ab8c9dd3d8cfb83b05a4cbaf92dae329 *DESCRIPTION
7bf1ccc26e5826ec963a19aff15d41f7 *LICENSE
880f7871a68ce10163b5959e0f621f29 *NAMESPACE
00e823c28200e06e5c37fab7852c835f *NEWS.md
ef0b76b7bdb3f144dda77b85f8a915cb *R/EMM_functions_cpp.R
24a3691c4c26692baa696daea12e200f *R/RAINBOWR.R
125b5442fa741c3a812fd971b7654bd6 *R/RGWAS.epistasis.R
297a45261519f741075f898e4300f19c *R/RGWAS.menu.R
b8fb8590913f2afd30f34d1d6d086c57 *R/RGWAS.multisnp.R
c2e7a72d745cd6220ffd7478ec0347c8 *R/RGWAS.multisnp.interaction.R
f66e96dcaa5d71d34cb1fe0005f0531b *R/RGWAS.normal.R
030684763dde9a1b52b4c642a038dbea *R/RGWAS.normal.interaction.R
534ef3bb8dd3cb54d02506ff0c935326 *R/RGWAS.twostep.R
5cee649f72f4fddb4a9256ec6c9c32f7 *R/RGWAS.twostep.epi.R
3fae5741e4163d2d13f86d81133eed70 *R/RcppExports.R
9c05bf91332d495401032aaaa828450b *R/Rice_Zhao_etal.R
df429b1913154d233f3ccde96623eed3 *R/Rice_geno_map.R
03df50ec745fd846fd1c3436f17e0419 *R/Rice_geno_score.R
5f20b06862aa883e57d676818dfa4dd6 *R/Rice_haplo_block.R
33af6bcfd26b3b7e49dc438e5bfacd0c *R/Rice_pheno.R
da5e086e0de58dffa8e817ca56eb63cb *R/SS_gwas.R
6e6aff52daa24ce5f80c36770647d469 *R/examples/EM3.cpp_example.R
9ece246baf640f535e14fbb001b3bd2f *R/examples/EM3.general_example.R
d906a561fbd0ee0c744ec9df49ed2151 *R/examples/EM3.linker.cpp_example.R
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7a04da743497cf656689a61793cab4a9 *R/examples/RGWAS.epistasis_example.R
7e55d03a0d1cb9349eaf3220fe57a143 *R/examples/RGWAS.multisnp.interaction_example.R
89232be44b77f7665282a006d961dcea *R/examples/RGWAS.multisnp_example.R
aabff0b2202feed0f7e5ece31b756f8a *R/examples/RGWAS.normal.interaction_example.R
804bc3a4252392dabcc318c88e2e7544 *R/examples/RGWAS.normal_example.R
bb91a50f7a2e93acea205785296221ed *R/examples/RGWAS.twostep.epi_example.R
17d969f38f0063cfc5c9053e66529b42 *R/examples/RGWAS.twostep_example.R
25dbeae1f51fd0fcb6a51221f9d267f3 *R/functions_for_RGWAS.R
2aefd1658da3046c039377b9f06de0fe *R/genetrait.R
6c46b39eab3105af007cb7d574a8c1ca *R/other_useful_functions.R
cabcde6f5f4c106c8ac9f2b7e68b9706 *README.md
eb44433fffa3110d7490020c1d59ce51 *build/vignette.rds
6b4a2b63a45a37d919de08bd62e76853 *data/Rice_Zhao_etal.rda
7c22e8bd5c047dad605d2b0b401627ba *data/datalist
8eb3b4de1fea9417be9185fd741eb1da *inst/CITATION
eba32ab9525f55e75dc2bc6087fabfd5 *inst/doc/RAINBOWR.R
af67f10537e800bb24de22c5592f7866 *inst/doc/RAINBOWR.Rmd
59fe6344c962cfad3807df2b20f292dc *inst/doc/RAINBOWR.html
fc43588133c424a67ff4d5ecce2267a6 *man/CalcThreshold.Rd
e5e909a8c0a3eaf26e219d8d81ee91f5 *man/EM3.cpp.Rd
774c8556133e550efe862daacbd7526f *man/EM3.general.Rd
d9282425b322ed1a97480c81f345709a *man/EM3.linker.cpp.Rd
9d1e85af96ea5ab56beeab2932d8282a *man/EM3.op.Rd
cea11f1e89103240acdce9e10f89b170 *man/EMM.cpp.Rd
23243f44e3827c78d5127e6adae99b8a *man/EMM1.cpp.Rd
a3623fabb2886c582e12f83f5d5df0ba *man/EMM2.cpp.Rd
2433515b1cea72465a262439baae21c5 *man/MAF.cut.Rd
c984836af83aecf02e4bbaa4cebf0ca9 *man/RAINBOWR.Rd
7106d3552b27b786c7890b6ae8b2f069 *man/RGWAS.epistasis.Rd
3f95c1d135bbc3b48bfdc72b5ea1d29b *man/RGWAS.menu.Rd
9c84fb9046f493472b0d21e534c11ad1 *man/RGWAS.multisnp.Rd
35ff7f559a566a46275968623f46a68f *man/RGWAS.multisnp.interaction.Rd
82d2f61d0d5673504ae9e5a1c02e7dab *man/RGWAS.normal.Rd
8689c9734cb42491d1a73869a44e125f *man/RGWAS.normal.interaction.Rd
fcc4b4fab0e92c068953ed88aa7c6cef *man/RGWAS.twostep.Rd
d685e303840dfb20c06b256d0f468ca1 *man/RGWAS.twostep.epi.Rd
4ef455ab0252746b3bffa52624f54ba7 *man/Rice_Zhao_etal.Rd
104280b9bc00f590a0b6d39269ec45f7 *man/Rice_geno_map.Rd
a610b5f25f78bc03fde6365a61fbdff0 *man/Rice_geno_score.Rd
3155fc424b4b0339b55ed3fe4c58bb7b *man/Rice_haplo_block.Rd
6aff726f13a3be7a488fbbc9968f12c4 *man/Rice_pheno.Rd
5c0cc8dd69a4669ffc72f6b14de59863 *man/SS_gwas.Rd
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8204b2a227960cb25df7f0e4eab3c348 *man/adjustGRM.Rd
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8753e5dded5eb01bfbe644aaa241ead8 *man/convertBlockList.Rd
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4eda53bcbb20a0e110146fcfa5adf8f2 *man/estNetwork.Rd
0c030f9e90a7c7b9846adaaf5c9948c6 *man/estPhylo.Rd
1b5d7658f519b40d0a72e724d94a20a8 *man/genesetmap.Rd
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dee7b90441aa20d5a7c84f0d09a377ad *man/make.full.Rd
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932e532650ebd3eeaa6d688159e04a90 *man/manhattan3.Rd
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54eca9adf15cdd14e2dabe3861c300d2 *man/parallel.compute.Rd
c6f52dad1382b5164c511baf8294f243 *man/plotHaploNetwork.Rd
cbb3ba62ddaad0972197b83ddec6ca0a *man/plotPhyloTree.Rd
98440e83f68a599e7a9532ba64047e1c *man/qq.Rd
7e89dfca802a25f8098827ec50e17f4a *man/score.calc.LR.MC.Rd
47761e59fdb9ed0b5ec6e46f9c2e8e32 *man/score.calc.LR.Rd
b4705ceb1e02247a3dde499b2cfc19a2 *man/score.calc.LR.int.MC.Rd
4f5c0c0618ccdaed05bb4f92d54a2e27 *man/score.calc.LR.int.Rd
1e358a37a4a626856a3d0c7875f6ca81 *man/score.calc.MC.Rd
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7b0a345464a23426da1412a2fe625c0e *man/score.calc.epistasis.LR.MC.Rd
4e006388a47931a91e61bc490d8e9b10 *man/score.calc.epistasis.LR.Rd
c1bd0156129f8583fb7592884da7ae17 *man/score.calc.epistasis.score.MC.Rd
0658258e1209a19d3abeaaf45a5297e9 *man/score.calc.epistasis.score.Rd
89876c9836fbec8c6a81256dd80ff0d6 *man/score.calc.int.MC.Rd
2b8b514c426520dc4037204c69e8d61d *man/score.calc.int.Rd
03cd2919737396d67ff62ddba8381ac6 *man/score.calc.score.MC.Rd
df52f8e401fd2d25bb851dbfeb94247a *man/score.calc.score.Rd
f31871427ffdd3f28545b5415dc0b707 *man/score.cpp.Rd
31dfb8875ad37cef92160006fedac526 *man/score.linker.cpp.Rd
e933603db534dd978f8a364ce4d7eb78 *man/spectralG.cpp.Rd
360bba514cc60960abf248914906903e *man/welcome_to_RGWAS.Rd
024a09865017ff9907db040f9a4a30b3 *src/EMM_functions.cpp
72c2d7b1def2e88000a5e639496a6a82 *src/RcppExports.cpp
af67f10537e800bb24de22c5592f7866 *vignettes/RAINBOWR.Rmd
