Last updated on 2025-12-20 09:49:45 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.5.0 | 64.64 | 363.98 | 428.62 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.5.0 | 40.41 | 216.64 | 257.05 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.5.0 | 120.00 | 549.70 | 669.70 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.5.0 | 121.00 | 534.81 | 655.81 | ERROR | |
| r-devel-windows-x86_64 | 1.5.0 | 61.00 | 330.00 | 391.00 | OK | |
| r-patched-linux-x86_64 | 1.5.0 | 73.64 | 309.42 | 383.06 | OK | |
| r-release-linux-x86_64 | 1.5.0 | 61.32 | 312.92 | 374.24 | OK | |
| r-release-macos-arm64 | 1.5.0 | OK | ||||
| r-release-macos-x86_64 | 1.5.0 | 41.00 | 300.00 | 341.00 | OK | |
| r-release-windows-x86_64 | 1.5.0 | 67.00 | 287.00 | 354.00 | OK | |
| r-oldrel-macos-arm64 | 1.5.0 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.5.0 | 42.00 | 250.00 | 292.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.5.0 | 89.00 | 396.00 | 485.00 | NOTE |
Version: 1.5.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/13s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(familiar)
>
> suppressWarnings(
+ testthat::test_check("familiar"),
+ classes = c("deprecation_warning")
+ )
Starting 2 test processes.
Saving _problems/test-sample_weights-4.R
Saving _problems/test-transformation-9.R
[ FAIL 2 | WARN 0 | SKIP 72 | PASS 511 ]
══ Skipped tests (72) ══════════════════════════════════════════════════════════
• On CRAN (71): 'test-0_plot_ice_a.R:3:1', 'test-0_plot_calibration.R:3:1',
'test-0_plot_ice_b.R:3:1', 'test-0_plot_sample_clustering_a.R:3:1',
'test-0_plot_sample_clustering_b.R:3:1',
'test-0_preprocessing_clustering.R:2:1', 'test-apply.R:2:1',
'test-as_data_object.R:1:1', 'test-batch_normalisation.R:2:1',
'test-0_vimp_rfsrc_S4.R:8:1', 'test-collection_labels.R:2:1',
'test-dynamic_model_loading.R:1:1', 'test-experiment_data.R:2:1',
'test-experimental_design.R:1:1', 'test-export_calibration_info.R:3:1',
'test-export_hyperparameters.R:3:1', 'test-export_ice.R:2:1',
'test-export_prediction_data.R:2:1',
'test-export_risk_stratification_info.R:2:1',
'test-export_sample_clustering.R:2:1', 'test-familiar_data_creation.R:2:1',
'test-function_wrappers.R:1:1', 'test-hyperparameter_optimisation.R:2:1',
'test-imputation.R:2:1', 'test-general_normalisation.R:1:1',
'test-learner_cox_s4.R:6:1', 'test-learner_glm_S4.R:6:1',
'test-learner_glmnet_S4.R:10:1', 'test-learner_mboost_lm_S4.R:5:1',
'test-learner_mboost_tree_S4.R:5:1', 'test-learner_naive_bayes_S4.R:6:1',
'test-learner_ranger_s4.R:7:1', 'test-learner_rfsrc_s4.R:7:1',
'test-learner_survival_regression_S4.R:7:1', 'test-learner_knn_S4.R:6:1',
'test-learner_svm_S4.R:11:1', 'test-learner_xgboost_dart_S4.R:7:1',
'test-learner_xgboost_lm_S4.R:7:1', 'test-learner_xgboost_tree_S4.R:7:1',
'test-metric_auc_roc_S4.R:4:1', 'test-metric_brier_S4.R:4:1',
'test-metric_concordance_index_S4.R:4:1', 'test-metric_regression_S4.R:6:1',
'test-metric_confusion_matrix_metrics_S4.R:6:1', 'test-naive_model.R:1:1',
'test-novelty_isolation_forest_S4.R:6:1', 'test-object_conversion.R:2:1',
'test-novelty_none_S4.R:6:1', 'test-parallel_backend.R:1:1',
'test-plot_auc_curves.R:3:1', 'test-plot_confusion_matrix.R:3:1',
'test-plot_decision_curve.R:3:1', 'test-plot_feature_similarity.R:3:1',
'test-plot_kaplan_meier_curve.R:3:1', 'test-plot_model_performance.R:3:1',
'test-plot_model_ranks.R:2:1',
'test-plot_permutation_variable_importance.R:3:1',
'test-plot_univariate_importance.R:3:1', 'test-process_time.R:1:1',
'test-predict.R:3:1', 'test-stratification.R:1:1',
'test-subsampling_functions.R:2:1', 'test-train_familiar.R:1:1',
'test-vimp_concordance_S4.R:5:1', 'test-vimp_corelearn_S4.R:11:1',
'test-vimp_correlation_S4.R:5:1', 'test-vimp_mutual_information_S4.R:7:1',
'test-vimp_ranger_S4.R:7:1', 'test-vimp_regression_S4.R:8:1',
'test-vimp_glmnet_S4.R:10:1', 'test-vimp_table.R:1:1'
• Testing object updates should be done manually. (1):
'test-update_object.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-sample_weights.R:4:1'): (code run outside of `test_that()`) ────
Error in ``[.data.table`(temp_data, , `:=`("series_id", seq_len(.N)), by = c("sample_id", "batch_id"))`: attempt access index 3/3 in VECTOR_ELT
Backtrace:
▆
1. └─familiar:::test_create_good_data(outcome_type = "binomial") at test-sample_weights.R:4:1
2. ├─familiar::as_data_object(...)
3. └─familiar::as_data_object(...)
4. └─familiar (local) .local(data, ...)
5. └─familiar:::.finish_data_preparation(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-transformation.R:7:3'): (code run outside of `test_that()`) ────
Error in ``[.data.table`(data, , `:=`("repetition_id", seq_len(.N)), by = c("sample_id", "batch_id", "series_id", outcome_cols))`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─familiar:::test_create_synthetic_series_data(...) at test-transformation.R:7:3
2. ├─familiar::as_data_object(...)
3. └─familiar::as_data_object(...)
4. └─familiar (local) .local(data, ...)
5. └─familiar:::.finish_data_preparation(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
[ FAIL 2 | WARN 0 | SKIP 72 | PASS 511 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.5.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [57s/57s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(familiar)
>
> suppressWarnings(
+ testthat::test_check("familiar"),
+ classes = c("deprecation_warning")
+ )
Starting 2 test processes.
Saving _problems/test-sample_weights-4.R
Saving _problems/test-transformation-9.R
[ FAIL 2 | WARN 0 | SKIP 72 | PASS 511 ]
══ Skipped tests (72) ══════════════════════════════════════════════════════════
• On CRAN (71): 'test-0_plot_calibration.R:3:1', 'test-0_plot_ice_a.R:3:1',
'test-0_plot_ice_b.R:3:1', 'test-0_plot_sample_clustering_b.R:3:1',
'test-0_plot_sample_clustering_a.R:3:1',
'test-0_preprocessing_clustering.R:2:1', 'test-apply.R:2:1',
'test-as_data_object.R:1:1', 'test-batch_normalisation.R:2:1',
'test-collection_labels.R:2:1', 'test-0_vimp_rfsrc_S4.R:8:1',
'test-dynamic_model_loading.R:1:1', 'test-experimental_design.R:1:1',
'test-export_calibration_info.R:3:1', 'test-experiment_data.R:2:1',
'test-export_hyperparameters.R:3:1', 'test-export_ice.R:2:1',
'test-export_risk_stratification_info.R:2:1',
'test-export_prediction_data.R:2:1', 'test-familiar_data_creation.R:2:1',
'test-export_sample_clustering.R:2:1', 'test-function_wrappers.R:1:1',
'test-general_normalisation.R:1:1', 'test-imputation.R:2:1',
'test-hyperparameter_optimisation.R:2:1', 'test-learner_cox_s4.R:6:1',
'test-learner_glm_S4.R:6:1', 'test-learner_glmnet_S4.R:10:1',
'test-learner_mboost_lm_S4.R:5:1', 'test-learner_mboost_tree_S4.R:5:1',
'test-learner_naive_bayes_S4.R:6:1', 'test-learner_ranger_s4.R:7:1',
'test-learner_rfsrc_s4.R:7:1', 'test-learner_survival_regression_S4.R:7:1',
'test-learner_knn_S4.R:6:1', 'test-learner_xgboost_dart_S4.R:7:1',
'test-learner_svm_S4.R:11:1', 'test-learner_xgboost_lm_S4.R:7:1',
'test-learner_xgboost_tree_S4.R:7:1', 'test-metric_auc_roc_S4.R:4:1',
'test-metric_brier_S4.R:4:1', 'test-metric_concordance_index_S4.R:4:1',
'test-metric_confusion_matrix_metrics_S4.R:6:1', 'test-naive_model.R:1:1',
'test-novelty_isolation_forest_S4.R:6:1', 'test-metric_regression_S4.R:6:1',
'test-novelty_none_S4.R:6:1', 'test-object_conversion.R:2:1',
'test-parallel_backend.R:1:1', 'test-plot_auc_curves.R:3:1',
'test-plot_confusion_matrix.R:3:1', 'test-plot_decision_curve.R:3:1',
'test-plot_feature_similarity.R:3:1', 'test-plot_kaplan_meier_curve.R:3:1',
'test-plot_model_performance.R:3:1',
'test-plot_permutation_variable_importance.R:3:1',
'test-plot_univariate_importance.R:3:1', 'test-plot_model_ranks.R:2:1',
'test-process_time.R:1:1', 'test-predict.R:3:1', 'test-stratification.R:1:1',
'test-train_familiar.R:1:1', 'test-subsampling_functions.R:2:1',
'test-vimp_concordance_S4.R:5:1', 'test-vimp_corelearn_S4.R:11:1',
'test-vimp_correlation_S4.R:5:1', 'test-vimp_mutual_information_S4.R:7:1',
'test-vimp_ranger_S4.R:7:1', 'test-vimp_regression_S4.R:8:1',
'test-vimp_table.R:1:1', 'test-vimp_glmnet_S4.R:10:1'
• Testing object updates should be done manually. (1):
'test-update_object.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-sample_weights.R:4:1'): (code run outside of `test_that()`) ────
Error in ``[.data.table`(temp_data, , `:=`("series_id", seq_len(.N)), by = c("sample_id", "batch_id"))`: attempt access index 3/3 in VECTOR_ELT
Backtrace:
▆
1. └─familiar:::test_create_good_data(outcome_type = "binomial") at test-sample_weights.R:4:1
2. ├─familiar::as_data_object(...)
3. └─familiar::as_data_object(...)
4. └─familiar (local) .local(data, ...)
5. └─familiar:::.finish_data_preparation(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-transformation.R:7:3'): (code run outside of `test_that()`) ────
Error in ``[.data.table`(data, , `:=`("repetition_id", seq_len(.N)), by = c("sample_id", "batch_id", "series_id", outcome_cols))`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─familiar:::test_create_synthetic_series_data(...) at test-transformation.R:7:3
2. ├─familiar::as_data_object(...)
3. └─familiar::as_data_object(...)
4. └─familiar (local) .local(data, ...)
5. └─familiar:::.finish_data_preparation(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
[ FAIL 2 | WARN 0 | SKIP 72 | PASS 511 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.5.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [54s/47s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(familiar)
>
> suppressWarnings(
+ testthat::test_check("familiar"),
+ classes = c("deprecation_warning")
+ )
Starting 2 test processes.
Saving _problems/test-sample_weights-4.R
Saving _problems/test-transformation-9.R
[ FAIL 2 | WARN 0 | SKIP 72 | PASS 511 ]
══ Skipped tests (72) ══════════════════════════════════════════════════════════
• On CRAN (71): 'test-0_plot_calibration.R:3:1', 'test-0_plot_ice_a.R:3:1',
'test-0_plot_ice_b.R:3:1', 'test-0_plot_sample_clustering_b.R:3:1',
'test-0_plot_sample_clustering_a.R:3:1',
'test-0_preprocessing_clustering.R:2:1', 'test-apply.R:2:1',
'test-as_data_object.R:1:1', 'test-batch_normalisation.R:2:1',
'test-0_vimp_rfsrc_S4.R:8:1', 'test-collection_labels.R:2:1',
'test-dynamic_model_loading.R:1:1', 'test-experiment_data.R:2:1',
'test-experimental_design.R:1:1', 'test-export_calibration_info.R:3:1',
'test-export_hyperparameters.R:3:1', 'test-export_ice.R:2:1',
'test-export_prediction_data.R:2:1',
'test-export_risk_stratification_info.R:2:1',
'test-export_sample_clustering.R:2:1', 'test-familiar_data_creation.R:2:1',
'test-function_wrappers.R:1:1', 'test-general_normalisation.R:1:1',
'test-hyperparameter_optimisation.R:2:1', 'test-imputation.R:2:1',
'test-learner_cox_s4.R:6:1', 'test-learner_glm_S4.R:6:1',
'test-learner_glmnet_S4.R:10:1', 'test-learner_mboost_lm_S4.R:5:1',
'test-learner_mboost_tree_S4.R:5:1', 'test-learner_naive_bayes_S4.R:6:1',
'test-learner_ranger_s4.R:7:1', 'test-learner_rfsrc_s4.R:7:1',
'test-learner_survival_regression_S4.R:7:1', 'test-learner_knn_S4.R:6:1',
'test-learner_svm_S4.R:11:1', 'test-learner_xgboost_dart_S4.R:7:1',
'test-learner_xgboost_lm_S4.R:7:1', 'test-metric_auc_roc_S4.R:4:1',
'test-learner_xgboost_tree_S4.R:7:1', 'test-metric_brier_S4.R:4:1',
'test-metric_concordance_index_S4.R:4:1',
'test-metric_confusion_matrix_metrics_S4.R:6:1',
'test-metric_regression_S4.R:6:1', 'test-naive_model.R:1:1',
'test-novelty_none_S4.R:6:1', 'test-novelty_isolation_forest_S4.R:6:1',
'test-object_conversion.R:2:1', 'test-parallel_backend.R:1:1',
'test-plot_auc_curves.R:3:1', 'test-plot_confusion_matrix.R:3:1',
'test-plot_decision_curve.R:3:1', 'test-plot_feature_similarity.R:3:1',
'test-plot_kaplan_meier_curve.R:3:1', 'test-plot_model_performance.R:3:1',
'test-plot_model_ranks.R:2:1',
'test-plot_permutation_variable_importance.R:3:1',
'test-plot_univariate_importance.R:3:1', 'test-predict.R:3:1',
'test-process_time.R:1:1', 'test-stratification.R:1:1',
'test-subsampling_functions.R:2:1', 'test-train_familiar.R:1:1',
'test-vimp_concordance_S4.R:5:1', 'test-vimp_corelearn_S4.R:11:1',
'test-vimp_correlation_S4.R:5:1', 'test-vimp_mutual_information_S4.R:7:1',
'test-vimp_ranger_S4.R:7:1', 'test-vimp_glmnet_S4.R:10:1',
'test-vimp_regression_S4.R:8:1', 'test-vimp_table.R:1:1'
• Testing object updates should be done manually. (1):
'test-update_object.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-sample_weights.R:4:1'): (code run outside of `test_that()`) ────
Error in ``[.data.table`(temp_data, , `:=`("series_id", seq_len(.N)), by = c("sample_id", "batch_id"))`: attempt access index 3/3 in VECTOR_ELT
Backtrace:
▆
1. └─familiar:::test_create_good_data(outcome_type = "binomial") at test-sample_weights.R:4:1
2. ├─familiar::as_data_object(...)
3. └─familiar::as_data_object(...)
4. └─familiar (local) .local(data, ...)
5. └─familiar:::.finish_data_preparation(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
── Error ('test-transformation.R:7:3'): (code run outside of `test_that()`) ────
Error in ``[.data.table`(data, , `:=`("repetition_id", seq_len(.N)), by = c("sample_id", "batch_id", "series_id", outcome_cols))`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─familiar:::test_create_synthetic_series_data(...) at test-transformation.R:7:3
2. ├─familiar::as_data_object(...)
3. └─familiar::as_data_object(...)
4. └─familiar (local) .local(data, ...)
5. └─familiar:::.finish_data_preparation(...)
6. ├─...[]
7. └─data.table:::`[.data.table`(...)
[ FAIL 2 | WARN 0 | SKIP 72 | PASS 511 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.5.0
Check: installed package size
Result: NOTE
installed size is 6.3Mb
sub-directories of 1Mb or more:
R 4.0Mb
help 1.2Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64