875c0759fa647047c647d7b1e8eaf055 *DESCRIPTION
2a2bf2d22d2ee7163335f1535cc3d264 *LICENSE
2bb89d6b62fcf5832983ab544cc5ad2c *NAMESPACE
c2d1ea5a1761c419753d99ea63ce8b9d *NEWS.md
3265525ae588141a0a31090072f7d696 *R/applyQC.R
21474aedb674ac634880c1138c0b9662 *R/individualQC.R
3ea0ee5c46f5479c31119a87e31e7229 *R/markerQC.R
1b479f05dadea652039d7781e92b83c6 *R/plinkQC.R
b32578327fb4fed8b792139c23395563 *R/utils.R
24cc4884960155ba944a3c30f65b7d1d *README.md
7c04afe7d6943d1237ff566b0837ca24 *build/vignette.rds
d292629beade662275c987333d9df6b4 *inst/doc/AncestryCheck.R
f13245aee7c7108b4c6d7157af0326df *inst/doc/AncestryCheck.Rmd
1c5f9d2ed8a5b50fd064eb91e62255b8 *inst/doc/AncestryCheck.pdf
dde2584c0ee885c47939277e2fb08ff0 *inst/doc/Genomes1000.R
4ba94c0bca3080fa299c001ecaf43e6b *inst/doc/Genomes1000.Rmd
b98b34b60c793fd54b244f16d894af6c *inst/doc/Genomes1000.pdf
dde2584c0ee885c47939277e2fb08ff0 *inst/doc/HapMap.R
db686827ec6f8465bf29629311659882 *inst/doc/HapMap.Rmd
48a66120be6e8b14c65ca443c7b56c2d *inst/doc/HapMap.pdf
072df86f49d4e58864b8420d3ee22d34 *inst/doc/plinkQC.R
402bbe6b3dc8e682c7bb0be8bbe2ddf6 *inst/doc/plinkQC.Rmd
0f30d387f9087e6034b1e491c06aa864 *inst/doc/plinkQC.pdf
fecff00ad97a2859d3d43d1832154d12 *man/checkPlink.Rd
b03a7cc52cd7c6845a97c1cf47df4c5e *man/check_ancestry.Rd
bec6577e03276a59a2d5f6348929fd13 *man/check_het_and_miss.Rd
9c06b3624bcffc8676b9d54aabe2b37a *man/check_hwe.Rd
011b400f58d00f57456a3dc8ddf22843 *man/check_maf.Rd
20e484df376e0a4b1ba61c5eed416f5d *man/check_relatedness.Rd
c4d15a2ac35c961fa9dda20aef38758e *man/check_sex.Rd
c8f4679ebb337823ada510a3d13367b0 *man/check_snp_missingness.Rd
8776906b4aee39359ec10ceceecac81e *man/cleanData.Rd
fd64392c4408bac8a1a24f039a18daed *man/evaluate_check_ancestry.Rd
6ea83939030fc5333b8bddedc18e67a0 *man/evaluate_check_het_and_miss.Rd
f8416bd3279198fa6d7987c9f0b5c470 *man/evaluate_check_relatedness.Rd
4f687d0f81484b0ea949d7d5a4023f25 *man/evaluate_check_sex.Rd
947cc2c62e51931b40e75d98a57a7a1f *man/overviewPerIndividualQC.Rd
d22421f8c68b6121721bab8e24b89aaa *man/overviewPerMarkerQC.Rd
b29573769d8d4303add156fe7387d476 *man/perIndividualQC.Rd
140bac44b447bc15a2bff39191e5edab *man/perMarkerQC.Rd
a145eb8b7d9da9bbe370033693d0ad66 *man/plinkQC.Rd
250dab0471c5325ce92e0a19615df598 *man/relatednessFilter.Rd
c645b26011880a31f06cec888e9d5cb9 *man/run_check_ancestry.Rd
1a1203796f4524dd3f661cf455c9258f *man/run_check_heterozygosity.Rd
d58b0a354f227f713dd781e0456772a8 *man/run_check_missingness.Rd
bc2ab6306d1988cff11fa3ed7e9c8957 *man/run_check_relatedness.Rd
e0874239d7c2063302b90af2556d5181 *man/run_check_sex.Rd
b1ba65254eed243d49282748b988ff28 *man/testNumerics.Rd
c321532c2963a36376c7be2ea8eb40a3 *tests/testthat/HapMap_ID2Pop.txt
7f71cda36fe7af3ace03013be8e18848 *tests/testthat/HapMap_PopColors.txt
701eb84786937dfe5af10d154c8e3a55 *tests/testthat/data.HapMapIII.eigenvec
5a2e018e96ea392df95e814ed2caed35 *tests/testthat/data.bed
502970642c8b1b63c86d199d76691de1 *tests/testthat/data.bim
069cb534a261daf899a179291141c726 *tests/testthat/data.fail-IBD.IDs
d9ba44db0379cf09e056295a50dd5d43 *tests/testthat/data.fail-ancestry.IDs
e38ff632e036ac0b520e73196d9e66fb *tests/testthat/data.fail-het.IDs
c9e4988ca7a5126f1bb74175c89f4934 *tests/testthat/data.fail-imiss.IDs
6633c5fd58a2f4b077026f83679db966 *tests/testthat/data.fail-sexcheck.IDs
08a3a9f5e4b2c411deb9df38ad92d3a4 *tests/testthat/data.fail.IDs
95a075ec7f0bef72658987eb546b03ed *tests/testthat/data.fam
47a12d88d879c865f12a1043a07e9e77 *tests/testthat/data.genome
3d9be1742b933446aea340cd8e898ab7 *tests/testthat/data.het
7810c4a155f71c00943990b74e3b4a32 *tests/testthat/data.hh
a098326bab29748c6e1149a409257811 *tests/testthat/data.imiss
8979c023e3ed864bccd184c799795fc0 *tests/testthat/data.remove.IDs
0031f5408c958423a1e8ccc9e114bed2 *tests/testthat/data.sexcheck
fe483e4e9483d5fa889da5e83ec4ec50 *tests/testthat/test-applyQC.R
daf4367b8041bc1ca58145ad155a84b3 *tests/testthat/test-individualQC.R
3342eb09a66b2fa9d8cc6cb4c6def7d8 *tests/testthat/test-markerQC.R
f13245aee7c7108b4c6d7157af0326df *vignettes/AncestryCheck.Rmd
4ba94c0bca3080fa299c001ecaf43e6b *vignettes/Genomes1000.Rmd
487101da288dc244b81568ac88658060 *vignettes/Genomes1000.md
db686827ec6f8465bf29629311659882 *vignettes/HapMap.Rmd
48ca2aad08b6639887deaef2bb98c206 *vignettes/HapMap.md
40fbf087a404a803925781f1699a28e8 *vignettes/checkAncestry.pdf
119a4f9a93e46b678662d154449cffd1 *vignettes/checkHetImiss.pdf
ec3aa9bc9e9bf694a1cc33a7621315b9 *vignettes/checkRelatedness.pdf
1d57a9a60e64f0fc36eaa55ad3ff2c66 *vignettes/checkSex.pdf
b7fbe30d27a02a2a5f066e3807f00692 *vignettes/hwe.pdf
a9f88cf94885e415c5d4ccbbc241ecf7 *vignettes/individualQC.pdf
367273bc2d20b49bec5f737601fb2b99 *vignettes/maf.pdf
f1dfcc88c2f2a43dde4fd95969afbd05 *vignettes/markerQC.pdf
8d978719632ab46b5663d8beae5bde3a *vignettes/overviewAncestryQC.pdf
7896b20e2b69d9d47596b2a7d8a913f7 *vignettes/overviewMarkerQC.pdf
634ab61035b449d92d776c467dc00329 *vignettes/overviewQC.pdf
402bbe6b3dc8e682c7bb0be8bbe2ddf6 *vignettes/plinkQC.Rmd
2c678b25dbe4823676bd308c323565c3 *vignettes/plos-genetics.csl
d4189cbd7128ea5721b796e5e6605154 *vignettes/references.bib
46ba4c61b176bf348367bdaf55dc897d *vignettes/snpmissingness.pdf
