57792e4a90cd45ad5e679ddd7e8a8966 *DESCRIPTION
34de003965cf0ae8ba635e8402f9c21e *NAMESPACE
3ce67b842fff5b367a6f3160e48b4f66 *NEWS
d3a5445c0dce21eceacfaac747eb4048 *R/RcppExports.R
4c3d2b5376808427d259172da70392ee *R/checkdata.R
786825abfb139c44d4ef6d271fac4d2b *R/class-multiphylo4.R
c0e2782404632e4e3420ac9520a7eb67 *R/class-oldclasses.R
4a3e9aab8535d397ca57a92471a81f8c *R/class-phylo4.R
1699b2d699a95075a765b80bd295f9bc *R/class-phylo4d.R
a9d05b18b1ece0b945dc12071dd2a3e0 *R/class-phylomats.R
947e9b6da760529566adb44b88908513 *R/formatData.R
3c0a8f285095421ee5314355f61c3a58 *R/methods-multiphylo4.R
9f2a0e17e44c9fa3c614c5802cc39668 *R/methods-oldclasses.R
705b0cd67d20cbe976c67d76e90a784e *R/methods-phylo4.R
627c9da2a3886ec0eaf88db92e755e41 *R/methods-phylo4d.R
61e15753c5be629703b06f56e23de640 *R/pdata.R
a5ed29295d08b71d41c3f7b4004f469f *R/phylo4.R
79d1357ba705ce3047f6fd723f2748cf *R/phylobase-package.R
d721a28c9c26eb2e683b56a0e493aebf *R/phylobase.options.R
919178c29c6f2774e7aef61ce8ec32c1 *R/prune.R
1332f1db4115e45dfcf33a0c09766043 *R/readNCL.R
93fb698a1c3680303cb9987ba24404b7 *R/setAs-Methods.R
7ce4c5b175a7b95cb2d28bc91a6571d9 *R/subset.R
5d20a2ff4eed304f61688399e950551d *R/tbind.R
e7ec1fe3d832b37f360d17341700954d *R/treePlot.R
bfa6bfcf67b6f2521b8fe3973b2ffbd2 *R/treestruc.R
7e2f9cddcb119e6c862dda5fd3a14a4e *R/treewalk.R
23188418673d3aa2ef0ebe25cc69967d *R/zzz.R
5e91e230c2b1357873345e13160b5538 *build/vignette.rds
7a03af7f836f7bff48f5b9dc83b28ca8 *data/geospiza.rda
8a843dd8cd966030b246f06adee0ac13 *data/geospiza_raw.rda
26e3cdf5f9480147fd9ef4a3f8b75c3b *data/owls4.rda
c96b8393e74836b5edecfa0ea100121a *inst/doc/developer.Rnw
28ae53835f0b9e3bb9df81db7e1fd3a1 *inst/doc/developer.pdf
8e48146554c746620e575737a6b62ba0 *inst/doc/phylobase-plotvcvphylo.pdf
0beab0eea1bd99ef8c932c7fc4b25f1e *inst/doc/phylobase.Rnw
e5b6a395fca20cf630445f0c782fecd6 *inst/doc/phylobase.pdf
1fff9fa62be103e818e88abf156ffacb *inst/nexusfiles/ExContData.Rdata
c05860e96ba5feab12b1269f43a43f1b *inst/nexusfiles/MultiLineTrees.nex
a9a55d0e542ea83751c134892a17440f *inst/nexusfiles/NastyLabels.nex
72b184a406aa23c2e1711df4f3fd0275 *inst/nexusfiles/NastyLabels2.nex
fb2ae9b4cc08ab2d0959508a55c83633 *inst/nexusfiles/badnex.nex
f8225a526530eabfaa8ea117e2a82aae *inst/nexusfiles/co1.nex
f0289cdad66a374a438f582e2ab76a29 *inst/nexusfiles/minNex.nex
f77c8d44a525dbb3b06c335110ad3547 *inst/nexusfiles/minSeq.nex
5f0f9c95e0d4597b1ece4f86d355d46f *inst/nexusfiles/multiLines.Rdata
4d5d4d71cf83b54eed9811470482e8d2 *inst/nexusfiles/newick.tre
51849f725c9b6097be5f2b6453c33844 *inst/nexusfiles/noStateLabels.nex
9fec41c9d01e57b43dc8e55f1547096b *inst/nexusfiles/shorebird_underscore.nex
8c16a312ee724e2a94aecd5b2c6df0ee *inst/nexusfiles/treeRoundingError.nex
99b2fe340a17a7e8cac9cfb9bdbafe70 *inst/nexusfiles/treeWithContinuousData.nex
9d27abaf6517ea4ca9881bd9f8c0032a *inst/nexusfiles/treeWithDiscAndContData.nex
963e6a5568b7fae9291232b8abfd496c *inst/nexusfiles/treeWithDiscreteData.nex
6deabaca8bbfe8c34e60d06349f31398 *inst/nexusfiles/treeWithPolyExcludedData.nex
b6390d9653d37f920612cbe3a8d38fe5 *inst/nexusfiles/treeWithSpecialCharacters.nex
4961bb5af89e1cfd63944af5d8ee8408 *inst/nexusfiles/treeWithUnderscoreLabels.nex
334f0de6ed55dc79f59addf091097353 *inst/unitTests/Makefile
8086844a10cdb12584afe9adfa957362 *inst/unitTests/report.html
c5067d9e9dae1bc2247cf9e431c28dbc *inst/unitTests/report.txt
107c04c5faea5bb46e0b1fafa89101a9 *inst/unitTests/reportSummary.txt
8d540f61a98ccef2af93f8920618475c *inst/unitTests/runit.checkdata.R
a6fc45ff0144e1df01c424839b0b0707 *inst/unitTests/runit.class-phylo4.R
22093c976c27f764cb70116947745263 *inst/unitTests/runit.class-phylo4d.R
d4c972ca41c3416771b20998db334447 *inst/unitTests/runit.formatData.R
ab309c76ce5bf8e8936d83cfc9101af3 *inst/unitTests/runit.methods-oldclasses.R
5dfa8f8bb82a07fd2314f53920d87e02 *inst/unitTests/runit.pdata.R
570184710ed31cb9aa49316d9f2046dd *inst/unitTests/runit.phylo4.R
16a2490f1c8321a19d01103061306f28 *inst/unitTests/runit.phylobase.options.R
eeb3d78b5a6839a0a374a98668c70075 *inst/unitTests/runit.prune.R
bb7c27cacdce3708654ac9621df90f44 *inst/unitTests/runit.readNCL.R
17415b523beaabadfd325fd9c28c41bc *inst/unitTests/runit.setAs-Methods.R
db1cef590d782484f6ab2074e346835f *inst/unitTests/runit.subset.R
9605f01bf3120a6f159115c891cc0f89 *inst/unitTests/runit.tbind.R
f7f95bc1c3d4da9d00ee212c2622249a *inst/unitTests/runit.treePlot.R
b982b13abbaff1e9d4ff68145617e633 *inst/unitTests/runit.treestruc.R
faa80b9dc2cd31b6cd9911d5f17beb72 *man/addData.Rd
7eac4adb12712f4abe4260f612b90623 *man/as-methods.Rd
f33ed6665274ff4042e9dd0222bf7f74 *man/check.phylo4.Rd
76d02973f44b2d1fde5fec9afdba2801 *man/extract.tree.Rd
1626ef49f44fa5791f032b8a09600369 *man/formatData.Rd
71ce2857783000dddf6e662933c551d3 *man/geospiza.Rd
0694a0646f61b53273905c4875f823ba *man/getNode.Rd
9817cb6e0510bd1e77bec8de76a09ee7 *man/hasSingles.Rd
371ba7a7627f08dc0672c0050741b3cb *man/multiPhylo-class.Rd
321601e300a030a6089949e31072203e *man/owls4.Rd
8659f8d736a2bf014af396a5f9e7369e *man/pdata-class.Rd
56c97c6ab485240aa14f9168642ea50b *man/pdata.Rd
a66ef10cfdc21550d3279ea0f8f50dd8 *man/phylo4-accessors.Rd
5aa7238aae5b6142fdb354dd5b34f4e8 *man/phylo4-class.Rd
ddd0dd4fec00accc7f148c19a69b1b1c *man/phylo4-display.Rd
cf97edf32e508dfed8026e0cee73c65c *man/phylo4-labels.Rd
b3d7e628fd0c6cec79ec7b973d0a95d9 *man/phylo4.Rd
cabbf8e143184e512e9563a0a0f6fdab *man/phylo4d-class.Rd
669f117f49e9f1293e36b77f96c5ee80 *man/phylo4d-display.Rd
b1f47cc0b622c67ad9b9737bef05d77d *man/phylo4d-hasData.Rd
d18466dda5b57b36f32ee20445dfda2e *man/phylo4d-nData.Rd
2c7f3fba51c468ddddad7c49c315fad0 *man/phylo4d.Rd
bf16fccf990ca8e224572ec3ca8294e1 *man/phyloXXYY.Rd
489ebf1a48bba1d1c22d9d262e1a54af *man/phylobase-package.Rd
2e1bd340689db7f7dcf6dc6be718db20 *man/phylobase.options.Rd
65aed35e0269a30a3d3391810a68ad60 *man/phylobubbles.Rd
bc6e7107f8d22ec0048e8ba5688eea0d *man/phylog.Rd
3d9da10d68572c6410ba170735577e3e *man/phylomat-class.Rd
a33cc1cd71c632a8e58dde605295a21d *man/plotOneTree.Rd
b6a1ca97a7781ad0a321532b59e0e7be *man/printphylo4.Rd
73237489694eddb68720f83f7189a7c3 *man/readNCL.Rd
a16f0fb5be393c6b4e29b908549f4dbf *man/reorder-methods.Rd
5bf381b816b0ce55c6f5667ac53ca2ce *man/subset-methods.Rd
93378148a2f806b5417ae8848d271e35 *man/tdata.Rd
0cb98f96829c6f3f36a146ddc03a638c *man/tip.data.plot.Rd
71fb81b5ddb35c21359090fed128f6ee *man/treePlot-methods.Rd
75b717eb3a4258c81fe24e89bd1f6c3a *man/treewalk.Rd
4e6d8b2413ff99d94ccb4f3b132c47bc *src/GetNCL.cpp
ed0d19722e28a7d316256f2c247be33e *src/Makevars
1e0cc7f2ea27756865f63d6758ca90a8 *src/Makevars.win
ddec4d0fbc6bc1ef78d427818922deb3 *src/RcppExports.cpp
15cbb15a89b490dedacabf4c4d3f29c9 *src/ancestors.c
75c2d730a4d6bd2d32a5bed5d14ae892 *src/checkPhylo4.cpp
b06c8e98609078f1734f5c5b0614ca43 *src/descendants.c
87210b76102c11d0a2890f10494bf75c *src/ncl/ncl.h
693c38f98d7c4292b1c02b5903e67ea6 *src/ncl/nxsallocatematrix.h
18810e4eb35360b4d29e339455031321 *src/ncl/nxsassumptionsblock.h
44f64b8ad1dae0551e55f5dd52842bbf *src/ncl/nxsblock.h
994ff5c8246edc19238b40a1cf699098 *src/ncl/nxscdiscretematrix.h
f60aba75068b42972f5caf91e7f8f777 *src/ncl/nxscharactersblock.h
02cbf0a74d2b48ae5dbf54dec8ee49f0 *src/ncl/nxscxxdiscretematrix.h
c4940f98805f48981da09e891b3fc494 *src/ncl/nxsdatablock.h
f333eb2f64101a647d9e5e2d2e0794ce *src/ncl/nxsdefs.h
c9e55d1032b96ed8560abd86ed428c35 *src/ncl/nxsdiscretedatum.h
26e3921bf4a40066b12aa108d68a9e58 *src/ncl/nxsdistancedatum.h
52c9a053a25da412005439664e0597b1 *src/ncl/nxsdistancesblock.h
b4ca8c10be2bc63c9e541ba12fc4f1f1 *src/ncl/nxsemptyblock.h
e402d049dc9cccfb6f84c17b01b94e60 *src/ncl/nxsexception.h
eb76426dff57be41085931b98b59481b *src/ncl/nxsmultiformat.h
8439eb689d030847fdbb2d744cd1d5db *src/ncl/nxspublicblocks.h
5e9599513e347ae6908d4f452d4c1ef4 *src/ncl/nxsreader.h
97525aa3a9a6e3e1b1fcd85b9b8a0e9a *src/ncl/nxssetreader.h
ce696762c11d07791c9748e5e2a69ab8 *src/ncl/nxsstring.h
0d6a9a1e6e058ae4c64f36b329c13d74 *src/ncl/nxstaxablock.h
f256fe59daaf850dff6c51c2ed0a6cbf *src/ncl/nxstoken.h
abef2132281e8212850f079d3c9d8079 *src/ncl/nxstreesblock.h
1d9648bfe5d30828ca3a3ded00158d90 *src/ncl/nxsunalignedblock.h
4ddc662cda9776eedd67c97264d6cc79 *src/ncl/nxsutilcopy.h
4391c5eae372a17c7eab53f1610475b8 *src/nxsassumptionsblock.cpp
56b295c46629abb36af0b0ac24fe9ccb *src/nxsblock.cpp
bd6ab2c67c8692e0dee4af199412ad14 *src/nxscharactersblock.cpp
d16d656c5a7fd1e12c12fed72374b79f *src/nxscxxdiscretematrix.cpp
1e20aef0b59ff74cfc00a03f8650b9dc *src/nxsdatablock.cpp
68b329da9893e34099c7d8ad5cb9c940 *src/nxsdistancedatum.cpp
2b1df4db22e0d62341263f822ee84fb8 *src/nxsdistancesblock.cpp
1f4b8c9631e4e0f83c005a0d09225b5d *src/nxsemptyblock.cpp
e69a785d993df590f3d24d0ac3a4e4ac *src/nxsexception.cpp
6b3c7899ed08926301d2bdca4d659d24 *src/nxsmultiformat.cpp
c0fe29306314d1ba8e0c7616bd634e81 *src/nxspublicblocks.cpp
3a85d2f75867b359616437467f5a7b3e *src/nxsreader.cpp
39e0dadc5306b7ab5179c3dfa5e81e81 *src/nxssetreader.cpp
d3871272649e017d802c7510a8947a34 *src/nxsstring.cpp
5df0148d630a99a2e163951716cc9a27 *src/nxstaxablock.cpp
fbb0df56accf5956d8e4124010f48173 *src/nxstoken.cpp
cac62008706407b680da1d338c45c036 *src/nxstreesblock.cpp
862f00eedbcd3d97d1b4a420c246c736 *src/nxsunalignedblock.cpp
1b1d0ecd28d6eb26a29fc576091cc5c3 *src/phyloXX.c
dc5efccf4d370c4c7b0801bcbfd74a9b *src/reorderBinary.c
1944dc3ac77930043bb7ccb02f3718cd *src/reorderRobust.c
28f06504613e7585f2a63ccb43db0bf0 *tests/doRUnit.R
b56d3221733cad8532959be3ad53ecad *tests/misctests.R
a2e06fc262d134f56de54794955ed1a4 *tests/misctests.Rout.save
9f8cda1294f43f665a0a96aa7b7f7977 *tests/phylo4dtests.R
c0c856bec5255d8c8221c33df509feae *tests/phylo4dtests.Rout.save
fd985e3b18ff2d41e3c213f8b9418f27 *tests/phylosubtest.R
bf850da0487dd6cc1418fc9c1878feb0 *tests/phylosubtest.Rout.save
db2a0aaf0280429619fb99b2855c835e *tests/phylotorture.R
007e79e438636ba0bdabeec0dd772009 *tests/phylotorture.Rout.save
ee77b9eef07e90ba3fe078b858db1516 *tests/plottest.R
15656232f706ee8e21252273a6428dd8 *tests/plottest.Rout.save
c08c45b2d046fc6386a34c9fe78aea51 *tests/roundtrip.R
4c43c0a24c5b5bb280e9ef8ea0d6b966 *tests/roundtrip.Rout.save
0a268e814b425b9356091afae16a22dc *tests/test-all.R
38c287fa7b4426eab00c31412ff770be *tests/testprune.R
e30bdc5764721b2a8831818ce282f955 *tests/testprune.Rout.save
c0345feb32ec3fb041e48f6a35c2d653 *tests/testthat/test.badnex.R
0bb157159dc37de9eb20a21ef2464671 *tests/testthat/test.methods-phylo4.R
ccf8b020dab573e4a259b96b829b9923 *tests/testthat/test.treewalk.R
c96b8393e74836b5edecfa0ea100121a *vignettes/developer.Rnw
0beab0eea1bd99ef8c932c7fc4b25f1e *vignettes/phylobase.Rnw
