizeR	Interface to The Synergizer service for translating between sets of biological identifiers
2011-11-16	SyNet	Inference and Analysis of Sympatry Networks
2011-11-15	multicool	Permutations of multisets in cool-lex order
2011-11-14	geoRglm	geoRglm - a package for generalised linear spatial models
2011-11-14	StreamingLm	What the package does (short line)
2011-11-13	itsmr	Time series analysis package for students
2011-11-13	mvProbit	Multivariate Probit Models
2011-11-10	recommenderlab	Lab for Developing and Testing Recommender Algorithms
2011-11-10	recommenderlabBX	Book-Crossing Dataset (BX) for recommenderlab
2011-11-10	recommenderlabJester	Jester Dataset for recommenderlab
2011-11-09	amap	Another Multidimensional Analysis Package
2011-11-07	depmix	Dependent Mixture Models
2011-11-07	fxregime	Exchange Rate Regime Analysis
2011-11-07	lorec	LOw Rand and sparsE Covariance matrix estimation
2011-11-07	MAINT.Data	Model and Analize Interval Data
2011-11-07	RArcInfo	Functions to import data from Arc/Info V7.x binary coverages
2011-11-04	cmrutils	Misc Functions of the Center for the Mathematical Research
2011-11-04	mixreg	Functions to fit mixtures of regressions
2011-11-04	NPsimex	Nonparametric Smoothing for contaminated data using Simulation-Extrapolation
2011-11-03	bestglm	Best Subset GLM
2011-11-03	dynpred	Companion package to "Dynamic Prediction in Clinical Survival Analysis"
2011-11-03	LSD	Lots of Superior Depictions
2011-11-03	mail	Sending Email Notifications from R
2011-11-02	arf3DS4	Activated Region Fitting, fMRI data analysis (3D)
2011-11-02	EL	Two-sample Empirical Likelihood
2011-11-02	gld	Estimation and use of the generalised (Tukey) lambda distribution
2011-11-02	nlrwr	Nonlinear regression with R
2011-11-02	rationalfun	Manipulation of Rational Functions
2011-11-02	SDisc	Integrated methodology for the identification of homogeneous subtypes in data
2011-10-28	objectSignals	objectSignals
2011-10-27	alr3	Data to accompany Applied Linear Regression 3rd edition
2011-10-27	FRBData	Download interest rate data from FRB's website
2011-10-26	emma	Evolutionary model-based multiresponse approach
2011-10-26	prLogistic	Estimation of Prevalence Ratios using Logistic Models
2011-10-26	ptinpoly	Point-In-Polyhedron Test (2D and 3D)
2011-10-26	smfsb	SMfSB 2e: Stochastic Modelling for Systems Biology, second edition
2011-10-25	ACNE	Affymetrix SNP probe-summarization using non-negative matrix factorization
2011-10-25	reportr	A general message and error reporting system
2011-10-24	cairoDevice	Cairo-based cross-platform antialiased graphics device driver
2011-10-24	MatchIt	MatchIt
2011-10-23	alphahull	Generalization of the convex hull of a sample of points in the plane
2011-10-23	AnnotLists	AnnotLists: A tool to annotate multiple lists from a specific annotation file
2011-10-23	MarkedPointProcess	Analysis of Marks of Marked Point Processes
2011-10-23	webvis	Create graphics for the web from R
2011-10-20	lspls	LS-PLS Models
2011-10-20	MultEq	Multiple Equivalence Tests and Simultaneous Confidence Intervals
2011-10-20	rgp	R genetic programming framework
2011-10-19	cudaBayesreg	CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis
2011-10-19	dr	Methods for dimension reduction for regression
2011-10-19	geophys	Geophysics, Continuum Mechanics, Mogi Model
2011-10-19	RobAStBase	Robust Asymptotic Statistics
2011-10-19	ROptEst	Optimally robust estimation
2011-10-18	clValid	Validation of Clustering Results
2011-10-18	logconcens	Maximum likelihood estimation of a log-concave density based on censored data
2011-10-18	mlmRev	Examples from Multilevel Modelling Software Review
2011-10-17	bayesmix	Bayesian Mixture Models with JAGS
2011-10-17	BayesQTLBIC	Bayesian multi-locus QTL analysis based on the BIC criterion
2011-10-17	rDNA	R Bindings for the Discourse Network Analyzer
2011-10-17	relimp	Relative Contribution of Effects in a Regression Model
2011-10-17	SASmixed	Data sets from "SAS System for Mixed Models"
2011-10-15	AlgDesign	Algorithmic Experimental Design
2011-10-15	rzmq	R binding for zmq (http://www.zeromq.org/)
2011-10-14	saves	Fast load variables
2011-10-12	mvngGrAd	Software for moving grid adjustment in plant breeding field trials
2011-10-11	JoSAE	Functions for unit-level small area estimators and their variances
2011-10-11	rbounds	Perform Rosenbaum bounds sensitivity tests for matched and unmatched data
2011-10-10	PKreport	A reporting pipeline for checking population pharmacokinetic model assumption
2011-10-10	RJaCGH	Reversible Jump MCMC for the analysis of CGH arrays
2011-10-08	pcrcoal	A package implementing the coalescent approach to PCR simulation developed by Weiss and von Haeseler (NAR, 1997)
2011-10-06	ROI.plugin.glpk	ROI-plugin GLPK
2011-10-06	ROI.plugin.quadprog	ROI-plugin quadprog
2011-10-06	ROI.plugin.symphony	ROI-plugin symphony
2011-10-04	remix	Remix your data
2011-10-03	RWinEdt	R-WinEdt
2011-10-01	weightedScores	Weighted scores method for regression with dependent data
2011-09-30	dhglm	Double Hierarchical Generalized Linear Models
2011-09-30	matlab	MATLAB emulation package
2011-09-30	qcc	Quality Control Charts
2011-09-29	ascii	Export R objects to several markup languages
2011-09-29	stremo	Functions to help the process of learning structural equation modelling
2011-09-26	prim	Patient Rule Induction Method (PRIM)
2011-09-14	glasso	Graphical lasso- estimation of Gaussian graphical models
2011-09-11	ipw	Estimate inverse probability weights
2011-09-10	feature	Feature significance for multivariate kernel density estimation
2011-09-10	McParre	Run a Regenerative Markov chain in Parallel on a Cluster
2011-09-10	NBDdirichlet	NBD-Dirichlet model of consumer buying behavior for marketing research
2011-09-09	gsl	wrapper for the Gnu Scientific Library
2011-09-09	sensitivityPStrat	Principal Stratification Sensitivity Analysis Functions
2011-09-08	MIfuns	Pharmacometric tools for data preparation, modeling, simulation, and reporting
2011-09-08	mseq	Modeling non-uniformity in short-read rates in RNA-Seq data
2011-09-08	multicore	Parallel processing of R code on machines with multiple cores or CPUs
2011-09-07	ISOweek	Week of the year and weekday according to ISO 8601
2011-09-02	fork	R functions for handling multiple processes
2011-09-02	ncdf	Interface to Unidata netCDF data files
2011-09-02	SII	Calculate ANSI S3.5-1997 Speech Intelligibility Index
2011-08-30	bbemkr	Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error
2011-08-30	rJavax	rJava extensions
2011-08-28	viopoints	1-D Scatter Plots with Jitter Using Kernel Density Estimates
2011-08-27	varSelectIP	Objective Bayes Model Selection
2011-08-24	equate	Statistical Methods for Test Score Equating
2011-08-24	RobustAFT	Truncated Maximum Likelihood fit and Robust Accelerated Failure Time regression for Gaussian and logWeibull case
2011-08-23	interactivity	toggle R interactive mode
2011-08-23	mefa	Multivariate Data Handling in Ecology and Biogeography
2011-08-18	ieeeround	Functions to set and get the IEEE rounding mode
2011-08-17	features	Feature Extraction for Discretely-Sampled Functional Data
2011-08-17	profileModel	Tools for profiling inference functions for various model classes
2011-08-17	ramps	Bayesian Geostatistical Modeling with RAMPS
2011-08-15	bcool	Bringing to light significant Columns correlated with Organism Labels
2011-08-14	RcmdrPlugin.doex	Rcmdr plugin for Stat 4309 course
2011-08-12	CITAN	CITation ANalysis toolpack
2011-08-12	dfoptim	Derivative-free Optimization
2011-08-12	fun	Use R for Fun
2011-08-12	hybridHclust	Hybrid hierarchical clustering
2011-08-12	MCMChybridGP	Hybrid Markov chain Monte Carlo using Gaussian Processes
2011-08-12	potts	Markov Chain Monte Carlo for Potts Models
2011-08-10	venneuler	Venn and Euler Diagrams
2011-08-09	binomTools	Performing diagnostics on binomial regression models
2011-08-09	glmmML	Generalized linear models with clustering
2011-08-09	mmap	Map Pages of Memory
2011-08-08	lmmfit	Goodness-of-fit-measures for linear mixed models with one-level-grouping
2011-08-08	mxkssd	Efficient mixed-level k-circulant supersaturated designs
2011-08-08	REEMtree	Regression Trees with Random Effects for Longitudinal (Panel) Data
2011-08-06	LargeRegression	Large Regressions
2011-08-05	DAGGER	Consensus genetic maps
2011-08-05	mkssd	Efficient multi-level k-circulant supersaturated designs
2011-08-04	SPIAssay	A genetic-based assay for the identification of cell lines
2011-08-01	fdaMixed	Functional data analysis in a mixed model framework
2011-07-28	dae	Functions useful in the design and ANOVA of experiments
2011-07-28	r2lh	R to LaTeX and HTML
2011-07-28	soma	General-purpose optimisation with the Self-Organising Migrating Algorithm
2011-07-27	fwdmsa	Forward search for Mokken scale analysis
2011-07-26	SciViews	SciViews GUI API - Main package
2011-07-25	plink	IRT Separate Calibration Linking Methods
2011-07-23	circular	Circular Statistics
2011-07-23	CLSOCP	A smoothing Newton method SOCP solver
2011-07-23	minimax	Minimax distribution family
2011-07-23	productplots	NA
2011-07-23	s4vd	Biclustering via sparse singular value decomposition incorporating stability selection
2011-07-23	stratasphere	Stratified Spherical Approximate Conditional Modeling
2011-07-21	MFSAS	Creation and Evaluation of Multilevel Fixed and Sequential Sampling Plans
2011-07-19	pixmap	Bitmap Images (“Pixel Maps”)
2011-07-18	B2Z	Bayesian Two-Zone Model
2011-07-18	MNM	Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks
2011-07-07	Rjmsjars	Rjms jars
2011-07-06	GPseq	gpseq: Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments
2011-07-06	limitplot	Jitter/CI Plot with Ordered Points Below the Limit of Detection
2011-07-05	confReg	Confidence Estimators for Individual Regression Predictions
2011-06-29	enrichvs	Enrichment assessment of virtual screening approaches
2011-06-29	samr	SAM: Significance Analysis of Microarrays
2011-06-26	lsa	Latent Semantic Analysis
2011-06-23	gsmoothr	Smoothing tools
2011-06-20	MergeGUI	A GUI for Merging Datasets in R
2011-06-19	probemapper	Connects to QBRC's ProbeMapper platform
2011-06-17	LGS	simulating Linkage Group Selection (LGS)
2011-06-17	pycno	Pycnophylactic Interpolation
2011-06-17	RColorBrewer	ColorBrewer palettes
2011-06-15	longmemo	Statistics for Long-Memory Processes (Jan Beran) – Data and Functions
2011-06-15	MetaPCA	MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data
2011-06-12	glogis	Fitting and Testing Generalized Logistic Distributions
2011-06-05	FLLat	Fused Lasso Latent Feature Model
2011-06-03	orthogonalsplinebasis	Orthogonal Bspline Basis Functions
2011-05-31	reshapeGUI	A GUI for the reshape2 and plyr packages
2011-05-29	GANPA	Gene Association Network-based Pathway Analysis
2011-05-26	gtcorr	Calculate efficiencies of group testing algorithms with correlated responses
2011-05-24	cfa	Analysis of configuration frequencies (CFA)
2011-05-23	BLCOP	Black-Litterman and copula-opinion pooling frameworks
2011-05-23	colbycol	Read big text files column by column, sometimes much bigger than available RAM, into R
2011-05-18	Kendall	Kendall rank correlation and Mann-Kendall trend test
2011-05-18	pear	Package for Periodic Autoregression Analysis
2011-05-17	gcExplorer	Graphical Cluster Explorer
2011-05-17	SpeciesMix	Fit Mixtures of Archetype species
2011-05-11	COMPoissonReg	Conway-Maxwell Poisson (COM-Poisson) Regression
2011-05-11	PCIT	PCIT algorithm - Partial Correlation Coefficient with Information Theory
2011-05-09	CADFtest	This package performs the CADF unit root test proposed in Hansen (1995)
2011-05-02	Cprob	Conditional probability function of a competing event
2011-05-02	phyext	An extension of some of the classes in phylobase. Tree objects now support subnodes on branches
2011-04-26	cobs	COBS – Constrained B-splines (Sparse matrix based)
2011-04-26	lcmr	lcmr package
2011-04-26	MAPLES	Smoothed age profile estimation
2011-04-26	r2dRue	2d Rain Use Efficience model
2011-04-24	exact2x2	Exact Conditional Tests and Confidence Intervals for 2x2 tables
2011-04-24	fftw	Fast FFT and DCT based on FFTW
2011-04-24	SPECIES	Statistical package for species richness estimation
2011-04-15	bayesGARCH	Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations
2011-04-15	lmmlasso	Linear mixed-effects models with Lasso
2011-04-13	brew	Templating Framework for Report Generation
2011-04-13	mda	Mixture and flexible discriminant analysis
2011-04-13	mrdrc	Model-robust concentration-response analysis
2011-04-13	pvclust	Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling
2011-04-09	NRAIA	Data sets from "Nonlinear Regression Analysis and Its Applications"
2011-04-06	lcda	Latent Class Discriminant Analysis
2011-04-05	faraway	Functions and datasets for books by Julian Faraway
2011-04-05	PottsUtils	Utility Functions of the Potts Models
2011-03-30	scatterplot3d	3D Scatter Plot
2011-03-29	penalizedLDA	Penalized classification using Fisher's linear discriminant
2011-03-26	BaBooN	Bayesian Bootstrap Predictive Mean Matching - Multiple and single imputation for discrete data
2011-03-26	qualV	Qualitative Validation Methods
2011-03-21	FD	Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
2011-03-21	metacor	Meta-analysis of correlation coefficients
2011-03-21	SDaA	Sampling: Design and Analysis
2011-03-20	RC	Reproducible Computing
2011-03-18	approximator	Bayesian prediction of complex computer codes
2011-03-18	calibrator	Bayesian calibration of complex computer codes
2011-03-14	rocplus	ROC, Precision-Recall, Convex Hull and other plots
2011-03-09	compeir	Event-specific incidence rates for competing risks data
2011-03-08	HGLMMM	Hierarchical Generalized Linear Models
2011-03-05	RItools	Randomization inference tools
2011-02-28	TGUICore	Teaching GUI - Core functionality
2011-02-27	PERregress	Regression Functions and Datasets
2011-02-26	fractaldim	Estimation of fractal dimensions
2011-02-24	fpca	Restricted MLE for Functional Principal Components Analysis
2011-02-23	locfdr	Computes local false discovery rates
2011-02-22	MUCflights	Munich Franz-Josef-Strauss Airport Pattern Analysis
2011-02-21	beadarrayMSV	Analysis of Illumina BeadArray SNP data including MSV markers
2011-02-18	Meth27QC	Meth27QC: sample quality analysis, and sample control analysis
2011-02-15	codetools	Code Analysis Tools for R
2011-02-15	RBerkeley	R API to Oracle Berkeley DB
2011-02-11	MLPAstats	MLPA analysis to detect gains and loses in genes
2011-02-11	MMST	DATASETS FROM MMST
2011-02-11	PoMoS	Polynomial (ordinary differential equation) Model Search
2011-02-10	fPortfolio	Rmetrics - Portfolio Selection and Optimization - ebook available at www.rmetrics.org
2011-02-10	MetABEL	meta-analysis of genome-wide SNP association results
2011-02-04	Rdsm	Threads Environment for R
2011-02-03	CRTSize	Sample Size Estimation Functions for Cluster Randomized Trials
2011-01-29	classifly	Explore classification models in high dimensions
2011-01-29	cmaes	Covariance Matrix Adapting Evolutionary Strategy
2011-01-28	meifly	Interactive model exploration using GGobi
2011-01-28	profr	An alternative display for profiling information
2011-01-28	reshape	Flexibly reshape data
2011-01-26	MAT	Multidimensional Adaptive Testing (MAT)
2011-01-25	mvtBinaryEP	Generates Correlated Binary Data
2011-01-25	orth	Multivariate Logistic Regressions Using Orthogonalized Residuals
2011-01-24	outliers	Tests for outliers
2011-01-24	sfa	Stochastic Frontier Analysis
2011-01-23	isotone	Active set and generalized PAVA for isotone optimization
2011-01-23	multxpert	Common Multiple Testing Procedures and Gatekeeping Procedures
2011-01-21	RobRex	Optimally robust influence curves for regression and scale
2011-01-20	darts	Statistical Tools to Analyze Your Darts Game
2011-01-20	grt	General Recognition Theory
2011-01-15	audio	Audio Interface for R
2011-01-15	esotericR	esotericR articles from lemnica.com
2011-01-14	sinartra	A simple web app framework for R, based on sinatra
2011-01-13	SVMMaj	SVMMaj algorithm
2011-01-11	scout	Implements the Scout method for Covariance-Regularized Regression
2011-01-11	topmodel	Implementation of the hydrological model TOPMODEL in R
2011-01-06	mstate	Data preparation, estimation and prediction in multi-state models
2011-01-03	BlakerCI	Blaker's binomial confidence limits
2011-01-03	english	Translate integers into English
2011-01-03	extremevalues	Univariate outlier detection
2011-01-03	factualR	thin wrapper for the Factual.com server API
2011-01-03	neariso	Near-Isotonic Regression
2011-01-03	reliaR	Package for some probability distributions
2010-12-16	orQA	Order Restricted Assessment Of Microarray Titration Experiments
2010-12-06	dcv	Conventional Cross-validation statistics for climate-growth model
2010-12-03	rwm	R Workspace Management
2010-12-02	FitARMA	FitARMA: Fit ARMA or ARIMA using fast MLE algorithm
2010-12-01	tensorA	Advanced tensors arithmetic with named indices
2010-11-29	mfp	Multivariable Fractional Polynomials
2010-11-26	hwriter	HTML Writer - Outputs R objects in HTML format
2010-11-10	TEQR	Target Equavelence Range Design
2010-11-08	RMC	Functions for fitting Markov models
2010-11-05	granova	Graphical Analysis of Variance
2010-11-03	aster2	Aster Models
2010-11-03	vrtest	Variance Ratio tests and other tests for Martigale Difference Hypothesis
2010-10-28	varSelRF	Variable selection using random forests
2010-10-27	inference	Functions to extract inferential values of a fitted model object
2010-10-26	RunuranGUI	A GUI for the UNU.RAN random variate generators
2010-10-20	fANCOVA	Nonparametric Analysis of Covariance
2010-10-04	rocc	ROC based classification
2010-10-03	gcbd	GPU/CPU Benchmarking in Debian-based systems
2010-10-01	genepi	Genetic Epidemiology Design and Inference
2010-09-29	factorQR	Bayesian quantile regression factor models
2010-09-27	svIDE	SciViews GUI API - IDE and code editor functions
2010-09-19	RNCBI	The java ncbi interface to R
2010-09-17	glrt	Generalized Logrank Tests for Interval-censored Failure Time Data
2010-09-17	laercio	Duncan test, Tukey test and Scott-Knott test
2010-09-16	RUnit	R Unit test framework
2010-09-15	relaimpo	Relative importance of regressors in linear models
2010-09-15	rpud	R functions for computation on GPU
2010-09-09	SE.IGE	Standard errors of estimated genetic parametes
2010-09-06	SIS	Sure Independence Screening
2010-09-03	memoise	Memoise functions
2010-09-02	SMCP	Smoothed minimax concave penalization (SMCP) method for genome-wide association studies
2010-09-01	clustsig	Significant Cluster Analysis
2010-08-31	rmac	calculate RMAC or FMAC agreement coefficients
2010-08-25	ecoreg	Ecological regression using aggregate and individual data
2010-08-25	GGMselect	Gaussian Graphs Models selection
2010-08-25	homals	Gifi Methods for Optimal Scaling
2010-08-23	PET	Simulation and Reconstruction of PET Images
2010-08-16	GillespieSSA	Gillespie's Stochastic Simulation Algorithm (SSA)
2010-08-16	lmPerm	Permutation tests for linear models
2010-08-11	classGraph	Construct Graphs of S4 Class Hierarchies
2010-08-10	RLastFM	R interface to last.fm API
2010-08-08	psychometric	Applied Psychometric Theory
2010-08-06	hexView	Viewing Binary Files
2010-08-06	SlimPLS	SlimPLS multivariate feature selection
2010-07-31	MVpower	Give power for a given effect size using multivariate classification methods
2010-07-30	FieldSim	Random fields simulations
2010-07-30	geozoo	Zoo of Geometric Objects
2010-07-29	EnQuireR	A package dedicated to questionnaires
2010-07-29	perm	Exact or Asymptotic permutation tests
2010-07-29	pvclass	P-values for Classification
2010-07-26	stepPlr	L2 penalized logistic regression with a stepwise variable selection
2010-07-24	MCPMod	Design and Analysis of Dose-Finding Studies (see also DoseFinding package)
2010-07-24	pglm	panel generalized linear model
2010-07-24	PolynomF	Polynomials in R
2010-07-24	rvgtest	Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators
2010-07-07	mlmmm	ML estimation under multivariate linear mixed models with missing values
2010-07-05	mutatr	Mutable objects for R
2010-07-01	someKfwer	Controlling the Generalized Familywise Error Rate
2010-06-30	RWebMA	RWebMA
2010-06-26	openNLP	openNLP Interface
2010-06-25	RNCBIAxis2Libs	Axis2 libraries for use in the R environment
2010-06-25	RNCBIEUtilsLibs	EUtils libraries for use in the R environment
2010-06-25	RSearchYJ	RSearchYJ
2010-06-20	ttutils	Utility functions
2010-06-16	VHDClassification	Discrimination/Classification in very high dimension with linear and quadratic rules
2010-05-30	RSQLite.extfuns	Math and String Extension Functions for RSQLite
2010-05-23	SEL	Semiparametric elicitation
2010-05-22	rrules	Generic rule engine for R
2010-05-19	IQCC	Improved Quality Control Charts
2010-05-16	fCertificates	fCertificates - Basics of Certificates and Structured Products Valuation
2010-05-16	scaleboot	Approximately Unbiased P-values via Multiscale Bootstrap
2010-05-07	BayesTree	Bayesian Methods for Tree Based Models
2010-05-07	cgh	Microarray CGH analysis using the Smith-Waterman algorithm
2010-05-07	imprProbEst	Minimum distance estimation in an imprecise probability model
2010-05-06	nanop	tools for nanoparticle simulation and PDF calculation
2010-05-01	elrm	Exact Logistic Regression via MCMC
2010-05-01	ProDenICA	Product Density Estimation for ICA using tilted Gaussian density estimates
2010-04-27	edrGraphicalTools	Provide tools for dimension reduction methods
2010-04-25	BMN	The pseudo-likelihood method for pairwise binary markov networks
2010-04-21	MiscPsycho	Miscellaneous Psychometric Analyses
2010-04-14	identity	Jacquard Condensed Coefficients of Identity
2010-04-14	space	Sparse PArtial Correlation Estimation
2010-04-13	bvls	The Stark-Parker algorithm for bounded-variable least squares
2010-04-13	cellVolumeDist	Functions to fit cell volume distributions and thereby estimate cell growth rates and division times
2010-04-13	lgtdl	A set of methods for longitudinal data objects
2010-04-13	muhaz	Hazard Function Estimation in Survival Analysis
2010-04-13	nws	R functions for NetWorkSpaces and Sleigh
2010-04-12	tpr	Temporal Process Regression
2010-04-11	operators	Additional binary operators for the R language
2010-04-07	som	Self-Organizing Map
2010-04-06	futile.options	Futile options management
2010-04-05	AIM	AIM: adaptive index model
2010-04-03	polycor	Polychoric and Polyserial Correlations
2010-04-02	endogMNP	R Package for Fitting Multinomial Probit Models with Endogenous Selection
2010-04-02	pmlr	Penalized Multinomial Logistic Regression
2010-03-26	ToxLim	Incorporating Ecological Data and Associated Uncertainty in Bioaccumulation Modeling
2010-03-25	AMORE	A MORE flexible neural network package
2010-03-25	nodeHarvest	Node Harvest for regression and classification
2010-03-16	haarfisz	Software to perform Haar Fisz transforms
2010-03-15	micEconSNQP	Symmetric Normalized Quadratic Profit Function
2010-03-09	pmg	Poor Man's GUI
2010-03-09	rsprng	R interface to SPRNG (Scalable Parallel Random Number Generators)
2010-03-08	far	Modelization for Functional AutoRegressive processes
2010-02-28	compHclust	Complementary Hierarchical Clustering
2010-02-23	helloJavaWorld	Hello Java World
2010-02-19	ic.infer	Inequality constrained inference in linear normal situations
2010-02-16	ic50	Standardized high-throughput evaluation of cell-based compound screens
2010-02-11	CausalGAM	Estimation of Causal Effects with Generalized Additive Models
2010-02-07	stam	Spatio-Temporal Analysis and Modelling
2010-02-03	clues	Clustering Method Based on Local Shrinking
2010-02-03	GWRM	GWRM
2010-02-03	scrapeR	Tools for Scraping Data from HTML and XML Documents
2010-02-02	JJcorr	Calculates polychorical correlations for several copula families
2010-02-02	SDDA	Stepwise Diagonal Discriminant Analysis
2010-02-02	symmoments	Symbolic Central Moments of the Multivariate Normal Distribution
2010-02-01	dynamicGraph	dynamicGraph
2010-01-28	fisheyeR	Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
2010-01-26	BoSSA	a Bunch of Structure and Sequence Analysis
2010-01-22	polySegratio	Simulate and test marker dosage for dominant markers in autopolyploids
2010-01-20	nnclust	Nearest-neighbour tools for clustering
2010-01-14	itertools	Iterator Tools
2010-01-13	blockmodeling	An R package for Generalized and classical blockmodeling of valued networks
2010-01-10	HMM	HMM - Hidden Markov Models
2010-01-10	MBA	Multilevel B-spline Approximation
2010-01-06	equivalence	Provides tests and graphics for assessing tests of equivalence
2010-01-04	GSA	Gene set analysis
2010-01-04	marginTree	marginTree: margin trees for high-dimensional classification
2010-01-04	MTSKNN	Multivariate two-sample tests based on K-nearest-neighbors
2010-01-03	mix	Estimation/multiple Imputation for Mixed Categorical and Continuous Data
2010-01-02	aspect	Aspects of Multivariables
2009-12-24	histogram	Construction of regular and irregular histograms with different options for automatic choice of bins
2009-12-17	jointDiag	Joint Approximate Diagonalization of a set of square matrices
2009-12-17	SampleSizeProportions	Calculating sample size requirements when estimating the difference between two binomial proportions
2009-12-16	marginalmodelplots	Marginal Mean Model Plots
2009-12-13	VLMC	VLMC – Variable Length Markov Chains
2009-12-03	datamap	A system for mapping foreign objects to R variables and environments
2009-11-25	LogitNet	Infer network based on binary arrays using regularized logistic regression
2009-11-24	bayescount	Power calculations and Bayesian analysis of count distributions and FECRT data using MCMC
2009-11-22	diffusionMap	Diffusion map
2009-11-22	dvfBm	Discrete variations of a fractional Brownian motion
2009-11-22	dynamicTreeCut	Methods for detection of clusters in hierarchical clustering dendrograms
2009-11-20	waveclock	Time-frequency analysis of cycling cell luminescence data
2009-11-17	DRI	DR-Integrator
2009-11-13	corcounts	Generate correlated count random variables
2009-11-06	cusp	Cusp Catastrophe Model Fitting Using Maximum Likelihood
2009-11-03	MaXact	Exact max-type Cochran-Armitage trend test(CATT)
2009-11-02	prob	Elementary Probability on Finite Sample Spaces
2009-10-28	ant	Version of ant specific to R
2009-10-27	DesignPatterns	Design Patterns in R to build reusable object-oriented software
2009-10-27	rela	Item Analysis Package with Standard Errors
2009-10-26	stochmod	Stochastic Modeling
2009-10-20	RelativeRisk	Relative Risk
2009-10-16	adaptTest	Adaptive two-stage tests
2009-10-15	bcv	Cross-Validation for the SVD (Bi-Cross-Validation)
2009-10-15	clv	Cluster Validation Techniques
2009-10-14	RMTstat	Distributions, Statistics and Tests derived from Random Matrix Theory
2009-10-12	compare	Comparing Objects for Differences
2009-10-12	grouped	Regression Analysis of Grouped and Coarse Data
2009-10-11	moduleColor	Basic module functions
2009-10-11	packClassic	Toy example of Pack Classic
2009-10-08	PKtools	unified computational interfaces for pop PK
2009-10-06	gamesNws	Playing games using a NWS Server
2009-10-06	rgcvpack	R Interface for GCVPACK Fortran Package
2009-09-28	EQL	Extended-Quasi-Likelihood-Function (EQL)
2009-09-23	HyperbolicDist	The hyperbolic distribution
2009-09-06	its	Irregular Time Series
2009-08-30	km.ci	Confidence intervals for the Kaplan-Meier estimator
2009-08-13	pedigreemm	Pedigree-based mixed-effects models
2009-08-13	plan	Tools for project planning
2009-08-13	random	True random numbers using random.org
2009-08-08	crantastic	Various R tools for http://crantastic.org/
2009-08-06	sde	Simulation and Inference for Stochastic Differential Equations
2009-08-02	latdiag	Draws diagrams useful for checking latent scales
2009-07-26	packdep	Mapping dependencies among R packages
2009-07-24	ClinicalRobustPriors	Robust Bayesian Priors in Clinical Trials: An R Package for Practitioners
2009-07-22	safeBinaryRegression	Safe Binary Regression
2009-06-29	PearsonICA	Independent component analysis using score functions from the Pearson system
2009-06-29	spatcounts	Spatial count regression
2009-06-24	Daim	Diagnostic accuracy of classification models
2009-06-19	pspearman	Spearman's rank correlation test
2009-06-16	mar1s	Multiplicative AR(1) with Seasonal Processes
2009-06-14	svcm	2d and 3d Space-Varying Coefficient Models
2009-06-08	HybridMC	Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques
2009-06-07	cghFLasso	Detecting hot spot on CGH array data with fused lasso regression
2009-06-07	sugaR	Plots to help optimising diabetes therapy
2009-06-04	bootStepAIC	Bootstrap stepAIC
2009-05-26	binom	Binomial Confidence Intervals For Several Parameterizations
2009-05-24	lpc	Lassoed principal components for testing significance of features
2009-05-18	odfWeave.survey	Support for odfWeave on the survey package
2009-05-05	leaps	regression subset selection
2009-05-05	luca	Likelihood inference from case-control data Under Covariate Assumptions (LUCA)
2009-05-05	SEMModComp	Model Comparisons for SEM
2009-04-28	mcsm	Functions for Monte Carlo Methods with R
2009-04-27	graphicsQC	Quality Control for Graphics in R
2009-04-23	binarySimCLF	Simulates Correlated Binary Data
2009-04-22	RDS	R Functions for Respondent-Driven Sampling
2009-04-19	localdepth	Local Depth
2009-04-15	uniCox	Univarate shrinkage prediction in the Cox model
2009-04-04	rwt	Rice Wavelet Toolbox wrapper
2009-03-24	ars	Adaptive Rejection Sampling
2009-03-23	plotpc	Plot principal component histograms around a scatter plot
2009-03-19	mixRasch	Mixture Rasch Models with JMLE
2009-03-08	WhatIf	WhatIf: Software for Evaluating Counterfactuals
2009-03-01	clusterRepro	Reproducibility of gene expression clusters
2009-02-28	geonames	Interface to www.geonames.org web service
2009-02-25	hdeco	Hierarchical DECOmposition of Entropy for Categorical Map Comparisons
2009-02-25	sac	Semiparametric Analysis of Changepoint
2009-02-24	GroupSeq	Performing computations related to group sequential designs
2009-02-24	spe	Stochastic Proximity Embedding
2009-02-20	grade	Provides functions for matching student-answers to teacher answers for a variety of data types
2009-02-10	rhosp	Side effect risks in hospital : simulation and estimation
2009-02-04	hints	Provide hints on what to do next
2009-02-03	GridR	Executes functions on remote hosts, clusters or grids
2009-02-03	truncreg	Truncated Regression Models
2009-02-01	CreditMetrics	Functions for calculating the CreditMetrics risk model
2009-02-01	Reliability	Functions for estimating parameters in software reliability models
2009-01-30	ETC	Equivalence to control
2009-01-29	convexHaz	Nonparametric MLE/LSE of convex hazard
2009-01-29	kin.cohort	Analysis of kin-cohort studies
2009-01-17	remMap	Regularized Multivariate Regression for Identifying Master Predictors
2008-12-16	mixPHM	Mixtures of proportional hazard models
2008-11-08	foba	greedy variable selection
2008-11-06	beanplot	Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot)
2008-10-28	kzs	Kolmogorov-Zurbenko Spatial Smoothing and Applications
2008-10-02	expert	Modeling without data using expert opinion
2008-09-28	goalprog	Weighted and lexicographical goal programming and optimization
2008-09-08	pack	Convert values to/from raw vectors
2008-09-06	dice	Calculate probabilities of various dice-rolling events
2008-09-03	CTT	Classical Test Theory Functions
2008-09-03	hlr	Hidden Logistic Regression
2008-08-13	RM2	Revenue Management and Pricing Package
2008-08-07	loglognorm	Double log normal distribution functions
2008-07-28	subplex	Subplex optimization algorithm
2008-07-16	bark	Bayesian Additive Regresssion Kernels
2008-06-23	SASPECT	Significant AnalysiS of PEptide CounTs
2008-06-09	LDtests	Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium
2008-05-02	boa	Bayesian Output Analysis Program (BOA) for MCMC
2008-05-02	simpleboot	Simple Bootstrap Routines
2008-04-29	poilog	Poisson lognormal and bivariate Poisson lognormal distribution
2008-04-08	knorm	Microarray Data From Multiple Biologically Interrelated Experiments
2007-11-20	signalextraction	Real-Time Signal Extraction (Direct Filter Approach)
2007-11-06	mFilter	Miscellaneous time series filters
2007-10-16	fuzzyFDR	Exact calculation of fuzzy decision rules for multiple testing
2007-08-26	Defaults	Create Global Function Defaults
2007-08-07	plRasch	Log Linear by Linear Asscociation models
2007-06-21	lancet.iraqmortality	Surveys of Iraq Mortality Published in The Lancet
2006-08-19	powell	Powell's UObyQA algorithm
2006-06-19	cramer	Multivariate nonparametric Cramer-Test for the two-sample-problem
2006-05-24	allelic	A fast, unbiased and exact allelic exact test
2006-05-23	ldbounds	Lan-DeMets Method for Group Sequential Boundaries
2006-03-30	BayesValidate	BayesValidate Package
2006-03-15	coxrobust	Robust Estimation in Cox Model
2005-10-29	vioplot	Violin plot