a530e42fc6f33334f4a2d09cea1549b1 *DESCRIPTION
40e0e919e83828054b54e8918ce6b5ac *NAMESPACE
dc31e1d84740aa387bbda5c613a6aff3 *NEWS.md
4faeef20e550b32a9b5c94cae5a02227 *R/check.R
560a70f14d2268efda653176274d2a36 *R/cross-val.R
0013f624f707a5268d636c2996aae7f7 *R/crs.R
019f8ec78af10d518880c76f342d2b01 *R/data.R
986e9d765f381114d8f3360af2e9d0a4 *R/emmeans.R
1f8b755c065f98cb1797ee9a7d3fecf1 *R/enum.R
c8a91094e2ccf68394d9e0853880286a *R/extra-optimization.R
84289056d53bb8ebb3c914c534c18c8c *R/families.R
b17b2fa04eca1f579009569cb5634652 *R/fit.R
6e50805b6a794096a389e95db8a05ecc *R/gather-spread.R
dee2980ec8acfa4acabac3f3f0bbc366 *R/get-index-sims.R
21b6962181a2ce015d756afaab1c5c4b *R/index.R
215cae28e84ee0df62314a436667cd0f *R/mesh.R
3d7a028fb8a1d39930a1ffdadebb8d5e *R/methods.R
aea19b2c08b7161f99b2af2cf2548b43 *R/plot-pc-matern.R
7b45b7f192a75aea4f1e9d7ae5d1c5be *R/plot.R
3496b399100f0d4d2680228181773f3e *R/predict.R
09f3e9daefc601ef4a9438cdffa426f9 *R/print.R
ac86d086f429c1cfe76c16b19ee5254e *R/priors.R
33e41eef3e72b3d6b884558dfbffcd4d *R/residuals.R
6867980ca3edbc915110aaa3ed7757dc *R/sim.R
53af80c363b7d96cfd3e4fa5d84d0cc9 *R/smoothers.R
6a4612aa068f562f48b2719a44fb9723 *R/stacking.R
b69c9d04161422e89e7f7cfca76e2055 *R/stan.R
4da7ba0d660b38080c9557a020c77861 *R/tidy.R
1d204143f09a3d57e01a66565a46e499 *R/tmb-sim.R
0aca75ccd2e7407f8ece53f6f40a10e3 *R/utils.R
4c3aa8ac4bb702d2026c23c33223f85c *R/visreg.R
b8769d33f7b07fdb4e845f32de28f685 *R/zzz.R
ea124a494ad7922985532ad3b308e4d5 *build/partial.rdb
794e8ea686451595233aba3a02e0a599 *build/vignette.rds
63fda95f58862eb4ea18c7a7fb99a8d4 *data/bc_coast.rda
00054dd3f19cfd2ce49fc85de0818346 *data/pcod.rda
1a6d8e7c21acaacf314fbe619b3736a1 *data/pcod_2011.rda
428651fdf00c28642d416f24e6b68ba8 *data/pcod_mesh_2011.rda
d48f78ec8f389ccbd8648ec3e89c08ce *data/qcs_grid.rda
fa77716c8e7c089d5dd4be91e0ec985a *inst/CITATION
957a1d5820b6fb89166a744971bdae1e *inst/COPYRIGHTS
a5472570b1293a6cb3d187563bc56dce *inst/doc/basic-intro.R
72d1b604ee19abeb8c2642abf2777832 *inst/doc/basic-intro.Rmd
62127f53d97b547c8a379a451746b953 *inst/doc/basic-intro.html
03f7c48fac592020ca4a40b655958e06 *inst/doc/bayesian.R
a38d2ee6bd0f74159f1ce4aff7e7107b *inst/doc/bayesian.Rmd
24f6d16c6e645b447b9f428880291839 *inst/doc/bayesian.html
99211a9f0c015e68429f057113f593ff *inst/doc/cross-validation.R
54f1e5931eeca9504e1ac7ece0c315e7 *inst/doc/cross-validation.Rmd
4eae919c166927a416b19bab26d3d5cb *inst/doc/cross-validation.html
99211a9f0c015e68429f057113f593ff *inst/doc/delta-models.R
cef9ca9198ecf2d1dce18616aad406ab *inst/doc/delta-models.Rmd
711a6dc437ad6aedb426bd93f6ece296 *inst/doc/delta-models.html
575998117f6f1cd1a30e4481ca6d4b6e *inst/doc/ggeffects.R
52f657bcf829d4cfdde3b4ac48d31be9 *inst/doc/ggeffects.Rmd
71d4afd836969f36dd242a26f37d3be7 *inst/doc/ggeffects.html
a5472570b1293a6cb3d187563bc56dce *inst/doc/index-standardization.R
d5364a55de2dfc0d85feeb894e5ce521 *inst/doc/index-standardization.Rmd
67656ff90c560977fccbc72d0f4d800e *inst/doc/index-standardization.html
2cbbc0e2b12f3de2a0c02dbc90227a23 *inst/doc/model-description.R
350fbfb1f09831776b153f60e243b88e *inst/doc/model-description.Rmd
57ca049cc04a04ef0f02d4089beb0e7e *inst/doc/model-description.html
0a21465289aab2375b6b4a8b6daf919b *inst/doc/pretty-plots.R
5fa2753d17fe92e19b93680237b3bd32 *inst/doc/pretty-plots.Rmd
b5db6a1a67c17b39e9cc67e797491acb *inst/doc/pretty-plots.html
59c323c97b1d3763aafeb530c1c73ace *inst/doc/residual-checking.R
80351f52c7d7857f9b826003979cddf8 *inst/doc/residual-checking.Rmd
b6610c75c8e54ff8a595b4276366e583 *inst/doc/residual-checking.html
99211a9f0c015e68429f057113f593ff *inst/doc/spatial-trend-models.R
f2054673d6ca2157cb715c1e990998bb *inst/doc/spatial-trend-models.Rmd
ef3138d1b3b3679aee2f1ba5f1c6f151 *inst/doc/spatial-trend-models.html
99211a9f0c015e68429f057113f593ff *inst/doc/threshold-models.R
d1047f7d7640d5de9313f34e348ce7f3 *inst/doc/threshold-models.Rmd
41fb5f498a2ce460b4b923713868c98f *inst/doc/threshold-models.html
578a1467df03ffe9aa9978bf1f5bbdf7 *inst/doc/visreg.R
3d97c39f55305125baa24b0699e4d999 *inst/doc/visreg.Rmd
5cab6b3d2b4392b3e349e63f4ca51bdc *inst/doc/visreg.html
846c77a9d518f8d8c61d314817e0d3b7 *man/Effect.sdmTMB.Rd
729a01b542ec42dbec7b644e1241b7f9 *man/add_barrier_mesh.Rd
b7334ae4940d3cfb60a09d8be5b9400a *man/add_utm_columns.Rd
bad5f882797969094cfffa41d35b4536 *man/bc_coast.Rd
d0b2e3e204f2d105ea2c8c36d7e34e52 *man/dharma_residuals.Rd
bc06ed2459e9fc0e39ab820e375f145e *man/emmeans.sdmTMB.Rd
bc58a4b281d966262aed264186380329 *man/extract_mcmc.Rd
96dc5e7fbbb1af5bc264efcc786febe2 *man/families.Rd
4a026a3dfd433f23d6a6709a6d44457c *man/figures/README-inla-mesh-1.png
72f70301d2431438d2f42a8d9903ee27 *man/figures/README-plot-cog-1.png
3e5171d8440f53677acf1ca35ac731ee *man/figures/README-plot-dharma-1.png
3f0c2fb9ebe8a29baed3fd88c8d86353 *man/figures/README-plot-index-1.png
ebb56940b2ee56579b4722d351e6ad4f *man/figures/README-plot-mvn-1.png
69dc7f65208c3f04b79ef4e1a6cde883 *man/figures/README-plot-pc-matern-1.png
cd81ea94e05e971ccd612c8b02b4efc4 *man/figures/README-plot-pred-mvn-1.png
03cf874af1f466ec532820bf9a167e14 *man/figures/README-plot-predictions-1.png
572d0031eee874e9aa799d53a7c71b5b *man/figures/README-plot-quant-resid-1.png
31b41a50bd4e89eab74e87874697e9e4 *man/figures/README-plot-sim-dat-1.png
dab5d616c943386964e7b610399298ab *man/figures/README-plot-smooth-1.png
213efa4ee97101b4b8ab1fe4e25cf713 *man/figures/README-plot-visreg-link-1.png
8f695ac73d9f6dff3a69b6ad03fa5585 *man/figures/README-plot-visreg-response-1.png
14722d9fc39884c776f466acec8494d0 *man/figures/README-plot-zeta-1.png
cb1e46f469cfbbbde29c8b5113e1d789 *man/figures/lifecycle-archived.svg
c0d2e5a54f1fa4ff02bf9533079dd1f7 *man/figures/lifecycle-defunct.svg
a1b8c987c676c16af790f563f96cbb1f *man/figures/lifecycle-deprecated.svg
c3978703d8f40f2679795335715e98f4 *man/figures/lifecycle-experimental.svg
952b59dc07b171b97d5d982924244f61 *man/figures/lifecycle-maturing.svg
27b879bf3677ea76e3991d56ab324081 *man/figures/lifecycle-questioning.svg
53b3f893324260b737b3c46ed2a0e643 *man/figures/lifecycle-stable.svg
1c1fe7a759b86dc6dbcbe7797ab8246c *man/figures/lifecycle-superseded.svg
483211232b93e2cd662b1c7d422fe899 *man/figures/logo-sdmTMB.png
cc7d6c7dceb680110a6106a6abb4c0a4 *man/gather_sims.Rd
7e39a65f8cf42f688ac07f0654b9da09 *man/get_index.Rd
c0ebfc63262ac6ef04cb6df78e4f2146 *man/get_index_sims.Rd
92e790187b007092508432373811b36b *man/get_pars.Rd
9ec2b05338e003055bb62174b4a94057 *man/ggplot2_installed.Rd
57abf663b4242bc6b54689374a89e386 *man/inla_installed.Rd
218d80668746e91c30955aab786e21aa *man/make_mesh.Rd
cdd108397d7b4254f2fce213df75b0a8 *man/pcod.Rd
7da96ca7c8cdd7890c1ac34dac3899ef *man/pcod_2011.Rd
c57727e5a7e9c8b2f403013032863dd3 *man/pcod_mesh_2011.Rd
d7e6957c84630dc159778fa997770071 *man/plot_anisotropy.Rd
4bdfa24b649653ed8dd87e32d7767586 *man/plot_pc_matern.Rd
1782a131144bf08a753135ca1e4cbd19 *man/plot_smooth.Rd
4712ea6ecf046d03cda4a5bb0a94c9cd *man/predict.sdmTMB.Rd
fabb51f1d7a419787595906bb332362f *man/priors.Rd
13e2843f2171442be23f78b85bde41de *man/qcs_grid.Rd
d749e850447ef3e2cb1d8e98d7c91319 *man/reexports.Rd
e8667830e10440ff033a9e17970a3312 *man/residuals.sdmTMB.Rd
10d74f376c62a524a75a63595b308228 *man/run_extra_optimization.Rd
8a91191c6ba1463f542b38c44711399f *man/sanity.Rd
e41c39002517917752c57392a32ab4d7 *man/sdmTMB.Rd
6a43c3c9e689ca3048544930358783e1 *man/sdmTMB_cv.Rd
70b08a40353edcafc25bd317922af8d5 *man/sdmTMB_simulate.Rd
c735942e34db3931d0fbc3f955bb2b83 *man/sdmTMB_stacking.Rd
2ee8b817b040657fb385621b59dcb4b1 *man/sdmTMBcontrol.Rd
7f1d2dd4561bddfcd506409e53151809 *man/simulate.sdmTMB.Rd
23b71f463077240def1ae8b4dd45283f *man/tidy.sdmTMB.Rd
0f2edea5a3c840b787affd8fc32051ef *man/visreg_delta.Rd
d4ef7a133844e79cd6731af11bc0051c *src/Makevars
5a935b5d4d590708e306d49c1bef0bae *src/sdmTMB.cpp
e4723674da5a966e5e9c707dc953a1f9 *src/utils.h
3a427a51e53b4c6589756f495117588c *tests/testthat.R
a3fb1d94e0ab53d90933d0ff35aab759 *tests/testthat/Rplots.pdf
7936c88ac17e5544b798be84bb8403a9 *tests/testthat/test-1-fit-basic.R
a0ba05a196534501bdc021ed2589d7c5 *tests/testthat/test-2-fit-less-basic.R
3fcad973e2cb5676b8ffe8a19dd058ec *tests/testthat/test-3-families.R
2bf6d5e7fc2380f326c085fd6e73a3ec *tests/testthat/test-4-index-calculation.R
94e2fe0938bdfe920fbcc246b16c4065 *tests/testthat/test-5-residuals.R
bfcf8adffb20a7bc14a70ab4b20cc877 *tests/testthat/test-6-tmb-simulation.R
6e9158b48db14ceb133412b74bac4237 *tests/testthat/test-7-visreg.R
6aa7a9528ab6898c6558d08b1c84f9df *tests/testthat/test-8-delta2.R
9d231c86fbec42f78fbe9a9ee01e42d0 *tests/testthat/test-9-mvn-simulation.R
f110528bda919d636803b30b5af4d0aa *tests/testthat/test-barrier.R
dc38ff95cbf5abc673255b891094049b *tests/testthat/test-control.R
1836b6e79f1598065d17d276046afd5e *tests/testthat/test-cross-validation.R
5aa0664c9ed971b1bb6b2cccd7aeb106 *tests/testthat/test-delta.R
948ec9973a4772bc180a0b6065b1045d *tests/testthat/test-deprecated-args.R
35fd35f4b0a25f02ee0acc813cb710b6 *tests/testthat/test-dharma.R
f6720403c5c09863ac5d80d62a862181 *tests/testthat/test-extra-optimization.R
fa468b1a24494b4fac8dd74eca1b4286 *tests/testthat/test-forecasting.R
5ff7c6962d0bd81dfa872302f1fad53c *tests/testthat/test-link-prediction.R
d2ef64143b11fc33b6c46745cf92d6c4 *tests/testthat/test-links.R
2f57dae93072aa920c899c03d1c0ea0a *tests/testthat/test-mcmc-resid.R
1e0313d25d4cfc8ea1a6826201da17dc *tests/testthat/test-mix.R
bd2963730cd20860bf442b666c8fbc0c *tests/testthat/test-nonstationary.R
306bc50fcd310ec03f02c5d7f3ed6ce5 *tests/testthat/test-offset.R
fb852e6474a94668891769ece78dbff6 *tests/testthat/test-parameter-bounds.R
9ba35d0198d884f42b5d31595b0769e6 *tests/testthat/test-plots.R
717a38e706fda52a1573b571f2bc6b32 *tests/testthat/test-prediction-missing-years.R
ca6071f48662ebe57d06fe98e1722094 *tests/testthat/test-priors.R
9f641a032022dd4d0a66cabb5734bfef *tests/testthat/test-random-intercepts.R
d6d86c87c1b6dab06f9bbb32c75753e6 *tests/testthat/test-reml.R
e2ddfa8d17b0a6b6141dc6f444545086 *tests/testthat/test-sanity.R
db3efa7e0e94f8e282f954afb76537ba *tests/testthat/test-sdmTMB-simulate.R
68013f1b6491dbaecc8b8bd61759f141 *tests/testthat/test-smooths.R
792ff36fab5c72aa872774dbe09f9266 *tests/testthat/test-spatial-varying.R
478227a2cc6bee5d34c90d3058ce5da4 *tests/testthat/test-threshold-models.R
604af5b70b8048181a2a5be8b5a3dae6 *tests/testthat/test-time-varying.R
ac66d8a7e1ae0ae0a3ac99476b09c4f5 *tests/testthat/test-tmb-simulation.R
afe50b419ddf60851b9d08e59ef03ce7 *tests/testthat/test-utm-conversions.R
53cc72d3fca5f0c8651427caa7e032d2 *tests/testthat/test-varying-epsilon.R
1cc814aa16bf834e4510d156944c1bc5 *tests/testthat/test-without-spatial.R
72d1b604ee19abeb8c2642abf2777832 *vignettes/basic-intro.Rmd
a38d2ee6bd0f74159f1ce4aff7e7107b *vignettes/bayesian.Rmd
54f1e5931eeca9504e1ac7ece0c315e7 *vignettes/cross-validation.Rmd
cef9ca9198ecf2d1dce18616aad406ab *vignettes/delta-models.Rmd
52f657bcf829d4cfdde3b4ac48d31be9 *vignettes/ggeffects.Rmd
d5364a55de2dfc0d85feeb894e5ce521 *vignettes/index-standardization.Rmd
52c5c33bd22ba6769eb689414a8e62e4 *vignettes/mee.csl
350fbfb1f09831776b153f60e243b88e *vignettes/model-description.Rmd
5fa2753d17fe92e19b93680237b3bd32 *vignettes/pretty-plots.Rmd
ec2e9f81763724aa650946a69fa435fb *vignettes/refs.bib
80351f52c7d7857f9b826003979cddf8 *vignettes/residual-checking.Rmd
f2054673d6ca2157cb715c1e990998bb *vignettes/spatial-trend-models.Rmd
d1047f7d7640d5de9313f34e348ce7f3 *vignettes/threshold-models.Rmd
3d97c39f55305125baa24b0699e4d999 *vignettes/visreg.Rmd
