0543a2004ef003fc66aff4caf963d9cf *DESCRIPTION
50782d039a6551e803b88c5434b14814 *LICENSE.note
ef06be6437410a623f27a9e7fa33f382 *NAMESPACE
7e411558bdcf93574656fc9bae9068c9 *NEWS.md
75d86c7214d770c61cfc306defffd486 *R/argument.R
2191b11c7227467fa1584f2914196565 *R/blit-package.R
e6abf6aa6ad680785d6338b59ce66360 *R/cmd-.R
b6fb3ce78ba601c8689fcbcf28b55332 *R/cmd-alleleCounter.R
f0bb9c9dd79785c83fa45b5f505b9f74 *R/cmd-cellranger.R
55ebc56a11d59c53a4fc77a29c3c2bef *R/cmd-fastq_pair.R
8b4d0dea59195f3235b0f91687fdb352 *R/cmd-gistic2.R
c4cdb73788bf91141a0609b3e8613af9 *R/cmd-kraken2-tools.R
4de59ff99e897a2aa6fc716ef86a98a0 *R/cmd-kraken2.R
b04b06a3dfa11ec37aed4ad360b20529 *R/cmd-perl.R
b322f975db7529a43e90c2011a868365 *R/cmd-pyscenic.R
801d6e6dcb921138e435da44687ebbaa *R/cmd-python.R
2e4415c956f5441470f52f16460af387 *R/cmd-seqkit.R
c8079dd753131d614663beac677a21a5 *R/cmd-trust4.R
e8f7f77633946d0f675c75c4d32b5005 *R/import-standalone-assert.R
d3156adc16e37ca23dfea7be9fa4f04c *R/import-standalone-obj-type.R
0dc96a55196e350f01fb032ce3629d22 *R/import-standalone-stringr.R
5a3196db790cb256053226851407e2b4 *R/utils-Rd.R
bc1d83edfbba0ce4425888886d1f93ac *R/utils-file.R
af241f881b0229ef01c507d10a25c484 *R/utils.R
57d884859ba1d38ddeac52996a6eec0b *README.md
cf56ce3b9dde91cfb53283cece669a89 *inst/extdata/KrakenTools/combine_kreports.py
b2f784510ae3d47a615e1a52055ce9ee *inst/extdata/KrakenTools/combine_mpa.py
496ddfc05a1e47fe4b447393db7ac193 *inst/extdata/KrakenTools/extract_kraken_reads.py
a262c111974f88d6f02d3c67c09ccf0c *inst/extdata/KrakenTools/filter_bracken_out.py
f91444dc0c59497bb3960e6105a8e82d *inst/extdata/KrakenTools/fix_unmapped.py
1d49000a3e24b045754f69ae51c51af5 *inst/extdata/KrakenTools/kreport2krona.py
d223e92f793a03a5f0f75c1d59f1aeac *inst/extdata/KrakenTools/kreport2mpa.py
c3cae9293800cf17b71fac23c60f35c6 *inst/extdata/KrakenTools/make_kreport.py
9e147d4cd3f534829bd9f3f6ab4c0c6d *inst/extdata/KrakenTools/make_ktaxonomy.py
2c8662438592bcd4a788e416bef34163 *inst/extdata/TRUST4/BuildDatabaseFa.pl
d58c0bc176cad514f4e46180823ee7ea *inst/extdata/TRUST4/BuildImgtAnnot.pl
456cfc9fec5e4cc50deacfa01b052b1f *inst/extdata/kraken2/kreport2mpa.py
8c28559499d2d72906ae9fcd45a7ac9a *man/Command.Rd
f6e8cb61e7a29f90a77a04a9d4c501c5 *man/allele_counter.Rd
185ad4488e4bf334409f47fbc1556a77 *man/arg.Rd
60fd700a38e32e0998cee9a3ea05b6ef *man/blit-package.Rd
0c173e6e341c73ccd64b79319bb493c6 *man/cellranger.Rd
d6912a0421eaa2bc80bce8a99e99ee08 *man/cmd_run.Rd
7450734210301efb69d432d52246473f *man/cmd_wd.Rd
ff882f69d4b1ceddd0318361e41728b2 *man/exec.Rd
720ded8126eda2306c9f591ac74e07f1 *man/fastq_pair.Rd
c7486c7a8f5ccfb176469ea95899d04a *man/figures/logo.png
58c9275793ed61e8689044ffff9fd98e *man/gistic2.Rd
b450cf9c99d57b4c64aff757ba4c5d1a *man/kraken2.Rd
3e86dc4f5eb4ed34416e98d05073687b *man/kraken_tools.Rd
833ca8c83881747e1f00b82fe384023e *man/make_command.Rd
c944ef7639bc911b8ae2d2cd4ec39f3e *man/perl.Rd
dffb40b994c9c04fab42e0938f071945 *man/pyscenic.Rd
b4f234fdc7d3936a6c0727e21ef5ea0c *man/python.Rd
a9a3ecccc92ff9867fb854e332741f18 *man/seqkit.Rd
0506e051fa82efa1afe41f116675a094 *man/trust4.Rd
2b64af8386e3082922421196d3279e8a *tests/testthat.R
9b75349b411324076eb2c4a67ef98b7b *tests/testthat/test-exec.R
ed11aadde3051f94cf0a9969e3252204 *tests/testthat/test-utils.R
