calculate_abundance_stats	pathway_daa
calculate_rank_metric	calculate_rank_metric
calculate_smart_text_size	calculate_smart_text_size
color_themes	color_themes
compare_daa_results	compare_daa_results
compare_gsea_daa	compare_gsea_daa
compare_metagenome_results	compare_metagenome_results
create_basic_go_mapping	create_basic_go_mapping
create_dendrogram	create_dendrogram
create_empty_plot	create_empty_plot
create_gradient_colors	create_gradient_colors
create_heatmap_plot	create_heatmap_plot
create_legend_theme	create_legend_theme
create_network_plot	create_network_plot
create_pathway_class_theme	create_pathway_class_theme
daa_annotated_results_df	daa_annotated_results_df
daa_results_df	daa_results_df
format_pvalue_smart	format_pvalue_smart
generate_nested_colors	generate_nested_colors
get_available_themes	get_available_themes
get_color_theme	get_color_theme
get_significance_colors	get_significance_colors
get_significance_stars	get_significance_stars
ggpicrust2	ggpicrust2
ggpicrust2_extended	ggpicrust2_extended
gsea_pathway_annotation	gsea_pathway_annotation
import_MicrobiomeAnalyst_daa_results	import_MicrobiomeAnalyst_daa_results
kegg_abundance	kegg_abundance
ko2kegg_abundance	ko2kegg_abundance
ko_abundance	ko_abundance
legend_annotation_utils	legend_annotation_utils
metacyc_abundance	metacyc_abundance
metadata	metadata
pathway_annotation	pathway_annotation
pathway_daa	pathway_daa
pathway_errorbar	pathway_errorbar
pathway_errorbar_table	pathway_errorbar_table
pathway_gsea	pathway_gsea
pathway_heatmap	pathway_heatmap
pathway_pca	pathway_pca
prepare_gene_sets	prepare_gene_sets
preview_color_theme	preview_color_theme
resolve_annotation_overlaps	resolve_annotation_overlaps
run_fgsea	run_fgsea
safe_extract	safe_extract
smart_color_selection	smart_color_selection
validate_abundance_data	validate_abundance_data
validate_group_sizes	validate_group_sizes
visualize_gsea	visualize_gsea
