linktree: Estimate Transmission Assortativity Coefficients
Estimates group transmission assortativity coefficients from transmission trees. Group transmission assortativity coefficients measure the tendency for individuals to transmit within their own group (e.g. age group, vaccination status, or location) compared to other groups. The package requires information on who infected whom, group membership for all individuals, and the relative sizes of each group in the population. For more details see Geismar et al. (2024) <doi:10.1371/journal.pone.0313037>.
| Version: | 0.1.0 |
| Depends: | R (≥ 3.5) |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0), pak, epicontacts, visNetwork |
| Published: | 2025-12-15 |
| DOI: | 10.32614/CRAN.package.linktree (may not be active yet) |
| Author: | Cyril Geismar 
[aut, cre, cph] |
| Maintainer: | Cyril Geismar <c.geismar21 at imperial.ac.uk> |
| BugReports: | https://github.com/CyGei/linktree/issues |
| License: | CC BY 4.0 |
| URL: | https://github.com/CyGei/linktree, https://cygei.github.io/linktree/ |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | linktree results |
Documentation:
| Reference manual: | linktree.html , linktree.pdf |
| Vignettes: |
linktree (source, R code) |
Downloads:
| Package source: | linktree_0.1.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): linktree_0.1.0.tgz, r-oldrel (arm64): linktree_0.1.0.tgz, r-release (x86_64): linktree_0.1.0.tgz, r-oldrel (x86_64): linktree_0.1.0.tgz |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=linktree to link to this page.