# Automated Soil Profile Classification per WRB 2022, 'SiBCS' 5 and USDA Soil Taxonomy 13

## Documentation for package ‘soilKey’ version 0.9.184

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.
- Package NEWS.

## Help Pages

A B C D E F G H I K L M N O P R S T U V W Y misc

## -- A --

abrupt_textural_difference | Abrupt textural difference (WRB 2022 Ch 3.2.1)
acrisol | Acrisol RSG diagnostic (WRB 2022)
aeolic_material | Aeolic material (WRB 2022 Ch 3.3.1)
albeluvic_glossae | Albeluvic glossae (WRB 2022 Ch 3.2.2)
albic | Albic horizon (WRB 2022)
alisol | Alisol RSG diagnostic (WRB 2022)
andic_properties | Andic properties (WRB 2022)
andosol | Andosol RSG gate (WRB 2022 Ch 4, p 104)
annotate_wrb_from_usda | Annotate KSSL/NASIS pedons with a derived WRB Reference Soil Group
anthraquic | Anthraquic horizon (WRB 2022): puddled-rice / paddy plough layer. v0.3.3 detects via designation pattern 'Apl|Ap|Hh'.
anthric_horizons | Anthric horizons (WRB 2022)
apply_soilgrids_depth_prior | Fill missing horizon attributes from a SoilGrids depth prior
apply_spectral_preprocessing | Apply a step-by-step Vis-NIR / MIR preprocessing pipeline
arenic_texture | Arenic texture (WRB 2022)
argic | Argic horizon (WRB 2022)
argic_aqp | Argic / argillic horizon via aqp::getArgillicBounds()
argic_with_strong_clay_films | Test whether a pedon's argic horizon has strong clay films
argillic_clay_films_test | Test for clay-illuviation evidence (KST 13ed Ch 3 p 4)
artefacts | Artefacts (WRB 2022 Ch 3.3.2)
as_aqp | Convert one or more PedonRecord objects to an aqp SoilProfileCollection
attach_lucas_spectra | Attach LUCAS 2018 Vis-NIR spectra to a list of PedonRecord objects
audit_argic_strong_films | Audit the strong-clay-films exclusion across a list of pedons
auto_set_proj_env | Auto-detect PROJ_LIB and GDAL_DATA directories
available_esdb_attributes | List ESDB Raster Library attributes available at a given root

## -- B --

batch_robustness | Batch robustness across many pedons
benchmark_afsp | Benchmark soilKey WRB predictions against AfSP ground truth
benchmark_bdsolos | Benchmark soilKey classifiers against BDsolos national reference labels
benchmark_lucas_2018 | Run the LUCAS Soil 2018 / ESDB WRB benchmark
benchmark_performance | Run the soilKey performance benchmark
benchmark_redape | Benchmark soilKey SiBCS predictions against the Redape gold standard
benchmark_run_classification | Run a benchmark across one of the loaded pedon lists
benchmark_spectral_fill | Benchmark the accuracy lift of spectral gap-fill (ON vs OFF), k-fold
benchmark_unified | Unified cross-dataset benchmark across SiBCS / WRB / USDA
benchmark_wrb_vs_usda | Benchmark soilKey WRB predictions against a USDA-derived ground truth
build_taxon_profiles | Build per-taxon mean depth profiles for predicted-taxon gap-fill
B_espodico | Horizonte B espodico (SiBCS Cap 2, p 62-65; v0.7)
B_incipiente | Horizonte B incipiente (SiBCS Cap 2, p 59-61; v0.7)
B_latossolico | Horizonte B latossolico (SiBCS Cap 2, p 57-59; v0.7 strict)
B_nitico | Horizonte B nitico (SiBCS Cap 2, p 61-62; v0.7)
B_planico | Horizonte B planico (SiBCS Cap 2, p 65-66; v0.7)
B_textural | Horizonte B textural (SiBCS Cap 2, p 54-57; v0.7 strict)

## -- C --

calcaric_material | Calcaric material (WRB 2022 Ch 3.3.3): \>= 2% CaCO3 throughout the fine earth, primary carbonates from the parent material.
calcic | Calcic horizon (WRB 2022)
cambic | Cambic horizon (WRB 2022)
cambic_aqp | Cambic horizon via aqp::getCambicBounds()
canonicalise_kst13ed_gg | Canonicalise a USDA Great Group label to a KST 13ed-compatible key
canonical_reference | Load a canonical reference dataset from soilKey or SoilTaxonomy
cerosidade | Cerosidade quantitativa (SiBCS Cap 13, p 207; Cap 1)
chernic | Chernic horizon (WRB 2022): the cherozemic-style mollic with very high biological activity (worm holes, casts, coprolites). v0.3.3: delegates to mollic + worm_holes_pct >= 50 (proxy for "biological homogenization").
chernozem | Chernozem RSG diagnostic (WRB 2022)
chernozem_strict | Chernozem RSG gate (strengthened, WRB 2022 Ch 4, p 111)
claric_material | Claric material (WRB 2022 Ch 3.3.4): light-coloured fine earth with Munsell criteria.
ClassificationResult | ClassificationResult: structured outcome of running a key
classification_robustness | Robustness of classification under input perturbation
classify_all | Classify a pedon across all three taxonomic systems
classify_by_spectral_neighbours | Classify a soil by spectral similarity to OSSL reference profiles
classify_csv | Classify a horizon spreadsheet in all three systems - one file, one line
classify_from_documents | Build a fully-classified 'PedonRecord' from documents in one call
classify_from_photos | Classify a soil profile from field photographs alone
classify_sibcs | Classifica um pedon segundo o SiBCS 5a edicao (1o + 2o + 3o + 4o niveis)
classify_sibcs_familia | Classifica um perfil no 5o nivel categorico do SiBCS (Familia)
classify_usda | Classify a pedon under USDA Soil Taxonomy (13th edition)
classify_usda_family | Classify the USDA family (5th level) of a pedon
classify_via_smartsolos_api | Classify a PedonRecord via Embrapa's SmartSolosExpert REST API
classify_with_engine_heuristic | Classify a pedon with the engine chosen by 'pick_engine()'
classify_with_uncertainty | Posterior distribution over classification outcomes
classify_wrb2022 | Classify a pedon under WRB 2022
clear_kst13_cache | Clear the in-memory KST13 cache
clear_ossl_cache | Clear the soilKey OSSL cache
combine_priors | Combine multiple spatial priors via weighted geometric mean
compare_engines | Side-by-side comparison of soilKey vs aqp diagnostic engines
compare_smartsolos | Cross-validate the local SiBCS classifier against the SmartSolosExpert API
compute_ki | Ki (silica:alumina molar) - SiBCS Cap 1, p 32
compute_kr | Kr (silica:sesquioxidos molar) - SiBCS Cap 1, p 32
compute_per_attribute_evidence_grade | Per-attribute provenance-aware evidence grade
continuous_rock | Continuous rock (WRB 2022 Ch 3.2.5)
coverage_report | Honest taxonomic-completeness report
cryic_conditions | Cryic conditions (WRB 2022)

## -- D --

DiagnosticResult | DiagnosticResult: structured outcome of a diagnostic test
distrofico | Solo distrofico (SiBCS Cap 1, p 30)
dolomitic_material | Dolomitic material (WRB 2022 Ch 3.3.5): \>= 2% Mg-rich carbonate, CaCO3/MgCO3 < 1.5. v0.3.3: detects via designation pattern 'kdo|do|magn' as proxy when ratio data missing.
download_bdsolos | Download the BDsolos consulta-publica CSV (experimental, requires chromote)
download_extdata_cache | Download one or more soilKey lazy-fetch caches from GitHub Release
download_ossl_subset | Download an OSSL subset and return an 'ossl_library' artefact
download_ossl_subset_with_labels | Download an OSSL subset and attach WRB / SiBCS / USDA labels
download_redape_dataset | Download the curated Redape GeoTab dataset (Vaz et al 2023)
duric_horizon | Duric horizon (WRB 2022)
duripa | Duripa (SiBCS Cap 2, p 74; v0.7)

## -- E --

ensure_horizon_schema | Coerce a horizons-like data.frame to the canonical schema
eutrofico | Solo eutrofico (SiBCS Cap 1, p 30)
evaluate_rsg_tests | Evaluate the test block of a single RSG
extract_horizons_from_pdf | Extract horizons from a soil description PDF
extract_munsell_from_photo | Extract Munsell color from a profile photo
extract_site_from_fieldsheet | Extract site metadata from a field-sheet image

## -- F --

familia_mineralogia_argila_geral | Familia: mineralogia da fracao argila (geral, nao-Latossolos)
FamilyAttribute | Classe S4-like para atributos de Familia (5o nivel SiBCS)
febr_index_munsell | Curated index of FEBR datasets that carry Munsell colors
ferralic | Ferralic horizon (WRB 2022)
ferralsol | Ferralsol RSG gate (WRB 2022 Ch 4, p 110)
ferric | Ferric horizon (WRB 2022)
fibrico | Material organico fibrico (SiBCS Cap 14)
fill_from_spectra | Fill missing soil attributes from spectra via OSSL
fill_munsell_from_spectra | Fill missing Munsell colors on a PedonRecord from Vis-NIR spectra
fluvic_material | Fluvic material (WRB 2022)
format_wrb_name | Format a WRB 2022 soil name with qualifiers
fragic | Fragic horizon (WRB 2022): a high-bulk-density horizon with restricted rooting. v0.3.3: detects via bulk_density_g_cm3 >= 1.65 AND structure grade massive/very firm OR designation pattern 'x'/'Bx'.
fragipa | Fragipa (SiBCS Cap 2, p 73-74; v0.7)
from_aqp | Convert an aqp SoilProfileCollection back to a list of PedonRecord

## -- G --

gapfill_by_predicted_taxon | Fill missing horizon attributes from the predicted taxon's mean profile
gapfill_derive_horizon | Fill horizon attributes derivable BY DEFINITION from the same horizon
gapfill_within_pedon | Fill interior missing horizon attributes by within-pedon depth interpolation
get_perturbation_scale | Monte-Carlo perturbation scale for an evidence grade
gleyic_properties | Gleyic properties (WRB 2022)
gleysol | Gleysol RSG gate (WRB 2022 Ch 4, p 103)
grapes-or-or-grapes | Default-value-for-NULL operator
GSM_DEPTHS | Default GlobalSoilMap depth intervals (cm)
gypsic | Gypsic horizon (WRB 2022)
gypsiric_material | Gypsiric material (WRB 2022 Ch 3.3.7): \>= 5% gypsum that is primary (not secondary). Without a "secondary fraction" schema column, v0.3.3 treats any layer with caso4_pct >= 5 as gypsiric unless it explicitly carries gypsic-horizon designation.

## -- H --

harmonize_to_gsm | Harmonise pedons to GlobalSoilMap depth intervals
hemico | Material organico hemico (SiBCS Cap 14)
histic_horizon | Histic horizon (WRB 2022)
horizon_column_spec | Canonical horizon column specification
hortic | Hortic horizon (WRB 2022): garden / kitchen-midden topsoil. Diagnostic criteria: thickness \>= 20 cm, dark colour (mollic-like), high P (Mehlich-3 P >= 100 mg/kg or P2O5_1pct_citric >= 175 mg/kg), high SOC.
hydragric | Hydragric horizon (WRB 2022): subsoil hydric horizon under anthraquic. v0.3.3 detects via designation pattern 'Bg|Brg' immediately below an anthraquic-like topsoil.
hypersulfidic_material | Hypersulfidic material (WRB 2022 Ch 3.3.8): \>= 0.01% inorganic sulfidic S, pH \>= 4, capable of severe acidification on aerobic incubation.
hyposulfidic_material | Hyposulfidic material (WRB 2022 Ch 3.3.9): same inorganic sulfidic S and field pH as hypersulfidic but does NOT consist of hypersulfidic (criterion 3 - does not acidify to pH < 4 on aerobic incubation, usually self-neutralised by carbonate). Reachable from v0.9.128: when 'incubation_ph' is measured, a sulfidic + pH>=4 layer that stays >= 4 on incubation is the set-complement of 'hypersulfidic_material' and is reported here. Without an incubation pH the two cannot be told apart, so this returns empty (the layer is reported as potential hypersulfidic instead).

## -- I --

inspect_bdsolos_csv | Diagnostic inspection of a BDsolos CSV before loading
irragric | Irragric horizon (WRB 2022): topsoil thickened by irrigation deposits. v0.3.3: thickness >= 20 cm + sediment-derived structure proxied via designation 'Apk|Apg|Au'.

## -- K --

kastanozem | Kastanozem RSG diagnostic (WRB 2022)
kastanozem_strict | Kastanozem RSG gate (strengthened, WRB 2022 Ch 4, p 112)
key_trace_table | Flatten a classification key trace into a tabular form
kst13_canonical | Keys to Soil Taxonomy 13th edition canonical reference
kst13_codes | Load the canonical KST 13ed code -> taxon-name lookup table
kst13_criteria | Load the canonical KST 13ed criteria for a single taxon code

## -- L --

leptic_features | Leptic features (WRB 2022)
limnic_material | Limnic material (WRB 2022 Ch 3.3.10): subaquatic deposits (coprogenous earth, diatomaceous earth, marl, gyttja). v0.3.3: detects via 'rock_origin %in% c("lacustrine", "marine")' or designation pattern.
limonic | Limonic horizon (WRB 2022 Ch 3.1)
lithic_discontinuity | Lithic discontinuity (WRB 2022 Ch 3.2.7)
lixisol | Lixisol RSG diagnostic (WRB 2022)
load_afsp_pedons | Load Africa Soil Profiles (AfSP) v1.2 as PedonRecord objects
load_afsp_sample | Load the bundled AfSP stratified sample (v0.9.77)
load_bdsolos_csv | Load a BDsolos CSV export as a list of PedonRecord objects
load_embrapa_pedons | Load Embrapa dadosolos pedons with reference SiBCS classification
load_febr_pedons | Load the Embrapa FEBR superconjunto into a list of PedonRecords
load_kssl_nasis_sample | Load the bundled KSSL + NASIS morphological-enriched sample (v0.9.75)
load_kssl_pedons | Load NCSS / KSSL pedons with reference USDA Soil Taxonomy classification
load_kssl_pedons_gpkg | Load KSSL / NCSS pedons from the ncss_labdata GeoPackage
load_kssl_pedons_with_nasis | Load KSSL pedons enriched with NASIS morphology
load_kssl_sample | Load the bundled KSSL/NCSS lab-data sample (v0.9.74)
load_lucas_pedons | Load EU-LUCAS / ESDB pedons with reference WRB classification
load_lucas_soil_2018 | Load the LUCAS Soil 2018 Topsoil release as a list of PedonRecord objects
load_ossl_models | Save / load trained OSSL-backed PLSR models
load_redape_pedons | Load curated soil profiles from the Embrapa Redape GeoTab dataset
load_rules | Load a soilKey rule set (YAML)
load_wosis_sample | Load the bundled WoSIS South-America sample
load_wosis_stratified_sample | Load the bundled WoSIS stratified RSG-balanced sample (v0.9.73)
lookup_esdb | Look up an ESDB raster value at WGS84 coordinates
lookup_mapbiomas_solos | Look up a MapBiomas Solos raster value at WGS84 coordinates
lookup_soilgrids | Look up a SoilGrids 250m soil property at WGS84 coordinates
luvisol | Luvisol RSG diagnostic (WRB 2022)

## -- M --

make_acrisol_canonical | Build the canonical Acrisol fixture
make_alisol_canonical | Build the canonical Alisol fixture
make_andosol_canonical | Build the canonical Andosol fixture
make_anthrosol_canonical | Build the canonical Anthrosol fixture
make_arenosol_canonical | Build the canonical Arenosol fixture
make_argissolo_canonical | Perfil canonico de Argissolo (SiBCS 5a ed., Cap 5)
make_calcisol_canonical | Build the canonical Calcisol fixture
make_cambisol_canonical | Build the canonical Cambisol fixture
make_cambissolo_canonical | Perfil canonico de Cambissolo (SiBCS 5a ed., Cap 6)
make_chernossolo_canonical | Perfil canonico de Chernossolo (SiBCS 5a ed., Cap 7)
make_chernozem_canonical | Build the canonical Chernozem fixture
make_cryosol_canonical | Build the canonical Cryosol fixture
make_durisol_canonical | Build the canonical Durisol fixture
make_empty_horizons | Build an empty horizons data.table with the canonical schema
make_espodossolo_canonical | Perfil canonico de Espodossolo (SiBCS 5a ed., Cap 8)
make_ferralsol_canonical | Build the canonical Ferralsol fixture
make_fluvisol_canonical | Build the canonical Fluvisol fixture
make_gleissolo_canonical | Perfil canonico de Gleissolo (SiBCS 5a ed., Cap 9)
make_gleysol_canonical | Build the canonical Gleysol fixture
make_gypsisol_canonical | Build the canonical Gypsisol fixture
make_histosol_canonical | Build the canonical Histosol fixture
make_kastanozem_canonical | Build the canonical Kastanozem fixture
make_latossolo_canonical | Perfil canonico de Latossolo (SiBCS 5a ed., Cap 10)
make_leptosol_canonical | Build the canonical Leptosol fixture
make_lixisol_canonical | Build the canonical Lixisol fixture
make_luvisol_canonical | Build the canonical Luvisol fixture
make_luvissolo_canonical | Perfil canonico de Luvissolo (SiBCS 5a ed., Cap 11)
make_neossolo_canonical | Perfil canonico de Neossolo Litolico (SiBCS 5a ed., Cap 12)
make_nitisol_canonical | Build the canonical Nitisol fixture
make_nitossolo_canonical | Perfil canonico de Nitossolo Vermelho (SiBCS 5a ed., Cap 13)
make_organossolo_canonical | Perfil canonico de Organossolo (SiBCS 5a ed., Cap 14)
make_phaeozem_canonical | Build the canonical Phaeozem fixture
make_planosol_canonical | Build the canonical Planosol fixture
make_planossolo_canonical | Perfil canonico de Planossolo (SiBCS 5a ed., Cap 15)
make_plinthosol_canonical | Build the canonical Plinthosol fixture
make_plintossolo_canonical | Perfil canonico de Plintossolo (SiBCS 5a ed., Cap 16)
make_podzol_canonical | Build the canonical Podzol fixture
make_retisol_canonical | Build the canonical Retisol fixture
make_solonchak_canonical | Build the canonical Solonchak fixture
make_solonetz_canonical | Build the canonical Solonetz fixture
make_stagnosol_canonical | Build the canonical Stagnosol fixture
make_synthetic_pedon_with_spectra | Build a synthetic PedonRecord with attached spectra (testing aid)
make_technosol_canonical | Build the canonical Technosol fixture
make_umbrisol_canonical | Build the canonical Umbrisol fixture
make_vertisol_canonical | Build the canonical Vertisol fixture
make_vertissolo_canonical | Perfil canonico de Vertissolo (SiBCS 5a ed., Cap 17)
mineral_material | Mineral material (WRB 2022 Ch 3.3.11): < 20% SOC AND < 35% volume artefacts containing >= 20% organic carbon. The complement of organic_material / organotechnic_material.
mollic | Mollic horizon (WRB 2022)
mudanca_textural_abrupta | Mudanca textural abrupta (SiBCS Cap 1, p 30-31)
mulmic_material | Mulmic material (WRB 2022 Ch 3.3.12): mineral material developed from organic material; \>= 8% SOC, with low BD, structural / chroma criteria.

## -- N --

natric_horizon | Natric horizon (WRB 2022)
nitic_horizon | Nitic horizon (WRB 2022)
normalise_febr_sibcs | Canonicalise FEBR SiBCS names to match soilKey rule outputs.
normalise_febr_usda | Normalise FEBR USDA taxon strings to USDA Soil Taxonomy Order
normalise_febr_wrb | Normalise FEBR WRB taxon strings to RSG-only
normalise_kssl_subgroup | Normalise KSSL USDA subgroup labels for benchmark comparison

## -- O --

ollama_is_running | Is the local Ollama HTTP API reachable?
organic_material | Organic material (WRB 2022 Ch 3.3.13): \>= 20% SOC + recognisability criteria. v0.3.3: SOC threshold only.
organotechnic_material | Organotechnic material (WRB 2022 Ch 3.3.14): \>= 35% volume of artefacts that themselves contain \>= 20% organic C. Soil itself has < 20% SOC.
ornithogenic_material | Ornithogenic material (WRB 2022 Ch 3.3.15): bird-influenced topsoil. Mehlich-3 P >= 750 mg/kg + designation pattern 'Aornit|Bornit'.
ossl_demo_sa | Synthetic OSSL South America demo subset
ossl_library_template | Canonical schema for an 'ossl_library' object
oxic_usda | Oxic horizon (USDA Soil Taxonomy)

## -- P --

panpaic | Panpaic horizon (WRB 2022 Ch 3.1)
PedonRecord | PedonRecord: structured representation of a single pedon
pedons_from_spectral_table | Build PedonRecords with attached Vis-NIR/MIR spectra from a table
pedon_json_schema | JSON Schema for a soilKey PedonRecord
pedon_to_spc | Convert a soilKey PedonRecord to an aqp SoilProfileCollection
petrocalcic | Petrocalcic horizon (WRB 2022)
petroduric | Petroduric horizon (WRB 2022): cemented duric.
petrogypsic | Petrogypsic horizon (WRB 2022): cemented gypsic.
petroplinthic | Petroplinthic horizon (WRB 2022): cemented plinthic.
phaeozem | Phaeozem RSG diagnostic (WRB 2022)
pick_engine | Choose the best diagnostic engine for a single pedon
pick_engine_batch | Per-pedon batch engine recommendation
pisoplinthic | Pisoplinthic horizon (WRB 2022): pisolitic plinthic. v0.3.3 detects via designation pattern 'Bspl' / 'Bvpi' or via plinthite \>= 15% AND structure_type containing 'pisol'.
pi_to_confidence | Map a 95% prediction interval to a [0, 1] confidence score
plaggic | Plaggic horizon (WRB 2022): sod-derived topsoil >= 20 cm with low BD AND independent evidence of human input.
planic_features | Planic features (WRB 2022)
planosol | Planosol RSG gate (WRB 2022 Ch 4, p 107)
plinthic | Plinthic horizon (WRB 2022)
posterior_classify | Bayesian posterior classifier (optional)
predict.soilKey_pls_model | Predict from a soilKey_pls_model
predict_from_spectra | Predict soil properties from spectra
predict_lab_from_spectra | Predict CIE Lab from Vis-NIR reflectance spectra
predict_munsell_from_spectra | Predict Munsell hue / value / chroma from Vis-NIR reflectance spectra
predict_ossl_mbl | Memory-based learning prediction against the OSSL library
predict_ossl_plsr_local | Local PLSR prediction against the OSSL library
predict_ossl_pretrained | Pre-trained OSSL prediction
predict_xyz_from_spectra | Predict CIE XYZ tristimulus values from Vis-NIR reflectance spectra
preprocess_spectra | Pre-process Vis-NIR or MIR spectra
pretic | Pretic horizon (WRB 2022): "Amazonian Dark Earth" (terra preta de indio) horizon - thick anthropogenic surface with high P, SOC, and incorporated charcoal / pottery.
print.soilKey_pls_model | Print method for soilKey_pls_model
prior_consistency_check | Check consistency between a deterministic RSG assignment and a spatial prior
protocalcic_properties | Protocalcic properties (WRB 2022 Ch 3.2.8)
protogypsic_properties | Protogypsic properties (WRB 2022 Ch 3.2.9): visible secondary gypsum \>= 1% but below the gypsic gate.
protovertic | Protovertic horizon (WRB 2022 Ch 3.1)

## -- R --

read_febr_pedons | Load FEBR datasets as a list of PedonRecord objects
read_pedon_csv | Read a horizon spreadsheet (CSV/TSV) into a PedonRecord
read_spectral_library | Read a Vis-NIR / MIR reflectance + lab table into an OSSL-shaped library
reducing_conditions | Reducing conditions (WRB 2022 Ch 3.2.10) - per-pedon test wrapping 'test_reducing_conditions'.
report | Render a soilKey classification report
report_html | Render a soilKey classification report as self-contained HTML
report_pdf | Render a soilKey classification report as PDF
report_to_qgis | Export a classification result + pedon to a QGIS GeoPackage
resolve_wrb_qualifiers | Resolve WRB 2022 qualifiers for a Reference Soil Group
retic_properties | Retic properties (WRB 2022)
run_all_benchmarks | Run the full soilKey benchmark suite and (optionally) write a report
run_classify_app | Launch the soilKey interactive classification Shiny app
run_demo | Launch the soilKey Shiny demo (one-screen GUI)
run_sibcs_grande_grupo | Resolve o grande grupo (3o nivel) de um pedon classificado em uma subordem SiBCS
run_sibcs_key | Roda a chave SiBCS 5a edicao sobre um pedon
run_sibcs_subgrupo | Resolve o subgrupo (4o nivel) de um pedon classificado em um Grande Grupo SiBCS
run_sibcs_subordem | Resolve a subordem de um pedon ja classificado em uma ordem SiBCS
run_taxa_list | Iterate a flat taxa list and evaluate tests in canonical order
run_taxonomic_key | Run a taxonomic key (system-agnostic engine)
run_usda_great_group | Run the USDA Great Group key for a given Suborder
run_usda_key | Run the USDA Soil Taxonomy Order key over a pedon
run_usda_subgroup | Run the USDA Subgroup key for a given Great Group
run_usda_suborder | Run the USDA Suborder key for a given Order
run_wrb_key | Run the WRB 2022 key over a pedon

## -- S --

salic | Salic horizon (WRB 2022)
saprico | Material organico saprico (SiBCS Cap 14)
save_ossl_models | Save / load trained OSSL-backed PLSR models
shrink_swell_cracks | Shrink-swell cracks (WRB 2022 Ch 3.2.12) - per-pedon test wrapping 'test_shrink_swell_cracks'.
sideralic_properties | Sideralic properties (WRB 2022 Ch 3.2.13)
soilgrids_usda_lut | SoilGrids -> USDA Soil Order lookup table (placeholder)
soilgrids_wrb_lut | SoilGrids -> WRB code lookup table
soil_classes_at_location | Likely soil classes at a geographic location (spatial classification aid)
soil_organic_carbon | Soil organic carbon (WRB 2022 Ch 3.3.16): organic C that does NOT belong to artefacts. v0.3.3: any layer with oc_pct >= 0.1 and artefacts_industrial_pct < 35.
solimovic_material | Solimovic material (WRB 2022 Ch 3.3.17): hetero genous mass-movement material on slopes / footslopes (formerly "colluvic"). v0.3.3: detects via 'rock_origin == "colluvial"' OR 'layer_origin == "solimovic"'.
sombric | Sombric horizon (WRB 2022): subsurface accumulation of humus that qualified neither as spodic nor as a true mollic-like horizon (low-base-saturation cool tropical highlands). v0.3.3 detects via designation pattern + OC criteria (BS < 50, OC > 0.6, depth > 25 cm).
spatial_prior | Spatial prior over RSGs (or Orders) at a pedon's location
spatial_prior_embrapa | Embrapa national soil-class spatial prior (Brazil only)
spatial_prior_soilgrids | SoilGrids spatial prior
spodic | Spodic horizon (WRB 2022)
stagnic_properties | Stagnic properties (WRB 2022)
st_features_canonical | USDA Soil Taxonomy diagnostic features canonical table
subgrupo_planossolo_espessos | Subgrupo "espessos" de Planossolos (B planico profundo, > 100 cm)
subgrupo_planossolo_mesicos | Subgrupo "mesicos" de Planossolos (B planico topo em [50, 100] cm)
subgrupo_plintossolo_endico_concrecionario | Subgrupo "endico" de Plintossolos Concrecionarios (topo de horizonte concrecionario >= 40 cm)
subgrupo_plintossolo_endico_litoplintico | Subgrupo "endico" de Plintossolos Litoplinticos (topo de horizonte litoplintico >= 40 cm)
subgrupo_plintossolo_espessos | Subgrupo "espessos" de Plintossolos (horizonte plintico topo > 100 cm)

## -- T --

takyric_properties | Takyric properties (WRB 2022 Ch 3.2.15) - per-pedon test wrapping 'test_takyric_surface'.
technic_features | Technic features (WRB 2022)
technic_hard_material | Technic hard material (WRB 2022 Ch 3.3.18): consolidated human-made material (asphalt, concrete, worked stones).
tephric_material | Tephric material (WRB 2022 Ch 3.3.19): \>= 30% volcanic glass in 0.02-2 mm fraction AND no andic / vitric properties.
terric | Terric horizon (WRB 2022): topsoil thickened by long-term application of mineral material (sediment / sand additions). v0.3.3: thickness >= 20 cm + designation Au / Apc.
texture_class_from_pct | NRCS texture-class shorthand from clay / silt / sand percent
thionic | Thionic horizon (WRB 2022): post-oxidation acid sulfate horizon. Requires sulfidic_s_pct >= 0.01 AND pH(H2O) <= 4.
train_pls_from_ossl | Train pre-trained PLSR models from an OSSL library
tsitelic | Tsitelic horizon (WRB 2022 Ch 3.1)

## -- U --

umbric_horizon | Umbric horizon (WRB 2022)
usda_to_wrb_rsg | USDA Soil Taxonomy <-> WRB Reference Soil Group correlation table

## -- V --

validate_horizon_geometry | Validate horizon depth geometry
validate_pedon_json | Validate a PedonRecord against the JSON schema
vertic_horizon | Vertic horizon (WRB 2022 Ch 3.1)
vertic_properties | Vertic properties (WRB 2022)
vertisol | Vertisol RSG gate (WRB 2022 Ch 4, p 101)
vitric_properties | Vitric properties (WRB 2022 Ch 3.2.16)
vlm_pick_provider | Pick the best available VLM provider
vlm_provider | Construct a VLM provider chat object

## -- W --

wrb06_code_to_rsg | WRB 2006 RSG code -> 2022 RSG name
wrb2022_canonical | WRB 2022 canonical reference (parsed IUSS Working Group WRB 2022)

## -- Y --

yermic_properties | Yermic properties (WRB 2022 Ch 3.2.17) - per-pedon test wrapping 'test_yermic_surface'.

## -- misc --

%||% | Default-value-for-NULL operator