* using log directory 'd:/Rcompile/CRANpkg/local/4.4/rbioacc.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'rbioacc/DESCRIPTION' ... OK
* this is package 'rbioacc' version '1.2.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rbioacc' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 13.3.0'
* checking C++ specification ... OK
  Not all R platforms support C++17
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s] OK
* checking whether the package can be loaded with stated dependencies ... [4s] OK
* checking whether the package can be unloaded cleanly ... [4s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s] OK
* checking whether the namespace can be unloaded cleanly ... [4s] OK
* checking loading without being on the library search path ... [9s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [10s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [34s] ERROR
  Running 'testthat.R' [34s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(rbioacc)
  > 
  > test_check("rbioacc")
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000145 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.45 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.007 seconds (Warm-up)
  Chain 1:                0.004 seconds (Sampling)
  Chain 1:                0.011 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2.6e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.26 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: WARNING: No variance estimation is
  Chain 2:          performed for num_warmup < 20
  Chain 2: 
  Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 2: 
  Chain 2:  Elapsed Time: 0.006 seconds (Warm-up)
  Chain 2:                0.01 seconds (Sampling)
  Chain 2:                0.016 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
  Chain 1: Rejecting initial value:
  Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 1:   Stan can't start sampling from this initial value.
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000162 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.62 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.011 seconds (Warm-up)
  Chain 1:                0.01 seconds (Sampling)
  Chain 1:                0.021 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: 
  Chain 2: Gradient evaluation took 0.000148 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 1.48 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: WARNING: No variance estimation is
  Chain 2:          performed for num_warmup < 20
  Chain 2: 
  Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 2: 
  Chain 2:  Elapsed Time: 0.012 seconds (Warm-up)
  Chain 2:                0.017 seconds (Sampling)
  Chain 2:                0.029 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000123 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.23 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.007 seconds (Warm-up)
  Chain 1:                0.002 seconds (Sampling)
  Chain 1:                0.009 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 5.9e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.59 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: WARNING: No variance estimation is
  Chain 2:          performed for num_warmup < 20
  Chain 2: 
  Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 2: 
  Chain 2:  Elapsed Time: 0.015 seconds (Warm-up)
  Chain 2:                0.017 seconds (Sampling)
  Chain 2:                0.032 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 2.8e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.28 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.006 seconds (Warm-up)
  Chain 1:                0.001 seconds (Sampling)
  Chain 1:                0.007 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.8e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.18 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: WARNING: No variance estimation is
  Chain 2:          performed for num_warmup < 20
  Chain 2: 
  Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 2: 
  Chain 2:  Elapsed Time: 0.001 seconds (Warm-up)
  Chain 2:                0.001 seconds (Sampling)
  Chain 2:                0.002 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
  Chain 1: Rejecting initial value:
  Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 1:   Stan can't start sampling from this initial value.
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000161 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.61 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.014 seconds (Warm-up)
  Chain 1:                0.018 seconds (Sampling)
  Chain 1:                0.032 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: 
  Chain 2: Gradient evaluation took 0.000255 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 2.55 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: WARNING: No variance estimation is
  Chain 2:          performed for num_warmup < 20
  Chain 2: 
  Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 2: 
  Chain 2:  Elapsed Time: 0.01 seconds (Warm-up)
  Chain 2:                0.011 seconds (Sampling)
  Chain 2:                0.021 seconds (Total)
  Chain 2: 
  Loading required namespace: coda
  Failed with error:  'there is no package called 'coda''
  Scale for fill is already present.
  Adding another scale for fill, which will replace the existing scale.
  Loading required namespace: coda
  Failed with error:  'there is no package called 'coda''
  Scale for fill is already present.
  Adding another scale for fill, which will replace the existing scale.
  Loading required namespace: coda
  Failed with error:  'there is no package called 'coda''
  Loading required namespace: coda
  Failed with error:  'there is no package called 'coda''
  Loading required namespace: coda
  Failed with error:  'there is no package called 'coda''
  Loading required namespace: coda
  Failed with error:  'there is no package called 'coda''
  Loading required namespace: coda
  Failed with error:  'there is no package called 'coda''
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 4.1e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.41 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.012 seconds (Warm-up)
  Chain 1:                0.001 seconds (Sampling)
  Chain 1:                0.013 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.2 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: WARNING: No variance estimation is
  Chain 2:          performed for num_warmup < 20
  Chain 2: 
  Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 2: 
  Chain 2:  Elapsed Time: 0.001 seconds (Warm-up)
  Chain 2:                0.002 seconds (Sampling)
  Chain 2:                0.003 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
  Chain 1: Rejecting initial value:
  Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 1:   Stan can't start sampling from this initial value.
  Chain 1: Rejecting initial value:
  Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 1:   Stan can't start sampling from this initial value.
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000156 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.56 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.01 seconds (Warm-up)
  Chain 1:                0.003 seconds (Sampling)
  Chain 1:                0.013 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: 
  Chain 2: Gradient evaluation took 0.00013 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 1.3 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: WARNING: No variance estimation is
  Chain 2:          performed for num_warmup < 20
  Chain 2: 
  Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 2: 
  Chain 2:  Elapsed Time: 0.009 seconds (Warm-up)
  Chain 2:                0.011 seconds (Sampling)
  Chain 2:                0.02 seconds (Total)
  Chain 2: 
  Loading required namespace: coda
  Failed with error:  'there is no package called 'coda''
  Scale for colour is already present.
  Adding another scale for colour, which will replace the existing scale.
  Loading required namespace: coda
  Failed with error:  'there is no package called 'coda''
  Scale for colour is already present.
  Adding another scale for colour, which will replace the existing scale.
  Loading required namespace: coda
  Failed with error:  'there is no package called 'coda''
  Scale for colour is already present.
  Adding another scale for colour, which will replace the existing scale.
  Loading required namespace: coda
  Failed with error:  'there is no package called 'coda''
  Scale for colour is already present.
  Adding another scale for colour, which will replace the existing scale.
  Loading required namespace: coda
  Failed with error:  'there is no package called 'coda''
  Scale for colour is already present.
  Adding another scale for colour, which will replace the existing scale.
  Loading required namespace: coda
  Failed with error:  'there is no package called 'coda''
  Scale for colour is already present.
  Adding another scale for colour, which will replace the existing scale.
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 2.8e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.28 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.006 seconds (Warm-up)
  Chain 1:                0.001 seconds (Sampling)
  Chain 1:                0.007 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 2e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.2 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: WARNING: No variance estimation is
  Chain 2:          performed for num_warmup < 20
  Chain 2: 
  Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 2: 
  Chain 2:  Elapsed Time: 0.006 seconds (Warm-up)
  Chain 2:                0.006 seconds (Sampling)
  Chain 2:                0.012 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 2.5e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.25 seconds.
  Chain 3: Adjust your expectations accordingly!
  Chain 3: 
  Chain 3: 
  Chain 3: WARNING: No variance estimation is
  Chain 3:          performed for num_warmup < 20
  Chain 3: 
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.002 seconds (Warm-up)
  Chain 3:                0.008 seconds (Sampling)
  Chain 3:                0.01 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 2.5e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.25 seconds.
  Chain 4: Adjust your expectations accordingly!
  Chain 4: 
  Chain 4: 
  Chain 4: WARNING: No variance estimation is
  Chain 4:          performed for num_warmup < 20
  Chain 4: 
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.006 seconds (Warm-up)
  Chain 4:                0.001 seconds (Sampling)
  Chain 4:                0.007 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000297 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 2.97 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.007 seconds (Warm-up)
  Chain 1:                0.002 seconds (Sampling)
  Chain 1:                0.009 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: 
  Chain 2: Gradient evaluation took 0.000228 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 2.28 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: WARNING: No variance estimation is
  Chain 2:          performed for num_warmup < 20
  Chain 2: 
  Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 2: 
  Chain 2:  Elapsed Time: 0.014 seconds (Warm-up)
  Chain 2:                0.011 seconds (Sampling)
  Chain 2:                0.025 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 3).
  Chain 3: Rejecting initial value:
  Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 3:   Stan can't start sampling from this initial value.
  Chain 3: Rejecting initial value:
  Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 3:   Stan can't start sampling from this initial value.
  Chain 3: Rejecting initial value:
  Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 3:   Stan can't start sampling from this initial value.
  Chain 3: Rejecting initial value:
  Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 3:   Stan can't start sampling from this initial value.
  Chain 3: Rejecting initial value:
  Chain 3:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 3:   Stan can't start sampling from this initial value.
  Chain 3: 
  Chain 3: Gradient evaluation took 0.000266 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 2.66 seconds.
  Chain 3: Adjust your expectations accordingly!
  Chain 3: 
  Chain 3: 
  Chain 3: WARNING: No variance estimation is
  Chain 3:          performed for num_warmup < 20
  Chain 3: 
  Chain 3: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.012 seconds (Warm-up)
  Chain 3:                0.013 seconds (Sampling)
  Chain 3:                0.025 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 4).
  Chain 4: Rejecting initial value:
  Chain 4:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 4:   Stan can't start sampling from this initial value.
  Chain 4: Rejecting initial value:
  Chain 4:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 4:   Stan can't start sampling from this initial value.
  Chain 4: 
  Chain 4: Gradient evaluation took 0.000158 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 1.58 seconds.
  Chain 4: Adjust your expectations accordingly!
  Chain 4: 
  Chain 4: 
  Chain 4: WARNING: No variance estimation is
  Chain 4:          performed for num_warmup < 20
  Chain 4: 
  Chain 4: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.009 seconds (Warm-up)
  Chain 4:                0.011 seconds (Sampling)
  Chain 4:                0.02 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000127 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.27 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.009 seconds (Warm-up)
  Chain 1:                0.01 seconds (Sampling)
  Chain 1:                0.019 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 6.9e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.69 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: WARNING: No variance estimation is
  Chain 2:          performed for num_warmup < 20
  Chain 2: 
  Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.012 seconds (Warm-up)
  Chain 2:                0.003 seconds (Sampling)
  Chain 2:                0.015 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 3).
  Chain 3: 
  Chain 3: Gradient evaluation took 6.9e-05 seconds
  Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.69 seconds.
  Chain 3: Adjust your expectations accordingly!
  Chain 3: 
  Chain 3: 
  Chain 3: WARNING: No variance estimation is
  Chain 3:          performed for num_warmup < 20
  Chain 3: 
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  Chain 3: 
  Chain 3:  Elapsed Time: 0.009 seconds (Warm-up)
  Chain 3:                0.01 seconds (Sampling)
  Chain 3:                0.019 seconds (Total)
  Chain 3: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 4).
  Chain 4: 
  Chain 4: Gradient evaluation took 6.8e-05 seconds
  Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.68 seconds.
  Chain 4: Adjust your expectations accordingly!
  Chain 4: 
  Chain 4: 
  Chain 4: WARNING: No variance estimation is
  Chain 4:          performed for num_warmup < 20
  Chain 4: 
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  Chain 4: 
  Chain 4:  Elapsed Time: 0.007 seconds (Warm-up)
  Chain 4:                0.01 seconds (Sampling)
  Chain 4:                0.017 seconds (Total)
  Chain 4: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 2.7e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.27 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.012 seconds (Warm-up)
  Chain 1:                0.007 seconds (Sampling)
  Chain 1:                0.019 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 4.5e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.45 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: WARNING: No variance estimation is
  Chain 2:          performed for num_warmup < 20
  Chain 2: 
  Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.003 seconds (Warm-up)
  Chain 2:                0.001 seconds (Sampling)
  Chain 2:                0.004 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
  Chain 1: Rejecting initial value:
  Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 1:   Stan can't start sampling from this initial value.
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000283 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 2.83 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.014 seconds (Warm-up)
  Chain 1:                0.017 seconds (Sampling)
  Chain 1:                0.031 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: 
  Chain 2: Gradient evaluation took 0.000247 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 2.47 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: WARNING: No variance estimation is
  Chain 2:          performed for num_warmup < 20
  Chain 2: 
  Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 2: 
  Chain 2:  Elapsed Time: 0.012 seconds (Warm-up)
  Chain 2:                0.003 seconds (Sampling)
  Chain 2:                0.015 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 3e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.3 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.006 seconds (Warm-up)
  Chain 1:                0.001 seconds (Sampling)
  Chain 1:                0.007 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 1.9e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.19 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: WARNING: No variance estimation is
  Chain 2:          performed for num_warmup < 20
  Chain 2: 
  Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 2: 
  Chain 2:  Elapsed Time: 0.001 seconds (Warm-up)
  Chain 2:                0.002 seconds (Sampling)
  Chain 2:                0.003 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
  Chain 1: Rejecting initial value:
  Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 1:   Stan can't start sampling from this initial value.
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000286 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 2.86 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 1: 
  Chain 1:  Elapsed Time: 0.015 seconds (Warm-up)
  Chain 1:                0.016 seconds (Sampling)
  Chain 1:                0.031 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: 
  Chain 2: Gradient evaluation took 0.000209 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 2.09 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: WARNING: No variance estimation is
  Chain 2:          performed for num_warmup < 20
  Chain 2: 
  Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 2: 
  Chain 2:  Elapsed Time: 0.015 seconds (Warm-up)
  Chain 2:                0.018 seconds (Sampling)
  Chain 2:                0.033 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 2.6e-05 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.26 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.013 seconds (Warm-up)
  Chain 1:                0.008 seconds (Sampling)
  Chain 1:                0.021 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
  Chain 2: 
  Chain 2: Gradient evaluation took 3.3e-05 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.33 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: WARNING: No variance estimation is
  Chain 2:          performed for num_warmup < 20
  Chain 2: 
  Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
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  Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 2: 
  Chain 2:  Elapsed Time: 0.006 seconds (Warm-up)
  Chain 2:                0.004 seconds (Sampling)
  Chain 2:                0.01 seconds (Total)
  Chain 2: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.000228 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 2.28 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
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  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.009 seconds (Warm-up)
  Chain 1:                0.002 seconds (Sampling)
  Chain 1:                0.011 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'TK' NOW (CHAIN 2).
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: Rejecting initial value:
  Chain 2:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 2:   Stan can't start sampling from this initial value.
  Chain 2: 
  Chain 2: Gradient evaluation took 0.000148 seconds
  Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 1.48 seconds.
  Chain 2: Adjust your expectations accordingly!
  Chain 2: 
  Chain 2: 
  Chain 2: WARNING: No variance estimation is
  Chain 2:          performed for num_warmup < 20
  Chain 2: 
  Chain 2: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 2: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 2: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 2: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 2: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 2: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 2: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 2: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 2: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 2: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 2: 
  Chain 2:  Elapsed Time: 0.009 seconds (Warm-up)
  Chain 2:                0.002 seconds (Sampling)
  Chain 2:                0.011 seconds (Total)
  Chain 2: 
  [ FAIL 5 | WARN 86 | SKIP 9 | PASS 75 ]
  
  ══ Skipped tests (9) ═══════════════════════════════════════════════════════════
  • On CRAN (6): 'test-elim.R:3:3', 'test-fit.R:3:3', 'test-fitODE.R:3:3',
    'test-predict.R:3:3', 'test-predict.R:61:3', 'test-predict_manual.R:3:3'
  • empty test (3): 'test-PP.R:1:1', 'test-correlation.R:1:1', 'test-ppc.R:1:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-correlation.R:28:5'): corrPlot ───────────────────────────────
  all(class(plt_MGS) == c("gg", "ggmatrix")) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-correlation.R:29:5'): corrPlot ───────────────────────────────
  all(class(plt_MGS_det) == c("gg", "ggmatrix")) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-correlation.R:30:5'): corrPlot ───────────────────────────────
  all(class(plt_MGSG) == c("gg", "ggmatrix")) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-correlation.R:31:5'): corrPlot ───────────────────────────────
  all(class(plt_MGSG_det) == c("gg", "ggmatrix")) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-correlation.R:32:5'): corrPlot ───────────────────────────────
  all(class(plt_MGSG_sto) == c("gg", "ggmatrix")) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 5 | WARN 86 | SKIP 9 | PASS 75 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [48s] OK
* checking PDF version of manual ... [17s] OK
* checking HTML version of manual ... [6s] OK
* DONE
Status: 1 ERROR, 1 NOTE