calc_dsge               Compute DSGE (Disruption Score of Gene
                        Expression)
dsge_perm_test          Permutation test for DSGE enrichment of a
                        single gene set
get_gaf_header          Extract header lines from a GAF file
get_pathway_genes       Extract gene-pathway (GO term) associations
                        from GAF data
get_pathway_genes_db    Build pathway-gene mapping from a Bioconductor
                        OrgDb object
get_pathway_genes_kegg
                        Build KEGG pathway-gene mapping from a
                        Bioconductor OrgDb object
get_pathway_genes_reactome
                        Build Reactome pathway-gene mapping from a
                        Bioconductor OrgDb object
pathway_dsge            Pathway-level DSGE permutation test with FDR
                        correction
plot_dsge               Plot null distribution vs. observed DSGE for
                        selected pathways
plot_dsge_volcano       Gene-level volcano plot for a specific pathway
read_gaf                Read a Gene Ontology Annotation File (GAF)
read_obo                Read GO term names from an OBO file
