scFlex 0.1.1
- Added automatic detection and joining of split Seurat v5
Assay5 layers such as counts.sample1,
counts.sample2, and matching data.*
layers.
- Counts-only Seurat objects can now be written to AnnData without
normalization; counts are placed in
X and
layers["counts"] with an explicit conversion note.
inspect_sc() now reports detected count and
normalized-data layer groups for Assay5 objects.
check_input_info() is retained as a compatibility
wrapper but points users to inspect_sc().
- Improved assay-cell, feature-metadata, and reduction alignment
during Seurat extraction.
scFlex 0.1.0
- Initial development release.
- Adds a common
convert_sc() interface for Seurat,
SingleCellExperiment, AnnData, and Loom.
- Preserves aligned counts, normalized expression, cell/feature
metadata, and compatible dimensional reductions.
- Adds Seurat classic Assay <-> Assay5 conversion helpers.
- Uses
reticulate::py_require() instead of a hard-coded
Conda environment.