Last updated on 2025-12-20 09:49:54 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.2 | 3.61 | 219.03 | 222.64 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.2 | 2.90 | 114.74 | 117.64 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.2 | 8.00 | 275.10 | 283.10 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.2 | 7.00 | 267.86 | 274.86 | ERROR | |
| r-devel-windows-x86_64 | 1.1.2 | 6.00 | 193.00 | 199.00 | OK | |
| r-patched-linux-x86_64 | 1.1.2 | 4.80 | 199.27 | 204.07 | OK | |
| r-release-linux-x86_64 | 1.1.2 | 4.09 | 198.15 | 202.24 | OK | |
| r-release-macos-arm64 | 1.1.2 | OK | ||||
| r-release-macos-x86_64 | 1.1.2 | 3.00 | 186.00 | 189.00 | OK | |
| r-release-windows-x86_64 | 1.1.2 | 6.00 | 192.00 | 198.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.2 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.2 | 3.00 | 131.00 | 134.00 | OK | |
| r-oldrel-windows-x86_64 | 1.1.2 | 8.00 | 260.00 | 268.00 | OK |
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [33s/39s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+
+ library(testthat)
+ library(nosoi)
+
+ test_check("nosoi")
+
+ }
Loading required package: data.table
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
Saving _problems/testTransmissionTree-47.R
Saving _problems/testTransmissionTree-204.R
Saving _problems/testTransmissionTree-370.R
Saving _problems/testTransmissionTree-557.R
Saving _problems/testTransmissionTree-738.R
Saving _problems/testTransmissionTree-819.R
Saving _problems/testTransmissionTree-973.R
[ FAIL 7 | WARN 2 | SKIP 0 | PASS 477 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('testTransmissionTree.R:47:3'): Single, discrete ─────────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(test.nosoiA) at testTransmissionTree.R:47:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:204:3'): Single, continuous ──────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 15/15 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(test.nosoiA) at testTransmissionTree.R:204:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:370:3'): Dual, discrete ──────────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 12/12 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(test.nosoiA) at testTransmissionTree.R:370:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:557:3'): Dual, continuous ────────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 16/16 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(test.nosoiA) at testTransmissionTree.R:557:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:738:3'): Single, discrete, Sink ──────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 12/12 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(SimulationSingle) at testTransmissionTree.R:738:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:819:3'): Single, none ────────────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(SimulationSingle) at testTransmissionTree.R:819:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:973:3'): Dual, none ──────────────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(SimulationDual) at testTransmissionTree.R:973:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
[ FAIL 7 | WARN 2 | SKIP 0 | PASS 477 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘continuous.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘continuous.Rmd’
--- re-building ‘discrete.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘discrete.Rmd’
--- re-building ‘none.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘none.Rmd’
--- re-building ‘nosoi.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘nosoi.Rmd’
--- re-building ‘output.Rmd’ using rmarkdown
Quitting from output.Rmd:400-421 [treeA_actual]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 11/11 in VECTOR_ELT
---
Backtrace:
▆
1. └─nosoi::getTransmissionTree(test.nosoiA)
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'output.Rmd' failed with diagnostics:
attempt access index 11/11 in VECTOR_ELT
--- failed re-building ‘output.Rmd’
SUMMARY: processing the following file failed:
‘output.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [89s/170s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+
+ library(testthat)
+ library(nosoi)
+
+ test_check("nosoi")
+
+ }
Loading required package: data.table
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
Saving _problems/testTransmissionTree-47.R
Saving _problems/testTransmissionTree-204.R
Saving _problems/testTransmissionTree-370.R
Saving _problems/testTransmissionTree-557.R
Saving _problems/testTransmissionTree-738.R
Saving _problems/testTransmissionTree-819.R
Saving _problems/testTransmissionTree-973.R
[ FAIL 7 | WARN 2 | SKIP 0 | PASS 477 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('testTransmissionTree.R:47:3'): Single, discrete ─────────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(test.nosoiA) at testTransmissionTree.R:47:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:204:3'): Single, continuous ──────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 15/15 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(test.nosoiA) at testTransmissionTree.R:204:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:370:3'): Dual, discrete ──────────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 12/12 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(test.nosoiA) at testTransmissionTree.R:370:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:557:3'): Dual, continuous ────────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 16/16 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(test.nosoiA) at testTransmissionTree.R:557:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:738:3'): Single, discrete, Sink ──────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 12/12 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(SimulationSingle) at testTransmissionTree.R:738:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:819:3'): Single, none ────────────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(SimulationSingle) at testTransmissionTree.R:819:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:973:3'): Dual, none ──────────────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(SimulationDual) at testTransmissionTree.R:973:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
[ FAIL 7 | WARN 2 | SKIP 0 | PASS 477 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘continuous.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘continuous.Rmd’
--- re-building ‘discrete.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘discrete.Rmd’
--- re-building ‘none.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘none.Rmd’
--- re-building ‘nosoi.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘nosoi.Rmd’
--- re-building ‘output.Rmd’ using rmarkdown
Quitting from output.Rmd:400-421 [treeA_actual]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 11/11 in VECTOR_ELT
---
Backtrace:
▆
1. └─nosoi::getTransmissionTree(test.nosoiA)
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'output.Rmd' failed with diagnostics:
attempt access index 11/11 in VECTOR_ELT
--- failed re-building ‘output.Rmd’
SUMMARY: processing the following file failed:
‘output.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [80s/95s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+
+ library(testthat)
+ library(nosoi)
+
+ test_check("nosoi")
+
+ }
Loading required package: data.table
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
Saving _problems/testTransmissionTree-47.R
Saving _problems/testTransmissionTree-204.R
Saving _problems/testTransmissionTree-370.R
Saving _problems/testTransmissionTree-557.R
Saving _problems/testTransmissionTree-738.R
Saving _problems/testTransmissionTree-819.R
Saving _problems/testTransmissionTree-973.R
[ FAIL 7 | WARN 2 | SKIP 0 | PASS 477 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('testTransmissionTree.R:47:3'): Single, discrete ─────────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 11/11 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(test.nosoiA) at testTransmissionTree.R:47:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:204:3'): Single, continuous ──────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 15/15 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(test.nosoiA) at testTransmissionTree.R:204:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:370:3'): Dual, discrete ──────────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 12/12 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(test.nosoiA) at testTransmissionTree.R:370:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:557:3'): Dual, continuous ────────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 16/16 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(test.nosoiA) at testTransmissionTree.R:557:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:738:3'): Single, discrete, Sink ──────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 12/12 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(SimulationSingle) at testTransmissionTree.R:738:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:819:3'): Single, none ────────────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 8/8 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(SimulationSingle) at testTransmissionTree.R:819:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
── Error ('testTransmissionTree.R:973:3'): Dual, none ──────────────────────────
Error in ``[.data.table`(table.hosts, , `:=`("indNodes", .GRP), by = c("inf.by", "inf.time"))`: attempt access index 9/9 in VECTOR_ELT
Backtrace:
▆
1. └─nosoi::getTransmissionTree(SimulationDual) at testTransmissionTree.R:973:3
2. ├─table.hosts[, `:=`("indNodes", .GRP), by = c("inf.by", "inf.time")]
3. └─data.table:::`[.data.table`(...)
[ FAIL 7 | WARN 2 | SKIP 0 | PASS 477 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc