1616686e7de362369409831226f90163 *DESCRIPTION
5c2d09c0ad784143f5269e311eee1b86 *NAMESPACE
ff9141ec04c72f267d117e450120ed0f *NEWS
fc4c81f47b80a93d3f8296703c44310a *R/datasets.R
e13c63bfde19caec2808390a3fcbc99f *R/deconstructSigs.R
e4a419a217ac4ac8d7d67c8d2351c650 *R/globalVariables.R
e328d418330ebba77d1ed6acc5723dc9 *R/golden_section_search.R
3a2e6fdcdbe6feb34c2f2d7c80d8506c *R/internal.scripts.R
780fb3fccceda08cc73fcd0399839afa *R/mut.to.sigs.input.R
152c7a4bcb034ecbb8942e45f0172f03 *R/normalize.data.R
e9558afba7ee933574bba0ec8247f847 *R/plotting.R
c73ecd1a4f6f8ecc97fe173d465b51d1 *R/vcf.to.sigs.input.R
6d8f40b036a2348a0d72bde90bbe58d6 *R/whichSignatures.R
a956d20ba8e64ff0f4f4dab5fa782513 *README.md
2a0ce6f23d47720a42167feaa5008901 *data/example.output.rda
6ded2ca81a0ef4da4742d47e9aee242a *data/randomly.generated.tumors.rda
2e07409e29d087231b4198b75898263f *data/sample.mut.ref.rda
2736a7fa04437f1c893ff3c63af0ce3d *data/signatures.cosmic.rda
7ab82edd0182c5f92747e86e3e0a6bb2 *data/signatures.nature2013.rda
69f00840c1b2b88966ad17d9f2318488 *data/tri.counts.exome.rda
c5b8aea9fbc9fea44f002b8ab53fb117 *data/tri.counts.genome.rda
2280cfd7d71c0e92bae7319cfeb42e02 *inst/extdata/makePie.png
7ae4991f15fc3fcf345f7371a2e4532d *inst/extdata/plotSignatures.png
651b9a607ed89920ed0cff7ba0a86130 *man/changeColumnNames.Rd
699f3eca9564bf9243e57faedd077732 *man/deconstructSigs.Rd
6394f580df1b1cb3ad67bdd8c9ed0c76 *man/example.output.Rd
c1e0d6521c31a8b659d36a0e412a7af4 *man/findSeed.Rd
a394605fa0c6afe5be40bfa57a67af57 *man/formatContexts.Rd
48e4adbe609c12cebc187d967829c3c1 *man/getError.Rd
3422873fd07dcc75e5e89b7a0162238f *man/getTriContextFraction.Rd
74e077a6651da35afa84915fd3cc96e2 *man/golden.section.search.Rd
1fa4b6820c39cbd58c90f6774900652d *man/makePie.Rd
d4ab522c67a583bd41d86ec5eee56046 *man/mut.to.sigs.input.Rd
455f06f6162f7278257d58f08aff004f *man/norm.it.Rd
3d25a7d64e83a5ff3dcd06f04a080f3f *man/plotSignatures.Rd
965e616ac87f6ff448baabb73fc5d534 *man/plotTumor.Rd
770f0eaac869a4814eb8e75e22744858 *man/randomly.generated.tumors.Rd
3cf9325401f40220d3081c5275136a2d *man/sample.mut.ref.Rd
6fd10adfd4bd57715356c2b8773c635f *man/signatures.cosmic.Rd
2049c73ca6ff3e396b1ef99cc2947aa1 *man/signatures.nature2013.Rd
224eca9dcda90baede36797fc0405d2b *man/tri.counts.exome.Rd
37fa675f34cfd5781826855ae7d94c80 *man/tri.counts.genome.Rd
048d3c6b8550af47de7de73a938c4af6 *man/updateW_GR.Rd
e59c4168cfd9f8130ac8f9e0c596d1de *man/vcf.to.sigs.input.Rd
aad8868962b1206ca49b10e0977bcfc6 *man/whichSignatures.Rd
