4c431c609159d2db79fefdc53958578e *DESCRIPTION
5d82e9946ace180a66d2fe6db26780f1 *LICENSE
58b46f64ca17c3c8d5acb7e178a01c0c *NAMESPACE
f8f910c143e3cdcea61b3224a40f3216 *R/RcppExports.R
5e41df3ff904376d50222e6c471c9c98 *R/compute.gene.rank.R
93c096d91e635d0760fc07548343853c *R/data.R
3c123d90a667dbf89091dade63e0fe11 *R/inferCSN-package.R
2e246e3e7f788f8b283aa22247461187 *R/inferCSN.R
b5d3db32f4cef9ae9f7e8ff177cc7426 *R/network.visualization.R
6c4f3705ee09709f4934d5f05b934f1f *R/performance.calculate.R
633c21ecd44039a680aa2fe046148123 *R/sparse.regression.R
fe269db1439a7116cb2a24d4e67f37a6 *R/utils.R
148f587a19aab3b4544ea015b87dddad *README.md
2b55dc47c2059b70a2bd23c2d432c750 *data/example_ground_truth.rda
24c5cd3136af4400250e4f1ff753532b *data/example_matrix.rda
2578bd710b697ac23ad192dae42fb6bb *man/acc.calculate.Rd
f4cdcc8e17f628c413d1fa359e8ad538 *man/auc.calculate.Rd
2ec53a0f4a4b6070a92e031b5076fa5e *man/check.parameters.Rd
cd8c767751171c96e056e3d80893d6e8 *man/coef.inferCSN.Rd
f9066972df9d0e7510c9d8d59b8c2288 *man/compute.gene.rank.Rd
aa55b3102fb091d227253f9f6999fde8 *man/contrast.networks.Rd
d4921df3a33a7be8daaca924605ad9a2 *man/dynamic.networks.Rd
bea92ebfc3cc63a4375cd260d58a1e42 *man/example_ground_truth.Rd
369f179d33e62b3546d42b46591e907d *man/example_matrix.Rd
4cde6e83b2d3b96a27c12cd1ba8e0091 *man/figures/inferCSN.svg
41faafe98be089fc3d975ee0d031b671 *man/figures/logo.svg
660b9f63753b32fb314e0b0426641a72 *man/inferCSN-package.Rd
694d0f11897c332cd4c85a362d99449e *man/inferCSN.Rd
2d869befa13c49375ec0998047e2cda5 *man/inferCSN.fit.Rd
5193697e5a6966f2fbaabbe010781d96 *man/net.format.Rd
d83d1dcf1b41088228dfdf32d025d232 *man/network.heatmap.Rd
e9d98b090265e8645318543f37e8bf24 *man/predict.inferCSN.Rd
323bf94a8a8c9b21ca80695bc7a3b7c5 *man/prepare.performance.data.Rd
1b4a2a6e2c1eed3ca4a3a0003c5c97f6 *man/print.inferCSN.Rd
b4102c76b725683df7ea3cfcb204739c *man/sparse.regression.Rd
2a28f10fbc7f2820349d22c6db346343 *man/sub.inferCSN.Rd
f6e652deb45ec115003e4b5b8519eda7 *man/table.to.matrix.Rd
0347ffda63bae663f9354d1e0b948d57 *src/BetaVector.cpp
dadb1987bfb2f80d199a2e25b02a051d *src/CDL012LogisticSwaps.cpp
64737baec03e2641f58d5681381874d6 *src/CDL012SquaredHingeSwaps.cpp
6a4f677eff1881a88c670cf19c77773c *src/CDL012Swaps.cpp
d4f2e65104193ad8b04b23281a39cd8c *src/Grid.cpp
2ebc2a8b814581ce38dd0a53cf275ce5 *src/Grid1D.cpp
8748c274ffef69c8dc7f2c0f88228b22 *src/Grid2D.cpp
09837ef4410ca3aa193eb60b7a8f681b *src/Interface.cpp
c2fbbe606dbc01e99513a08efa77bb27 *src/Makevars
c2fbbe606dbc01e99513a08efa77bb27 *src/Makevars.win
41bc93afdbfbce896558b943b882d7e7 *src/Normalize.cpp
fb4ab9386a76250a1012fc799738465f *src/README.cpp
84dc9a9a029bfcd496c38c752eb58cf4 *src/RcppExports.cpp
b8da420687f2f9943625f9c8cddda799 *src/Test_Interface.cpp
e447698f0493b967abd0e0aaf2eca2c2 *src/include/BetaVector.h
e9aab72b23846ad7db4b0fa1e2597d09 *src/include/CD.h
3006562807501591e7979d1b5af7c039 *src/include/CDL0.h
c9262d8cc37f5ad121511ab15f1ef234 *src/include/CDL012.h
da6865571ac3a696ef96d8d10c8b7c9a *src/include/CDL012Logistic.h
c36020aa6b5463f99a6265a18d745473 *src/include/CDL012LogisticSwaps.h
75978be275c2af4e57318dda1d2ee505 *src/include/CDL012SquaredHinge.h
6acf66ba1b050b4869097aa56ed7cb10 *src/include/CDL012SquaredHingeSwaps.h
8d625ee2d1001e5fbd827359787faa78 *src/include/CDL012Swaps.h
3c65caa73f70506f9914640898d13c6a *src/include/CDSwaps.h
3e191a22fe2bee08cfd53dd8cd32f8a1 *src/include/FitResult.h
fa0e95061a24b8e548c611d4304664d0 *src/include/Grid.h
1e34795fcfd7f91aa821223794050e00 *src/include/Grid1D.h
5155c4b89da70421f47b4e82a0111866 *src/include/Grid2D.h
5f89a8eaba4ab540eb63046a1e83dbe6 *src/include/GridParams.h
3754bebf455414fb993fd10bfc967742 *src/include/Interface.h
68b70f6c4a8c08a8d7f6bb97746d3d49 *src/include/MakeCD.h
aea94cb863ab3243b5c681f9d905c175 *src/include/Model.h
8650499eeb16d4bf88397c8ed3c29c92 *src/include/Normalize.h
cdde68a3cfff76e8a18c34209800bea5 *src/include/Params.h
0816e979947d47e1e91c6327a62d641c *src/include/Test_Interface.h
f3a3cce4a45a5306180127b28e5aa66c *src/include/utils.h
8417052f3624d0c6f09b9c0d70cf8349 *src/table_to_matrix.cpp
82ebc8c76e0a000e5bf6e391edd49ff3 *src/utils.cpp
df29c8d17f04b962a3e708bf14894528 *tests/testthat.R
bcc163d15e0ca1aa9b55d2b4de9e03f1 *tests/testthat/test-inferCSN.R
