Bayesian Transmission Models

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Documentation for package ‘bayestransmission’ version 0.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

ABXInUnitParams	In Unit Parameters
AbxParams	Antibiotic Parameters
AbxRateParams	Antibiotic Administration Rate Parameters
ClearanceParams	Clearance Parameters
ClinicalTestParams	Random Testing Parameter Set
CodeToEvent	Convert coded events to string events
EventToCode	Convert string events to coded events
getCppModelParams	Extract Model Parameters from C++ Model Object
getExposureFlags	Get compilation flags for exposed classes
InsituParams	InSitu Parameters
InUnitParams	In Unit Parameters
LinearAbxAcquisitionParams	Linear Antibiotic Acquisition Parameters
LinearAbxModel	Model Parameters for a Log Normal Model
LogNormalAcquisitionParams	Log-Normal Acquisition Parameters
LogNormalModelParams	Model Parameters for a Log Normal Model
mcmc_to_dataframe	Convert MCMC Parameters to Data Frame
newCppModel	Create a new C++ model object with parameters
newModelExport	Create a new model object
OutOfUnitInfectionParams	Out of Unit Infection Parameters
Param	Construct a parameter with a prior, weight and an update flag.
ParamWRate	Specify a random testing parameter with a rate.
ProgressionParams	Progression Parameters
RandomTestParams	Random Testing Parameter Set
runMCMC	Run Bayesian Transmission MCMC
simulated.data	Simulated Transmission Data
simulated.data_sorted	Simulated Transmission Data (Sorted)
SurveillanceTestParams	Surveillance Test Parameters