* using log directory 'd:/Rcompile/CRANpkg/local/4.4/pangaear.Rcheck' * using R version 4.4.3 (2025-02-28 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'pangaear/DESCRIPTION' ... OK * this is package 'pangaear' version '1.1.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'pangaear' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [2s] OK * checking whether startup messages can be suppressed ... [2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [3s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [8s] ERROR Running 'test-all.R' [7s] Running the tests in 'tests/test-all.R' failed. Complete output: > library("testthat") > test_check("pangaear") Loading required package: pangaear [ FAIL 6 | WARN 1 | SKIP 8 | PASS 31 ] ══ Skipped tests (8) ═══════════════════════════════════════════════════════════ • On CRAN (8): 'test-oai_functions.R:67:3', 'test-pg_data.R:7:3', 'test-pg_data.R:25:3', 'test-pg_data.R:32:3', 'test-pg_data.R:50:3', 'test-pg_data.R:78:3', 'test-pg_search.r:53:3', 'test-pg_search_es.R:29:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-oai_functions.R:5:5'): pg_identify() works ───────────────────── Error in `path_to_connection(x)`: '' does not exist in current working directory ('d:/Rcompile/CRANpkg/local/4.4/pangaear.Rcheck/tests/testthat'). Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-oai_functions.R:4:3 2. │ └─cassette$call_block(...) 3. └─pangaear::pg_identify() at test-oai_functions.R:5:5 4. └─oai::id(url = baseoai(), ...) 5. ├─plyr::rbind.fill(lapply(url, id_, as = as, ...)) 6. └─base::lapply(url, id_, as = as, ...) 7. └─oai (local) FUN(X[[i]], ...) 8. ├─oai:::get_headers(xml_children(xml2::read_xml(tt))[[3]]) 9. │ ├─base::lapply(...) 10. │ └─xml2::xml_children(m) 11. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE)) 12. ├─xml2::xml_children(xml2::read_xml(tt)) 13. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE)) 14. ├─xml2::read_xml(tt) 15. └─xml2:::read_xml.character(tt) 16. └─xml2:::path_to_connection(x) 17. └─xml2:::check_path(path) 18. └─cli::cli_abort(msg, call = call) 19. └─rlang::abort(...) ── Error ('test-oai_functions.R:14:5'): pg_list_sets() works ─────────────────── Error in `while_oai(url, args, token, as, ...)`: cannot parse downloaded XML, dumped raw XML to file .\oaidump_2025-07-23_16-07-10.7229871df68696a5ed0xml Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-oai_functions.R:13:3 2. │ └─cassette$call_block(...) 3. └─pangaear::pg_list_sets() at test-oai_functions.R:14:5 4. └─oai::list_sets(url = baseoai(), token = token, as = as, ...) 5. └─oai:::while_oai(url, args, token, as, ...) ── Error ('test-oai_functions.R:33:5'): pg_list_metadata_formats() works ─────── Error in `path_to_connection(x)`: '' does not exist in current working directory ('d:/Rcompile/CRANpkg/local/4.4/pangaear.Rcheck/tests/testthat'). Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-oai_functions.R:32:3 2. │ └─cassette$call_block(...) 3. └─pangaear::pg_list_metadata_formats() at test-oai_functions.R:33:5 4. └─oai::list_metadataformats(url = baseoai(), ...) 5. └─oai:::one_mf(id, url, ...) 6. ├─xml2::read_xml(out) 7. └─xml2:::read_xml.character(out) 8. └─xml2:::path_to_connection(x) 9. └─xml2:::check_path(path) 10. └─cli::cli_abort(msg, call = call) 11. └─rlang::abort(...) ── Error ('test-oai_functions.R:55:5'): pg_get_record() works ────────────────── Error in `path_to_connection(x)`: '' does not exist in current working directory ('d:/Rcompile/CRANpkg/local/4.4/pangaear.Rcheck/tests/testthat'). Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-oai_functions.R:54:3 2. │ └─cassette$call_block(...) 3. └─pangaear::pg_get_record(identifier = "oai:pangaea.de:doi:10.1594/PANGAEA.788382") at test-oai_functions.R:55:5 4. └─oai::get_records(...) 5. ├─stats::setNames(...) 6. └─base::lapply(...) 7. └─oai (local) FUN(X[[i]], ...) 8. ├─xml2::read_xml(tt) 9. └─xml2:::read_xml.character(tt) 10. └─xml2:::path_to_connection(x) 11. └─xml2:::check_path(path) 12. └─cli::cli_abort(msg, call = call) 13. └─rlang::abort(...) ── Error ('test-pg_identify.R:5:5'): pg_identify works ───────────────────────── Error in `path_to_connection(x)`: '' does not exist in current working directory ('d:/Rcompile/CRANpkg/local/4.4/pangaear.Rcheck/tests/testthat'). Backtrace: ▆ 1. ├─vcr::use_cassette(...) at test-pg_identify.R:4:3 2. │ └─cassette$call_block(...) 3. └─pangaear::pg_identify() at test-pg_identify.R:5:5 4. └─oai::id(url = baseoai(), ...) 5. ├─plyr::rbind.fill(lapply(url, id_, as = as, ...)) 6. └─base::lapply(url, id_, as = as, ...) 7. └─oai (local) FUN(X[[i]], ...) 8. ├─oai:::get_headers(xml_children(xml2::read_xml(tt))[[3]]) 9. │ ├─base::lapply(...) 10. │ └─xml2::xml_children(m) 11. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE)) 12. ├─xml2::xml_children(xml2::read_xml(tt)) 13. │ └─xml2:::nodeset_apply(x, function(x) .Call(node_children, x, TRUE)) 14. ├─xml2::read_xml(tt) 15. └─xml2:::read_xml.character(tt) 16. └─xml2:::path_to_connection(x) 17. └─xml2:::check_path(path) 18. └─cli::cli_abort(msg, call = call) 19. └─rlang::abort(...) ── Failure ('test-pg_search.r:20:3'): pg_search works and stuff, and stuff and things, also, it works ── aa$supplement_to inherits from `'logical'` not `'character'`. [ FAIL 6 | WARN 1 | SKIP 8 | PASS 31 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [1s] OK * checking PDF version of manual ... [18s] OK * checking HTML version of manual ... [3s] OK * DONE Status: 1 ERROR