Package: AbSolution
Title: Interactive Feature-Based Analysis of AIRR-Seq Data
Version: 1.0.1
Authors@R: c(
    person("Rodrigo", "García-Valiente", , "r.garciavaliente@amsterdamumc.nl", role = c("cre", "aut"),
           comment = c(ORCID = "0000-0003-0444-5587", email2 = "rodrigo.garcia.valiente+absolution@email.com")),
    person("Charisios", "Triantafyllou", , "charisios.triantafyllou@genyo.es", role = "aut",
           comment = c(ORCID = "0000-0002-0283-141X")),
    person("Antoine", "van Kampen", , "a.h.c.vankampen@amsterdamumc.nl", role = c("aut", "ths"),
           comment = c(ORCID = "0000-0003-1025-7232"))
  )
Description: An interactive framework for the exploration and analysis of
    adaptive immune receptor repertoire sequencing (AIRR-seq) data. It
    enables large-scale computation and integrated analysis of
    sequence-derived features, including physicochemical properties, amino
    acid descriptor sets, sequence motifs, compositional patterns, and
    somatic hypermutation metrics. The application supports multiscale
    analysis across sequences, clones, and repertoires, with interactive
    visualizations and statistical feature selection. 'AbSolution' also
    facilitates reproducible research by enabling structured export of
    data, code, parameters, and computational environments.  See
    <https://github.com/EDS-Bioinformatics-Laboratory/AbSolution> for more
    details.
License: GPL (>= 3)
URL: https://github.com/EDS-Bioinformatics-Laboratory/AbSolution,
        https://eds-bioinformatics-laboratory.github.io/AbSolution/
BugReports: https://github.com/EDS-Bioinformatics-Laboratory/AbSolution/issues
Depends: R (>= 4.4.0)
Imports: alakazam, attachment, benchmarkme, bigassertr, bigparallelr,
        bigstatsr, Biostrings, bs4Dash, callr, colourpicker, config (>=
        0.3.2), dashboardthemes, data.table, dockerfiler, doParallel,
        dplyr, DT, foreach, fresh, fs, ggplot2, golem (>= 0.4.1),
        grDevices, htmlwidgets, IRanges, iterors, knitr, parallel,
        Peptides, plotly, pwalign, reactable, rlang, rmarkdown, seqinr,
        shiny (>= 1.7.4), shinycssloaders, shinyFiles, shinyjs,
        shinymanager, shinymeta, shinythemes, shinyWidgets, sortable,
        stats, stringdist, stringr, sunburstR, tools, umap, upsetjs,
        utils, viridis, xfun
Additional_repositories: https://bioconductor.org/packages/release/bioc
Suggests: testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-US
RoxygenNote: 7.3.3
NeedsCompilation: no
Packaged: 2026-04-26 10:46:27 UTC; rgarcia
Author: Rodrigo García-Valiente [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-0444-5587>, email2:
    rodrigo.garcia.valiente+absolution@email.com),
  Charisios Triantafyllou [aut] (ORCID:
    <https://orcid.org/0000-0002-0283-141X>),
  Antoine van Kampen [aut, ths] (ORCID:
    <https://orcid.org/0000-0003-1025-7232>)
Maintainer: Rodrigo García-Valiente <r.garciavaliente@amsterdamumc.nl>
Repository: CRAN
Date/Publication: 2026-04-27 08:50:09 UTC
Built: R 4.5.3; ; 2026-07-06 05:39:53 UTC; windows
