Last updated on 2025-12-20 09:49:49 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.6.2 | 21.38 | 430.61 | 451.99 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.6.2 | 12.09 | 266.73 | 278.82 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.6.2 | 35.00 | 627.29 | 662.29 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.6.2 | 33.00 | 564.39 | 597.39 | ERROR | |
| r-devel-windows-x86_64 | 1.6.2 | 24.00 | 384.00 | 408.00 | OK | |
| r-patched-linux-x86_64 | 1.6.2 | 24.43 | 365.54 | 389.97 | OK | |
| r-release-linux-x86_64 | 1.6.2 | 19.65 | 366.56 | 386.21 | OK | |
| r-release-macos-arm64 | 1.6.2 | OK | ||||
| r-release-macos-x86_64 | 1.6.2 | 14.00 | 312.00 | 326.00 | OK | |
| r-release-windows-x86_64 | 1.6.2 | 22.00 | 359.00 | 381.00 | OK | |
| r-oldrel-macos-arm64 | 1.6.2 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.6.2 | 15.00 | 315.00 | 330.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.6.2 | 32.00 | 465.00 | 497.00 | OK |
Version: 1.6.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘demo.Rmd’ using rmarkdown
---------------------------------------------------------------------------
- Longitudinal clustering using: longitudinal k-means (KML)
---------------------------------------------------------------------------
Method arguments:
time: getOption("latrend.time")
id: getOption("latrend.id")
nClusters: 2
nbRedrawing: 1
maxIt: 200
imputationMethod:"copyMean"
distanceName: "euclidean"
power: 2
distance: function() {}
centerMethod: meanNA
startingCond: "nearlyAll"
nbCriterion: 1000
scale: TRUE
response: "Y"
---------------------------------------------------------------------------
Checking and transforming the training data format.
Preparing the training data for fitting...
Fitting the method...
Done fitting the method (0.17 secs)
---------------------------------------------------------------------------
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘demo.Rmd’
--- re-building ‘implement.Rmd’ using rmarkdown
---------------------------------------------------------------------------
- Longitudinal clustering using: stratify
---------------------------------------------------------------------------
Method arguments:
center: meanNA
nClusters: NaN
clusterNames: NULL
time: getOption("latrend.time")
id: getOption("latrend.id")
name: "stratify"
response: "Y"
stratify: Y[1] > 1.6
---------------------------------------------------------------------------
Checking and transforming the training data format.
Preparing the training data for fitting...
Fitting the method...
Done fitting the method (0.052 secs)
---------------------------------------------------------------------------
---------------------------------------------------------------------------
- Longitudinal clustering using: stratify
---------------------------------------------------------------------------
Method arguments:
center: mean
nClusters: NaN
clusterNames: NULL
time: getOption("latrend.time")
id: getOption("latrend.id")
name: "stratify"
response: "Y"
stratify: stratfun
---------------------------------------------------------------------------
Checking and transforming the training data format.
Preparing the training data for fitting...
Fitting the method...
Done fitting the method (0.11 secs)
---------------------------------------------------------------------------
Quitting from implement.Rmd:115-124 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
---
Backtrace:
▆
1. ├─casedata[, `:=`(Intercept, coef(lm(Y ~ Time, .SD))[1]), by = Traj]
2. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'implement.Rmd' failed with diagnostics:
attempt access index 8/8 in VECTOR_ELT
--- failed re-building ‘implement.Rmd’
--- re-building ‘simulation.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘simulation.Rmd’
SUMMARY: processing the following file failed:
‘implement.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.6.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘demo.Rmd’ using rmarkdown
---------------------------------------------------------------------------
- Longitudinal clustering using: longitudinal k-means (KML)
---------------------------------------------------------------------------
Method arguments:
time: getOption("latrend.time")
id: getOption("latrend.id")
nClusters: 2
nbRedrawing: 1
maxIt: 200
imputationMethod:"copyMean"
distanceName: "euclidean"
power: 2
distance: function() {}
centerMethod: meanNA
startingCond: "nearlyAll"
nbCriterion: 1000
scale: TRUE
response: "Y"
---------------------------------------------------------------------------
Checking and transforming the training data format.
Preparing the training data for fitting...
Fitting the method...
Done fitting the method (0.56 secs)
---------------------------------------------------------------------------
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘demo.Rmd’
--- re-building ‘implement.Rmd’ using rmarkdown
---------------------------------------------------------------------------
- Longitudinal clustering using: stratify
---------------------------------------------------------------------------
Method arguments:
center: meanNA
nClusters: NaN
clusterNames: NULL
time: getOption("latrend.time")
id: getOption("latrend.id")
name: "stratify"
response: "Y"
stratify: Y[1] > 1.6
---------------------------------------------------------------------------
Checking and transforming the training data format.
Preparing the training data for fitting...
Fitting the method...
Done fitting the method (0.085 secs)
---------------------------------------------------------------------------
---------------------------------------------------------------------------
- Longitudinal clustering using: stratify
---------------------------------------------------------------------------
Method arguments:
center: mean
nClusters: NaN
clusterNames: NULL
time: getOption("latrend.time")
id: getOption("latrend.id")
name: "stratify"
response: "Y"
stratify: stratfun
---------------------------------------------------------------------------
Checking and transforming the training data format.
Preparing the training data for fitting...
Fitting the method...
Done fitting the method (0.48 secs)
---------------------------------------------------------------------------
Quitting from implement.Rmd:115-124 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
---
Backtrace:
▆
1. ├─casedata[, `:=`(Intercept, coef(lm(Y ~ Time, .SD))[1]), by = Traj]
2. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'implement.Rmd' failed with diagnostics:
attempt access index 8/8 in VECTOR_ELT
--- failed re-building ‘implement.Rmd’
--- re-building ‘simulation.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘simulation.Rmd’
SUMMARY: processing the following file failed:
‘implement.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.6.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘demo.Rmd’ using rmarkdown
---------------------------------------------------------------------------
- Longitudinal clustering using: longitudinal k-means (KML)
---------------------------------------------------------------------------
Method arguments:
time: getOption("latrend.time")
id: getOption("latrend.id")
nClusters: 2
nbRedrawing: 1
maxIt: 200
imputationMethod:"copyMean"
distanceName: "euclidean"
power: 2
distance: function() {}
centerMethod: meanNA
startingCond: "nearlyAll"
nbCriterion: 1000
scale: TRUE
response: "Y"
---------------------------------------------------------------------------
Checking and transforming the training data format.
Preparing the training data for fitting...
Fitting the method...
Done fitting the method (0.83 secs)
---------------------------------------------------------------------------
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘demo.Rmd’
--- re-building ‘implement.Rmd’ using rmarkdown
---------------------------------------------------------------------------
- Longitudinal clustering using: stratify
---------------------------------------------------------------------------
Method arguments:
center: meanNA
nClusters: NaN
clusterNames: NULL
time: getOption("latrend.time")
id: getOption("latrend.id")
name: "stratify"
response: "Y"
stratify: Y[1] > 1.6
---------------------------------------------------------------------------
Checking and transforming the training data format.
Preparing the training data for fitting...
Fitting the method...
Done fitting the method (0.055 secs)
---------------------------------------------------------------------------
---------------------------------------------------------------------------
- Longitudinal clustering using: stratify
---------------------------------------------------------------------------
Method arguments:
center: mean
nClusters: NaN
clusterNames: NULL
time: getOption("latrend.time")
id: getOption("latrend.id")
name: "stratify"
response: "Y"
stratify: stratfun
---------------------------------------------------------------------------
Checking and transforming the training data format.
Preparing the training data for fitting...
Fitting the method...
Done fitting the method (0.29 secs)
---------------------------------------------------------------------------
Quitting from implement.Rmd:115-124 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
---
Backtrace:
▆
1. ├─casedata[, `:=`(Intercept, coef(lm(Y ~ Time, .SD))[1]), by = Traj]
2. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'implement.Rmd' failed with diagnostics:
attempt access index 8/8 in VECTOR_ELT
--- failed re-building ‘implement.Rmd’
--- re-building ‘simulation.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘simulation.Rmd’
SUMMARY: processing the following file failed:
‘implement.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.6.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘mixAK’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.6.2
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘mixAK’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64