## ----options, echo = FALSE---------------------------------------------------------------------------------------------------------------------------------------------- library(knitr) opts_chunk$set( echo = TRUE, results = 'markup', warning = FALSE, # stop document execution if error (not the default) error = FALSE, message = FALSE, cache = FALSE, fig.width = 8, fig.height = 7, fig.path = "./figures_vignette/", fig.align = 'center') options(width = 170) # instead of warn = 0 by default # include warnings when they occur in the document options(warn = 1) ## ----loadPackages------------------------------------------------------------------------------------------------------------------------------------------------------- library(inTextSummaryTable) library(pander) library(tools) # toTitleCase ## ----loadData----------------------------------------------------------------------------------------------------------------------------------------------------------- library(clinUtils) # load example data data(dataADaMCDISCP01) dataAll <- dataADaMCDISCP01 labelVars <- attr(dataAll, "labelVars") # dataAll contains a list class(dataAll) # ... of ADaM datasets names(dataAll) # access a specific dataset head(dataAll$ADSL, 1) # check label of a subset of the variable(s) head(labelVars) # or for a specific variable: labelVars["USUBJID"] # or: getLabelVar(var = "USUBJID", labelVars = labelVars) ## ----getVignetteExport, eval = FALSE------------------------------------------------------------------------------------------------------------------------------------ # # vignette("inTextSummaryTable-exportTables", "inTextSummaryTable") # ## ----getVignetteAdvanced, eval = FALSE---------------------------------------------------------------------------------------------------------------------------------- # # vignette("inTextSummaryTable-advanced", "inTextSummaryTable") # ## ----getVignetteVisualization, eval = FALSE----------------------------------------------------------------------------------------------------------------------------- # # vignette("inTextSummaryTable-visualization", "inTextSummaryTable") # ## ----getVignetteAesthetics, eval = FALSE-------------------------------------------------------------------------------------------------------------------------------- # # vignette("inTextSummaryTable-aesthetics", "inTextSummaryTable") # ## ----includeSessionInfo, echo = FALSE----------------------------------------------------------------------------------------------------------------------------------- pander(sessionInfo())