| Type: | Package |
| Title: | Test Data for the 'admiral' Package |
| Version: | 0.7.0 |
| Description: | A set of Study Data Tabulation Model (SDTM) datasets from the Clinical Data Interchange Standards Consortium (CDISC) pilot project used for testing and developing Analysis Data Model (ADaM) derivations inside the 'admiral' package. |
| Language: | en-US |
| License: | Apache License (≥ 2.0) |
| Depends: | R (≥ 3.5.0) |
| Encoding: | UTF-8 |
| LazyData: | true |
| RoxygenNote: | 7.2.3 |
| Suggests: | devtools, lintr, pkgdown, testthat, knitr, rmarkdown, roxygen2, spelling, usethis, covr |
| NeedsCompilation: | no |
| Packaged: | 2023-09-10 15:02:50 UTC; r590548 |
| Author: | Ben Straub [aut, cre], Stefan Bundfuss [aut], Gordon Miller [aut], Thomas Neitmann [aut], Syed Mubasheer [aut], Ross Farrugia [ctb], Shan Lee [ctb], Gopi Vegesna [ctb], Sophie Shapcott [ctb], Mahdi About [ctb], Antonio Rodríguez [ctb], Claudia Carlucci [ctb], Annie Yang [ctb], Tamara Senior [ctb], F. Hoffmann-La Roche AG [cph, fnd], GlaxoSmithKline LLC [cph, fnd], Clinical Data Interchange Standards Consortium [cph] |
| Maintainer: | Ben Straub <ben.x.straub@gsk.com> |
| Repository: | CRAN |
| Date/Publication: | 2023-09-10 15:30:04 UTC |
admiral.test: Test Data for the 'admiral' Package
Description
A set of Study Data Tabulation Model (SDTM) datasets from the Clinical Data Interchange Standards Consortium (CDISC) pilot project used for testing and developing Analysis Data Model (ADaM) derivations inside the 'admiral' package.
Author(s)
Maintainer: Ben Straub ben.x.straub@gsk.com
Authors:
Stefan Bundfuss
Gordon Miller
Thomas Neitmann
Syed Mubasheer
Other contributors:
Ross Farrugia [contributor]
Shan Lee [contributor]
Gopi Vegesna [contributor]
Sophie Shapcott [contributor]
Mahdi About [contributor]
Antonio Rodríguez [contributor]
Claudia Carlucci [contributor]
Annie Yang [contributor]
Tamara Senior [contributor]
F. Hoffmann-La Roche AG [copyright holder, funder]
GlaxoSmithKline LLC [copyright holder, funder]
Clinical Data Interchange Standards Consortium [copyright holder]
Adverse Events Dataset-updated
Description
An updated SDTM AE dataset that uses the CDISC pilot project
Usage
admiral_ae
Format
An object of class tbl_df (inherits from tbl, data.frame) with 1191 rows and 36 columns.
Source
https://github.com/pharmaverse/admiral.test/blob/main/data/admiral_ae.rda
Concomitant Medication Dataset
Description
A SDTM CM dataset from the CDISC pilot project
Usage
admiral_cm
Format
An object of class tbl_df (inherits from tbl, data.frame) with 7510 rows and 21 columns.
Source
Demography Dataset
Description
A SDTM DM dataset from the CDISC pilot project
Usage
admiral_dm
Format
An object of class tbl_df (inherits from tbl, data.frame) with 306 rows and 25 columns.
Source
Disposition Dataset-updated
Description
An updated SDTM DS dataset that uses the CDISC pilot project
Usage
admiral_ds
Format
An object of class tbl_df (inherits from tbl, data.frame) with 850 rows and 13 columns.
Author(s)
Gopi Vegesna
Source
https://github.com/pharmaverse/admiral.test/blob/main/data/admiral_ds.rda
Electrocardiogram Dataset
Description
An example of standard SDTM EG dataset to be used in deriving ADEG dataset
Usage
admiral_eg
Format
An object of class tbl_df (inherits from tbl, data.frame) with 26669 rows and 24 columns.
Exposure Dataset
Description
A SDTM EX dataset from the CDISC pilot project
Usage
admiral_ex
Format
An object of class tbl_df (inherits from tbl, data.frame) with 591 rows and 17 columns.
Source
Laboratory Measurements Dataset
Description
An updated SDTM LB dataset that uses data from the CDISC pilot project
Usage
admiral_lb
Format
An object of class tbl_df (inherits from tbl, data.frame) with 59580 rows and 23 columns.
Author(s)
Annie Yang
Source
https://github.com/pharmaverse/admiral.test/blob/main/data/admiral_lb.rda
Medical History Dataset-updated
Description
An updated SDTM MH dataset that uses data from the CDISC pilot project
Usage
admiral_mh
Format
An object of class tbl_df (inherits from tbl, data.frame) with 1818 rows and 28 columns.
Author(s)
Annie Yang
Source
Ophthalmic Examinations Dataset
Description
A SDTM OE dataset simulated by Ophthalmology team
Usage
admiral_oe
Format
An object of class grouped_df (inherits from tbl_df, tbl, data.frame) with 15344 rows and 25 columns.
Author(s)
Gordon Miller
Pharmacokinetics Concentrations Dataset
Description
A SDTM PC dataset simulated by Antonio Rodríguez Contestí
Usage
admiral_pc
Format
An object of class tbl_df (inherits from tbl, data.frame) with 3556 rows and 20 columns.
Author(s)
Antonio Rodríguez Contestí
Source
https://github.com/pharmaverse/admiral.test/blob/main/data/admiral_pc.rda
Pharmacokinetic Parameters Dataset
Description
A SDTM PP dataset simulated by Antonio Rodríguez Contestí
Usage
admiral_pp
Format
An object of class data.frame with 2346 rows and 14 columns.
Author(s)
Antonio Rodríguez Contestí
Source
https://github.com/pharmaverse/admiral.test/blob/main/data/admiral_pp.rda
Questionnaire Dataset
Description
A SDTM QS dataset from the CDISC pilot project & Ophthalmology test data
Usage
admiral_qs
Format
An object of class tbl_df (inherits from tbl, data.frame) with 202907 rows and 20 columns.
Source
https://github.com/pharmaverse/admiral.test/blob/main/data/admiral_qs.rda # nolint
Disease Response Dataset
Description
A SDTM RS dataset simulated by Gopi Vegesna
Usage
admiral_rs
Format
An object of class tbl_df (inherits from tbl, data.frame) with 5808 rows and 19 columns.
Author(s)
Gopi Vegesna
Subject Characteristic Dataset
Description
A SDTM SC dataset simulated by Ophthalmology team
Usage
admiral_sc
Format
An object of class tbl_df (inherits from tbl, data.frame) with 254 rows and 12 columns.
Author(s)
Gordon Miller
SDG Dataset
Description
An example SDG dataset
Usage
admiral_sdg_db
Format
An object of class tbl_df (inherits from tbl, data.frame) with 16 rows and 5 columns.
SMQ Dataset
Description
An example SMQ dataset
Usage
admiral_smq_db
Format
An object of class tbl_df (inherits from tbl, data.frame) with 44 rows and 6 columns.
Supplemental Adverse Events Dataset
Description
A SDTM SUPPAE dataset from the CDISC pilot project
Usage
admiral_suppae
Format
An object of class tbl_df (inherits from tbl, data.frame) with 1191 rows and 10 columns.
Source
Supplemental Demography Dataset
Description
A SDTM SUPPDM dataset from the CDISC pilot project
Usage
admiral_suppdm
Format
An object of class tbl_df (inherits from tbl, data.frame) with 1197 rows and 10 columns.
Source
Supplemental Disposition Dataset-updated
Description
A SDTM SUPPDS dataset from the CDISC pilot project
Usage
admiral_suppds
Format
An object of class tbl_df (inherits from tbl, data.frame) with 3 rows and 9 columns.
Source
Supplemental Tumor Results Dataset
Description
A SDTM SUPPTR dataset simulated by Gopi Vegesna
Usage
admiral_supptr
Format
An object of class tbl_df (inherits from tbl, data.frame) with 55995 rows and 9 columns.
Author(s)
Gopi Vegesna
Subject Visits Dataset
Description
A SDTM SV dataset from the CDISC pilot project
Usage
admiral_sv
Format
An object of class tbl_df (inherits from tbl, data.frame) with 3559 rows and 8 columns.
Source
Tumor Results Dataset
Description
A SDTM TR dataset simulated by Gopi Vegesna
Usage
admiral_tr
Format
An object of class tbl_df (inherits from tbl, data.frame) with 55995 rows and 24 columns.
Author(s)
Gopi Vegesna
Trial Design Dataset
Description
A SDTM TS dataset from the CDISC pilot project
Usage
admiral_ts
Format
An object of class tbl_df (inherits from tbl, data.frame) with 33 rows and 6 columns.
Source
Tumor Identification Dataset
Description
A SDTM TU dataset simulated by Gopi Vegesna
Usage
admiral_tu
Format
An object of class tbl_df (inherits from tbl, data.frame) with 7734 rows and 18 columns.
Author(s)
Gopi Vegesna
Vital Signs Dataset
Description
A SDTM VS dataset from the CDISC pilot project
Usage
admiral_vs
Format
An object of class tbl_df (inherits from tbl, data.frame) with 29643 rows and 24 columns.
Source
An example function as expected by the 'get_terms_fun' parameter of 'admiral::create_query_data()'
Description
An example function as expected by the 'get_terms_fun' parameter of 'admiral::create_query_data()'
Usage
get_terms(basket_select, version, keep_id, temp_env)
Arguments
basket_select |
A basket_select object defining the terms |
version |
MedDRA version |
keep_id |
Should 'GRPID' be included in the output? |
temp_env |
Temporary environment |
Adverse Events Dataset-raw
Description
A SDTM AE dataset from the CDISC pilot project
Usage
raw_ae
Format
An object of class tbl_df (inherits from tbl, data.frame) with 1191 rows and 35 columns.
Source
Disposition Dataset-raw
Description
A SDTM DS dataset from the CDISC pilot project
Usage
raw_ds
Format
An object of class tbl_df (inherits from tbl, data.frame) with 596 rows and 13 columns.
Source
Laboratory Measurements Dataset
Description
A SDTM LB dataset from the CDISC pilot project
Usage
raw_lb
Format
An object of class tbl_df (inherits from tbl, data.frame) with 59580 rows and 23 columns.
Source
Medical History Dataset-raw
Description
A SDTM MH dataset from the CDISC pilot project
Usage
raw_mh
Format
An object of class tbl_df (inherits from tbl, data.frame) with 1818 rows and 19 columns.
Source
Questionnaire Dataset
Description
A SDTM QS dataset from the CDISC pilot project
Usage
raw_qs
Format
An object of class tbl_df (inherits from tbl, data.frame) with 121749 rows and 20 columns.
Source
Supplemental Disposition Dataset-raw
Description
A SDTM SUPPDS dataset from the CDISC pilot project
Usage
raw_suppds
Format
An object of class tbl_df (inherits from tbl, data.frame) with 3 rows and 10 columns.