0cb26e3384b89f8936cf9640d0497a5a *DESCRIPTION
2a2bf2d22d2ee7163335f1535cc3d264 *LICENSE
16b5b8d1b06214c8a36213a471044a0e *NAMESPACE
43e074c625608d6c925ae0079c63a329 *NEWS.md
7a2af1031ccd7a5d78127d4a6abaec37 *R/applyQC.R
5c94fa72167901c55f6d3efb9670aa00 *R/individualQC.R
8513da894c97d169bd0aa5bf83c6c1b3 *R/markerQC.R
1b479f05dadea652039d7781e92b83c6 *R/plinkQC.R
4f34ec3559b36c2613e361d25a2d8485 *R/utils.R
7622bca6899201de9c188f0dadac8bdb *README.md
7c04afe7d6943d1237ff566b0837ca24 *build/vignette.rds
cf33811d60a8297db8446fea5160b75e *inst/doc/AncestryCheck.R
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0236c6f9d26a2e49552a5d532cae3986 *inst/doc/AncestryCheck.pdf
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4b4353985ea459236d39a2d8b3b6bc7f *inst/doc/HapMap.pdf
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37be749ddf02275b733afdfcd8319697 *inst/doc/plinkQC.pdf
dfd8726581f135e2c56637ac581f8763 *man/checkPlink.Rd
d0c91a389a2aab57e14623a2c162b97e *man/check_ancestry.Rd
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c56ebc837de35f1e8b379ec5774bb98e *man/check_maf.Rd
71c5cc1a1751776b6c0abfae22cda782 *man/check_relatedness.Rd
2e6356f3451dc8246064333da148e797 *man/check_sex.Rd
290019fb6647ad73b77ed330fa9cd2e9 *man/check_snp_missingness.Rd
bb6466496c47c2690e83bbc8711cbfae *man/cleanData.Rd
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7c612beeb6e1eb4d7b99fde7367c034c *man/evaluate_check_het_and_miss.Rd
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399e29d95a8eb1cc1b19b584dd8936db *man/evaluate_check_sex.Rd
421b9d0a3e0d39bd4ef0c4cca1a636c8 *man/overviewPerIndividualQC.Rd
d22421f8c68b6121721bab8e24b89aaa *man/overviewPerMarkerQC.Rd
305886642549ea8d5a83b994d450301b *man/perIndividualQC.Rd
93f7965f725d58e27c5d156961747811 *man/perMarkerQC.Rd
a145eb8b7d9da9bbe370033693d0ad66 *man/plinkQC.Rd
250dab0471c5325ce92e0a19615df598 *man/relatednessFilter.Rd
c2c9b4cff3a820ad5e2c677c1a68315b *man/run_check_ancestry.Rd
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43ee5ee379a2ddc53696c1f3525c47f8 *man/run_check_missingness.Rd
78540a4c8350bbe0fb9f1c4b9055a0c2 *man/run_check_relatedness.Rd
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701eb84786937dfe5af10d154c8e3a55 *tests/testthat/data.HapMapIII.eigenvec
5a2e018e96ea392df95e814ed2caed35 *tests/testthat/data.bed
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47a12d88d879c865f12a1043a07e9e77 *tests/testthat/data.genome
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a098326bab29748c6e1149a409257811 *tests/testthat/data.imiss
d5856c49ed1304040d6b2a0f27bd8626 *tests/testthat/data.remove.IDs
0031f5408c958423a1e8ccc9e114bed2 *tests/testthat/data.sexcheck
fe483e4e9483d5fa889da5e83ec4ec50 *tests/testthat/test-applyQC.R
daf4367b8041bc1ca58145ad155a84b3 *tests/testthat/test-individualQC.R
3342eb09a66b2fa9d8cc6cb4c6def7d8 *tests/testthat/test-markerQC.R
061e6257b896aac67ad068c7cfb24786 *vignettes/AncestryCheck.Rmd
4ba94c0bca3080fa299c001ecaf43e6b *vignettes/Genomes1000.Rmd
487101da288dc244b81568ac88658060 *vignettes/Genomes1000.md
db686827ec6f8465bf29629311659882 *vignettes/HapMap.Rmd
48ca2aad08b6639887deaef2bb98c206 *vignettes/HapMap.md
40fbf087a404a803925781f1699a28e8 *vignettes/checkAncestry.pdf
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367273bc2d20b49bec5f737601fb2b99 *vignettes/maf.pdf
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f1dfcc88c2f2a43dde4fd95969afbd05 *vignettes/markerQC.pdf
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8d978719632ab46b5663d8beae5bde3a *vignettes/overviewAncestryQC.pdf
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1f01148beb3ec66b35a5d0bdf3b6d64b *vignettes/plinkQC.Rmd
2c678b25dbe4823676bd308c323565c3 *vignettes/plos-genetics.csl
d4189cbd7128ea5721b796e5e6605154 *vignettes/references.bib
46ba4c61b176bf348367bdaf55dc897d *vignettes/snpmissingness.pdf
79f714555e89a1dff229988c41917261 *vignettes/snpmissingness.png
